Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g06280 Coffea canephora HOM05D006750 ORTHO05D008426 2.0e-88 328.9 155 100.0
RhsimUnG0232200 Rhododendron simsii HOM05D006750 ORTHO05D008426 4.4e-59 231.5 157 69.4
Actinidia22388 Actinidia chinensis HOM05D006750 ORTHO05D008426 4.9e-58 228.0 170 62.9
vmacro03507 Vaccinium macrocarpon HOM05D006750 ORTHO05D008426 4.9e-58 228.0 140 72.9
Solyc02g069070.3 Solanum lycopersicum HOM05D006750 ORTHO05D008426 8.3e-58 227.3 155 67.7
Nitab4.5_0003773g0080 Nicotiana tabacum HOM05D006750 ORTHO05D008426 1.9e-57 226.1 155 67.1
CSS0027015 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 2.4e-57 225.7 156 65.4
CAN.G1222.19 Capsicum annuum HOM05D006750 ORTHO05D008426 2.1e-56 222.6 158 66.5
FvH4_3g12150 Fragaria vesca HOM05D006750 ORTHO05D008426 2.7e-56 222.2 160 65.0
FAN16G3293 Fragaria x ananassa HOM05D006750 ORTHO05D008426 3.5e-56 221.9 161 64.6
FAN25G1681 Fragaria x ananassa HOM05D006750 ORTHO05D008426 4.6e-56 221.5 160 65.0
RcHm_v2.0_Chr5g0019891 Rosa chinensis HOM05D006750 ORTHO05D008426 4.6e-56 221.5 149 67.1
Atru.chr12.2220 Acer truncatum HOM05D006750 ORTHO05D008426 1.3e-55 219.9 154 63.6
Ciclev10016972m.g Citrus clementina HOM05D006750 ORTHO05D008426 1.3e-55 219.9 157 63.1
Potri.012G120220 Populus trichocarpa HOM05D006750 ORTHO05D008426 3.0e-55 218.8 151 62.9
TWI63G0081 Tripterygium wilfordii HOM05D006750 ORTHO05D008426 3.0e-55 218.8 159 62.9
Nitab4.5_0002056g0050 Nicotiana tabacum HOM05D006750 ORTHO05D008426 8.6e-55 217.2 155 65.2
Potri.012G120100 Populus trichocarpa HOM05D006750 ORTHO05D008426 4.3e-54 214.9 151 61.6
Prupe.4G110300 Prunus persica HOM05D006750 ORTHO05D008426 5.6e-54 214.5 139 67.6
Nn7g38126 Nelumbo nucifera HOM05D006750 ORTHO05D008426 1.2e-53 213.4 153 62.7
Migut.M01971 Erythranthe guttata HOM05D006750 ORTHO05D008426 1.6e-53 213.0 147 66.7
Lj1A1143T38 Lonicera japonica HOM05D006750 ORTHO05D008426 2.1e-53 212.6 136 69.1
Manes.11G104340 Manihot esculenta HOM05D006750 ORTHO05D008426 2.8e-53 212.2 142 65.5
DCAR_004323 Daucus carota HOM05D006750 ORTHO05D008426 3.6e-53 211.8 137 70.1
Hma1.2p1_0040F.1_g025070 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 8.1e-53 210.7 128 71.9
MD10G1234600 Malus domestica HOM05D006750 ORTHO05D008426 1.8e-52 209.5 149 61.7
Dinv11873 Davidia involucrata HOM05D006750 ORTHO05D008426 2.4e-52 209.1 136 70.6
MSTRG.22268 Avicennia marina HOM05D006750 ORTHO05D008426 3.1e-52 208.8 161 62.1
Thecc.06G141200 Theobroma cacao HOM05D006750 ORTHO05D008426 4.0e-52 208.4 152 62.5
SGA_v2.0_scaffold298G47680 Striga asiatica HOM05D006750 ORTHO05D008426 5.2e-52 208.0 144 65.3
Oeu052673.2 Olea europaea HOM05D006750 ORTHO05D008426 6.8e-52 207.6 138 67.4
CiPaw.10G065100 Carya illinoinensis HOM05D006750 ORTHO05D008426 8.9e-52 207.2 151 62.9
Sabra15G0136900 Salix brachista HOM05D006750 ORTHO05D008426 1.5e-51 206.5 152 60.5
SalBow8G0594 Salvia bowleyana HOM05D006750 ORTHO05D008426 2.0e-51 206.1 141 66.0
SalBow8G2736 Salvia bowleyana HOM05D006750 ORTHO05D008426 2.0e-51 206.1 141 66.0
GSVIVG01012094001 Vitis vinifera HOM05D006750 ORTHO05D008426 2.0e-51 206.1 147 61.9
Thecc.06G140200 Theobroma cacao HOM05D006750 ORTHO05D008426 3.4e-51 205.3 152 61.8
MD05G1254400 Malus domestica HOM05D006750 ORTHO05D008426 4.4e-51 204.9 157 61.1
Eucgr.D01041 Eucalyptus grandis HOM05D006750 ORTHO05D008426 7.6e-51 204.1 148 64.2
MELO3C021769.2 Cucumis melo HOM05D006750 ORTHO05D008426 9.9e-51 203.8 135 65.9
AL4G36810 Arabidopsis lyrata HOM05D006750 ORTHO05D008426 1.7e-50 203.0 151 59.6
Carub.0004s2150 Capsella rubella HOM05D006750 ORTHO05D008426 1.7e-50 203.0 156 59.0
TAR627G0115 Trochodendron aralioides HOM05D006750 ORTHO05D008426 1.7e-50 203.0 150 64.0
CANSAT21G0613 Cannabis sativa HOM05D006750 ORTHO05D008426 2.9e-50 202.2 148 63.5
Sed0026407 Sechium edule HOM05D006750 ORTHO05D008426 3.8e-50 201.8 139 65.5
Haze_06026 Corylus avellana HOM05D006750 ORTHO05D008426 6.4e-50 201.1 129 68.2
Aqoxy1G01469 Aquilegia oxysepala HOM05D006750 ORTHO05D008426 1.4e-49 199.9 151 58.9
HanXRQChr07g0189661 Helianthus annuus HOM05D006750 ORTHO05D008426 1.4e-49 199.9 150 61.3
BraA05t19661Z Brassica rapa HOM05D006750 ORTHO05D008426 1.9e-49 199.5 154 61.0
ClCG01G009300 Citrullus lanatus HOM05D006750 ORTHO05D008426 2.4e-49 199.1 138 63.8
Haze_06024 Corylus avellana HOM05D006750 ORTHO05D008426 2.4e-49 199.1 129 67.4
Lsat_1_v5_gn_5_36321 Lactuca sativa HOM05D006750 ORTHO05D008426 2.4e-49 199.1 151 62.3
AT2G39440 Arabidopsis thaliana HOM05D006750 ORTHO05D008426 3.2e-49 198.7 155 56.8
Thhalv10017350m.g Eutrema salsugineum HOM05D006750 ORTHO05D008426 3.2e-49 198.7 156 58.3
CSS0019703 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 4.2e-49 198.4 139 63.3
BcaC02g11618 Brassica carinata HOM05D006750 ORTHO05D008426 5.4e-49 198.0 154 60.4
C04p13120 Brassica napus HOM05D006750 ORTHO05D008426 5.4e-49 198.0 154 60.4
CARHR134300 Cardamine hirsuta HOM05D006750 ORTHO05D008426 5.4e-49 198.0 155 57.4
A05p06970 Brassica napus HOM05D006750 ORTHO05D008426 1.2e-48 196.8 163 57.7
BcaB02g09122 Brassica carinata HOM05D006750 ORTHO05D008426 1.6e-48 196.4 153 59.5
CsaV3_1G046580 Cucumis sativus L. HOM05D006750 ORTHO05D008426 2.1e-48 196.1 138 63.0
THA.LOC104824253 Tarenaya hassleriana HOM05D006750 ORTHO05D008426 2.1e-48 196.1 155 59.4
Ca_21154_v3 Cicer arietinum L. HOM05D006750 ORTHO05D008426 2.7e-48 195.7 151 60.9
BolC4t22432H Brassica oleracea HOM05D006750 ORTHO05D008426 3.5e-48 195.3 154 59.1
Sp4g21740 Schrenkiella parvula HOM05D006750 ORTHO05D008426 6.0e-48 194.5 152 57.9
ECA246G4127 Erigeron canadensis HOM05D006750 ORTHO05D008426 7.8e-48 194.1 129 65.9
Gorai.009G437900 Gossypium raimondii HOM05D006750 ORTHO05D008426 2.3e-47 192.6 146 61.6
BcaC02g12068 Brassica carinata HOM05D006750 ORTHO05D008426 3.0e-47 192.2 154 58.4
Gohir.A04G017000 Gossypium hirsutum HOM05D006750 ORTHO05D008426 5.1e-47 191.4 147 61.2
unitig_748.g7497 Utricularia gibba HOM05D006750 ORTHO05D008426 6.6e-47 191.0 149 58.4
C04p08300 Brassica napus HOM05D006750 ORTHO05D008426 1.1e-46 190.3 154 57.8
Gohir.D05G369200 Gossypium hirsutum HOM05D006750 ORTHO05D008426 1.1e-46 190.3 146 61.0
Lj4g0008374 Lotus japonicus HOM05D006750 ORTHO05D008426 3.3e-46 188.7 149 58.4
Phvul.003G153500 Phaseolus vulgaris HOM05D006750 ORTHO05D008426 3.3e-46 188.7 148 58.8
Duzib235G0570 Durio zibethinus HOM05D006750 ORTHO05D008426 1.3e-45 186.8 140 60.7
QL11p018076 Quercus lobata HOM05D006750 ORTHO05D008426 1.3e-45 186.8 147 57.8
Glyma.02G206800 Glycine max HOM05D006750 ORTHO05D008426 2.1e-45 186.0 149 58.4
PSO675G8070 Papaver somniferum HOM05D006750 ORTHO05D008426 1.8e-44 183.0 144 56.2
PSO541G1844 Papaver somniferum HOM05D006750 ORTHO05D008426 2.4e-44 182.6 144 56.2
VMungo1215G0360 Vigna mungo HOM05D006750 ORTHO05D008426 5.3e-44 181.4 148 57.4
TPR.G24866 Trifolium pratense HOM05D006750 ORTHO05D008426 6.9e-44 181.0 150 55.3
PGR142G2582 Punica granatum HOM05D006750 ORTHO05D008426 2.0e-43 179.5 140 57.9
EL10Ac2g02809 Beta vulgaris HOM05D006750 ORTHO05D008426 7.6e-43 177.6 158 55.7
Sp4g08180 Schrenkiella parvula HOM05D006750 ORTHO05D008426 1.7e-42 176.4 158 52.5
Psat0s3953g0080 Pisum sativum HOM05D006750 ORTHO05D008426 2.9e-42 175.6 142 54.9
arahy.Tifrunner.gnm1.ann1.8322W6 Arachis hypogaea HOM05D006750 ORTHO05D008426 4.2e-41 171.8 146 52.7
arahy.Tifrunner.gnm1.ann1.RPZE8L Arachis hypogaea HOM05D006750 ORTHO05D008426 4.2e-41 171.8 146 52.7
AUR62007362 Chenopodium quinoa HOM05D006750 ORTHO05D008426 7.1e-41 171.0 141 57.4
AUR62018626 Chenopodium quinoa HOM05D006750 ORTHO05D008426 2.1e-40 169.5 156 53.8
CDE06G2778 Ceratophyllum demersum HOM05D006750 ORTHO05D008426 3.5e-40 168.7 127 56.7
HPP92_004186 Vanilla planifolia HOM05D006750 ORTHO05D008426 3.5e-40 168.7 151 50.3
Lalb_Chr02g0152091 Lupinus albus HOM05D006750 ORTHO05D008426 3.3e-38 162.2 151 51.7
Os02g0168900 Oryza sativa ssp. japonica HOM05D006750 ORTHO05D008426 4.8e-37 158.3 134 54.5
Cfa000723 Carpinus fangiana HOM05D006750 ORTHO05D008426 1.1e-36 157.1 108 64.8
Ah.12g055560 Amaranthus hybridus HOM05D002269 ORTHO05D002421 1.2e-35 153.7 162 49.4
Sc05g0005750 Simmondsia chinensis HOM05D006750 ORTHO05D008426 3.4e-35 152.1 121 55.4
Peaxi162Scf00149g00921 Petunia axillaris HOM05D006750 ORTHO05D008426 4.5e-35 151.8 153 50.3
COL.COLO4_30981 Corchorus olitorius HOM05D006750 ORTHO05D008426 7.6e-35 151.0 105 64.8
Hma1.2p1_0040F.1_g025080 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 4.2e-33 145.2 93 68.8
ATR0763G132 Amborella trichopoda HOM05D006750 ORTHO05D008426 3.5e-32 142.1 156 47.4
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 6.7e-31 137.9 109 57.8
SHI31544 Sapria himalayana HOM05D006750 ORTHO05D008426 1.2e-27 127.1 197 35.5
SMO367G1186 Selaginella moellendorffii HOM05D006750 ORTHO05D008426 1.3e-26 123.6 126 42.1
CBR_g39953 Chara braunii HOM05D006750 ORTHO05D008426 2.9e-26 122.5 161 38.5
CARHR087370 Cardamine hirsuta HOM05D006750 ORTHO05D008426 3.8e-26 122.1 85 64.7
Pp3c2_9480 Physcomitrium patens HOM05D006750 ORTHO05D008426 6.0e-24 114.8 143 37.8
Mapoly0007s0049 Marchantia polymorpha HOM05D006750 ORTHO05D008426 1.8e-23 113.2 147 38.8
Hund11170 Selenicereus undatus HOM05D006750 ORTHO05D008426 8.7e-23 110.9 74 66.2
Sopen02g018170 Solanum pennellii HOM05D006750 ORTHO05D008426 2.8e-21 105.9 63 73.0
Cpa.g.sc135.32 Carica papaya HOM05D006750 ORTHO05D008426 1.4e-20 103.6 65 67.7
Cre08.g378100 Chlamydomonas reinhardtii HOM05D006750 ORTHO05D008426 3.0e-15 85.9 130 36.9
AagrBONN_evm.TU.Sc2ySwM_344.3424 Anthoceros agrestis HOM05D006750 ORTHO05D008426 4.3e-14 82.0 111 36.9
Zm00001eb233030 Zea mays HOM05D006750 ORTHO05D008426 9.7e-14 80.9 134 34.3
Hund11169 Selenicereus undatus HOM05D006750 ORTHO05D008426 8.2e-13 77.8 74 51.4
TPR.G24917 Trifolium pratense HOM05D006750 ORTHO05D008426 4.1e-12 75.5 74 51.4
PRCOL_00005799 Prasinoderma coloniale HOM05D006750 ORTHO05D008426 2.0e-11 73.2 129 32.6
Zm00001eb233050 Zea mays HOM05D006750 ORTHO05D008426 6.1e-08 61.6 130 31.5
Cfa003473 Carpinus fangiana HOM05D006750 ORTHO05D008426 1.4e-07 60.5 32 71.9
Cfa010446 Carpinus fangiana HOM05D006750 ORTHO05D008426 1.8e-07 60.1 45 62.2
MBI18_g36125_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D018396 1.8e-07 60.1 51 41.2
Cfa005130 Carpinus fangiana HOM05D000013 ORTHO05D000011 1.5e-06 57.0 32 68.8
Cfa014827 Carpinus fangiana HOM05D006750 ORTHO05D008426 4.3e-06 55.5 31 67.7
Cfa001145 Carpinus fangiana HOM05D000011 ORTHO05D000157 7.4e-06 54.7 35 62.9


User provided reference genes

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