Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g06180 Coffea canephora HOM05D007226 ORTHO05D009160 1.7e-99 365.9 177 100.0
Dinv05963 Davidia involucrata HOM05D007226 ORTHO05D009160 2.3e-64 249.2 177 67.8
PGSC0003DMG400010353 Solanum tuberosum HOM05D007226 ORTHO05D009160 1.5e-63 246.5 184 65.2
GSVIVG01012076001 Vitis vinifera HOM05D007226 ORTHO05D009160 2.6e-63 245.7 177 68.9
Solyc02g068930.4 Solanum lycopersicum HOM05D007226 ORTHO05D009160 7.5e-63 244.2 185 65.4
Sopen02g018030 Solanum pennellii HOM05D007226 ORTHO05D009160 1.3e-62 243.4 183 65.0
CiPaw.09G078000 Carya illinoinensis HOM05D007226 ORTHO05D009160 4.9e-62 241.5 179 67.0
HanXRQChr14g0447221 Helianthus annuus HOM05D007226 ORTHO05D009160 1.4e-61 240.0 175 64.0
Nn7g38162 Nelumbo nucifera HOM05D007226 ORTHO05D009160 2.4e-61 239.2 149 72.5
Migut.M01975 Erythranthe guttata HOM05D007226 ORTHO05D009160 4.1e-61 238.4 181 64.1
Potri.015G121101 Populus trichocarpa HOM05D007226 ORTHO05D009160 7.1e-61 237.7 163 65.6
Actinidia22392 Actinidia chinensis HOM05D007226 ORTHO05D009160 9.2e-61 237.3 177 65.0
CAN.G149.55 Capsicum annuum HOM05D007226 ORTHO05D009160 9.2e-61 237.3 182 62.6
QL11p017833 Quercus lobata HOM05D007226 ORTHO05D009160 1.2e-60 236.9 182 66.5
Nitab4.5_0003773g0030 Nicotiana tabacum HOM05D007226 ORTHO05D009160 1.6e-60 236.5 188 60.1
SGA_v2.0_scaffold175G39365 Striga asiatica HOM05D007226 ORTHO05D009160 1.3e-59 233.4 177 62.1
Cfa000717 Carpinus fangiana HOM05D007226 ORTHO05D009160 3.0e-59 232.3 155 69.7
PGR004G0179 Punica granatum HOM05D007226 ORTHO05D009160 3.0e-59 232.3 156 71.2
ECA238G0615 Erigeron canadensis HOM05D007226 ORTHO05D009160 3.9e-59 231.9 175 64.6
BcaC03g16718 Brassica carinata HOM05D007226 ORTHO05D009160 1.1e-58 230.3 165 66.7
C02p45740 Brassica napus HOM05D007226 ORTHO05D009160 1.9e-58 229.6 165 66.7
BolC2t10627H Brassica oleracea HOM05D007226 ORTHO05D009160 1.9e-58 229.6 165 66.7
BraA02t07911Z Brassica rapa HOM05D007226 ORTHO05D009160 1.9e-58 229.6 165 66.7
BolC2t10635H Brassica oleracea HOM05D007226 ORTHO05D009160 2.5e-58 229.2 165 66.1
Ciclev10017084m.g Citrus clementina HOM05D007226 ORTHO05D009160 2.5e-58 229.2 141 73.0
CSS0023119 Camellia sinensis var. sinensis HOM05D007226 ORTHO05D009160 4.3e-58 228.4 141 72.3
Prupe.4G111200 Prunus persica HOM05D007226 ORTHO05D009160 7.3e-58 227.6 172 66.3
A02p28790 Brassica napus HOM05D007226 ORTHO05D009160 9.5e-58 227.3 165 66.7
FAN21G0149 Fragaria x ananassa HOM05D007226 ORTHO05D009160 9.5e-58 227.3 168 67.9
Sabra15G0137600 Salix brachista HOM05D007226 ORTHO05D009160 9.5e-58 227.3 167 66.5
CARHR177680 Cardamine hirsuta HOM05D007226 ORTHO05D009160 1.2e-57 226.9 165 67.3
BcaB07g30483 Brassica carinata HOM05D007226 ORTHO05D009160 1.6e-57 226.5 165 65.5
Cpa.g.sc135.15 Carica papaya HOM05D007226 ORTHO05D009160 3.6e-57 225.3 177 58.8
Thhalv10001050m.g Eutrema salsugineum HOM05D007226 ORTHO05D009160 4.7e-57 224.9 128 78.1
AT5G45040 Arabidopsis thaliana HOM05D007226 ORTHO05D009160 6.2e-57 224.6 172 64.0
SalBow6G7060 Salvia bowleyana HOM05D007226 ORTHO05D009160 6.2e-57 224.6 178 61.2
SalBow8G0530 Salvia bowleyana HOM05D007226 ORTHO05D009160 6.2e-57 224.6 178 61.2
FvH4_3g12220 Fragaria vesca HOM05D007226 ORTHO05D009160 8.1e-57 224.2 168 66.1
Thecc.06G141800 Theobroma cacao HOM05D007226 ORTHO05D009160 8.1e-57 224.2 138 73.9
AL8G14200 Arabidopsis lyrata HOM05D007226 ORTHO05D009160 1.1e-56 223.8 174 66.1
Rhsim02G0212700 Rhododendron simsii HOM05D007226 ORTHO05D009160 1.1e-56 223.8 170 64.1
Eucgr.E01876 Eucalyptus grandis HOM05D007226 ORTHO05D009160 2.3e-56 222.6 131 79.4
TWI38G0719 Tripterygium wilfordii HOM05D007226 ORTHO05D009160 2.3e-56 222.6 158 66.5
Ca_18766_v3 Cicer arietinum L. HOM05D007226 ORTHO05D009160 3.1e-56 222.2 159 65.4
Sp2g09820 Schrenkiella parvula HOM05D007226 ORTHO05D009160 4.0e-56 221.9 168 64.3
MD05G1252700 Malus domestica HOM05D007226 ORTHO05D009160 5.2e-56 221.5 135 74.1
FAN25G1348 Fragaria x ananassa HOM05D007226 ORTHO05D009160 6.8e-56 221.1 168 66.1
AL8G14380 Arabidopsis lyrata HOM05D007226 ORTHO05D009160 1.2e-55 220.3 174 65.5
Medtr4g083990 Medicago truncatula HOM05D007226 ORTHO05D009160 1.2e-55 220.3 153 67.3
Manes.16G056825 Manihot esculenta HOM05D007226 ORTHO05D009160 2.0e-55 219.5 173 61.3
Carub.0008s0327 Capsella rubella HOM05D007226 ORTHO05D009160 2.6e-55 219.2 172 63.4
COL.COLO4_30987 Corchorus olitorius HOM05D007226 ORTHO05D009160 2.6e-55 219.2 135 74.1
Lsat_1_v5_gn_2_62900 Lactuca sativa HOM05D007226 ORTHO05D009160 2.6e-55 219.2 175 59.4
Atru.chr10.515 Acer truncatum HOM05D007226 ORTHO05D009160 9.9e-55 217.2 177 59.9
Peaxi162Scf00149g00723 Petunia axillaris HOM05D007226 ORTHO05D009160 1.3e-54 216.9 112 86.6
Duzib192G0307 Durio zibethinus HOM05D007226 ORTHO05D009160 1.7e-54 216.5 162 64.8
TAR371G1071 Trochodendron aralioides HOM05D007226 ORTHO05D009160 1.7e-54 216.5 144 71.5
Lalb_Chr05g0219731 Lupinus albus HOM05D007226 ORTHO05D009160 6.4e-54 214.5 152 65.8
Lj4g0002757 Lotus japonicus HOM05D007226 ORTHO05D009160 7.1e-53 211.1 165 61.2
Haze_06036 Corylus avellana HOM05D007226 ORTHO05D009160 9.2e-53 210.7 218 53.2
Nitab4.5_0001288g0030 Nicotiana tabacum HOM05D007226 ORTHO05D009160 9.2e-53 210.7 208 53.4
RcHm_v2.0_Chr5g0020011 Rosa chinensis HOM05D007226 ORTHO05D009160 9.2e-53 210.7 119 82.4
Glyma.07G221900 Glycine max HOM05D007226 ORTHO05D009160 1.2e-52 210.3 145 66.2
Gohir.D06G145000 Gossypium hirsutum HOM05D007226 ORTHO05D009160 1.2e-52 210.3 165 59.4
Gorai.010G168700 Gossypium raimondii HOM05D007226 ORTHO05D009160 1.2e-52 210.3 165 59.4
ClCG01G025800 Citrullus lanatus HOM05D007226 ORTHO05D009160 2.1e-52 209.5 160 60.6
Gohir.A06G141000 Gossypium hirsutum HOM05D007226 ORTHO05D009160 3.5e-52 208.8 178 56.7
Phvul.002G098700 Phaseolus vulgaris HOM05D007226 ORTHO05D009160 6.0e-52 208.0 164 58.5
VMungo0251G0617 Vigna mungo HOM05D007226 ORTHO05D009160 6.0e-52 208.0 163 59.5
THA.LOC104812913 Tarenaya hassleriana HOM05D007226 ORTHO05D009160 1.0e-51 207.2 171 59.6
vmacro03514 Vaccinium macrocarpon HOM05D007226 ORTHO05D009160 1.3e-51 206.8 229 50.2
Aa31LG9G8170 Aethionema arabicum HOM05D007226 ORTHO05D009160 2.3e-51 206.1 157 63.1
DCAR_004326 Daucus carota HOM05D007226 ORTHO05D009160 8.6e-51 204.1 138 67.4
CDE06G2689 Ceratophyllum demersum HOM05D007226 ORTHO05D009160 4.3e-50 201.8 142 64.8
PSO675G1576 Papaver somniferum HOM05D007226 ORTHO05D009160 4.3e-50 201.8 136 69.9
TPR.G20974 Trifolium pratense HOM05D007226 ORTHO05D009160 1.2e-49 200.3 107 81.3
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 2.1e-49 199.5 143 64.3
Oeu056023.2 Olea europaea HOM05D007226 ORTHO05D009160 4.7e-49 198.4 106 81.1
CsaV3_6G053010 Cucumis sativus L. HOM05D007226 ORTHO05D009160 1.1e-48 197.2 146 63.7
arahy.Tifrunner.gnm1.ann1.X3ZR55 Arachis hypogaea HOM05D007226 ORTHO05D009160 5.2e-48 194.9 154 59.7
Aqoxy1G01459 Aquilegia oxysepala HOM05D007226 ORTHO05D009160 1.2e-47 193.7 177 54.2
C02p45640 Brassica napus HOM05D007226 ORTHO05D009160 1.7e-46 189.9 144 63.9
CDE02G1897 Ceratophyllum demersum HOM05D007226 ORTHO05D009160 1.7e-46 189.9 134 63.4
arahy.Tifrunner.gnm1.ann1.8FEK6M Arachis hypogaea HOM05D007226 ORTHO05D009160 3.8e-46 188.7 107 74.8
MELO3C007008.2 Cucumis melo HOM05D007226 ORTHO05D009160 8.4e-46 187.6 103 76.7
Sc15g0002750 Simmondsia chinensis HOM05D007226 ORTHO05D009160 1.3e-43 180.3 123 64.2
ATR0763G163 Amborella trichopoda HOM05D007226 ORTHO05D009160 4.3e-42 175.3 189 47.6
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 5.8e-39 164.9 111 66.7
Sed0015403 Sechium edule HOM05D007226 ORTHO05D009160 1.7e-38 163.3 91 74.7
SEGI_36655 Sequoiadendron giganteum HOM05D007226 ORTHO05D009160 9.3e-37 157.5 130 56.9
Psat7g130920 Pisum sativum HOM05D007226 ORTHO05D009160 1.5e-34 150.2 116 62.9
AagrBONN_evm.TU.Sc2ySwM_369.234 Anthoceros agrestis HOM05D007226 ORTHO05D009160 4.3e-34 148.7 94 64.9
SMO356G0712 Selaginella moellendorffii HOM05D007226 ORTHO05D009160 1.6e-33 146.7 106 59.4
Mapoly0135s0037 Marchantia polymorpha HOM05D007226 ORTHO05D009160 6.2e-33 144.8 182 44.0
Pp3c13_8590 Physcomitrium patens HOM05D007226 ORTHO05D009160 5.3e-32 141.7 89 65.2
MBI19_g38421_MAGBIO Magnolia biondii HOM05D007226 ORTHO05D009160 2.2e-30 136.3 172 44.2
Glyma.20G020600 Glycine max HOM05D007226 ORTHO05D009160 2.9e-30 136.0 150 46.7
HanXRQChr14g0447281 Helianthus annuus HOM05D007226 ORTHO05D009160 1.8e-27 126.7 134 49.3
Hma1.2p1_0040F.1_g025140 Hydrangea macrophylla HOM05D007226 ORTHO05D009160 1.6e-25 120.2 59 84.7
Cre16.g670950 Chlamydomonas reinhardtii HOM05D007226 ORTHO05D009160 3.7e-25 119.0 120 45.0
HPP92_015945 Vanilla planifolia HOM05D007226 ORTHO05D009160 8.1e-25 117.9 136 46.3
Lj2C351T11 Lonicera japonica HOM05D007226 ORTHO05D009160 9.0e-24 114.4 68 72.1
MCO04G097 Micromonas commoda HOM05D007226 ORTHO05D009160 1.5e-23 113.6 89 50.6
PSO541G5038 Papaver somniferum HOM05D007226 ORTHO05D009160 3.4e-23 112.5 82 65.9
PRCOL_00005064 Prasinoderma coloniale HOM05D007226 ORTHO05D009160 1.8e-16 90.1 88 44.3
MD10G1233800 Malus domestica HOM05D007226 ORTHO05D009160 1.4e-13 80.5 98 45.9
HPP92_015957 Vanilla planifolia HOM05D007226 ORTHO05D009160 6.5e-06 55.1 42 52.4


User provided reference genes

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