Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g05710 Coffea canephora HOM05D006242 ORTHO05D007936 5.9e-36 153.7 78 100.0
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 5.2e-24 114.0 60 96.7
Cc09_g05630 Coffea canephora HOM05D006242 ORTHO05D007936 5.7e-23 110.5 74 81.1
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 4.9e-22 107.5 59 93.2
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 3.5e-20 101.3 60 88.3
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 1.1e-18 96.3 63 84.1
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 6.8e-16 87.0 57 73.7
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 3.4e-15 84.7 59 66.1
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 3.4e-15 84.7 59 71.2
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 3.4e-15 84.7 60 63.3
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 3.4e-15 84.7 60 66.7
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 5.7e-15 84.0 59 69.5
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 5.7e-15 84.0 59 67.8
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 7.5e-15 83.6 60 68.3
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 7.5e-15 83.6 57 70.2
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 9.8e-15 83.2 60 65.0
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 9.8e-15 83.2 55 70.9
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 9.8e-15 83.2 55 72.7
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 1.7e-14 82.4 60 65.0
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 1.7e-14 82.4 59 67.8
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 2.2e-14 82.0 55 72.7
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 2.9e-14 81.6 59 67.8
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 2.9e-14 81.6 59 66.1
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 3.7e-14 81.3 59 62.7
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 3.7e-14 81.3 60 66.7
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 3.7e-14 81.3 55 72.7
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 6.3e-14 80.5 60 68.3
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 8.3e-14 80.1 55 69.1
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 1.1e-13 79.7 55 70.9
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 1.4e-13 79.3 60 65.0
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.4e-13 79.3 60 60.0
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 1.4e-13 79.3 53 75.5
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 1.4e-13 79.3 59 66.1
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 1.8e-13 79.0 53 73.6
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 2.4e-13 78.6 60 61.7
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 2.4e-13 78.6 59 66.1
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 2.4e-13 78.6 59 66.1
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 2.4e-13 78.6 55 72.7
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 2.4e-13 78.6 57 63.2
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 3.2e-13 78.2 55 65.5
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 5.4e-13 77.4 51 74.5
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 7.0e-13 77.0 61 63.9
Hund15669 Selenicereus undatus HOM05D000023 ORTHO05D000014 7.0e-13 77.0 59 62.7
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 1.2e-12 76.3 59 64.4
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 1.6e-12 75.9 55 65.5
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 1.6e-12 75.9 59 61.0
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 2.7e-12 75.1 55 67.3
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 2.7e-12 75.1 57 66.7
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 2.7e-12 75.1 58 65.5
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 3.5e-12 74.7 54 63.0
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 4.6e-12 74.3 57 63.2
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 4.6e-12 74.3 57 63.2
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 4.6e-12 74.3 55 65.5
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 4.6e-12 74.3 59 62.7
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 4.6e-12 74.3 57 64.9
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 4.6e-12 74.3 57 64.9
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 4.6e-12 74.3 60 63.3
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 7.8e-12 73.6 57 64.9
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 1.0e-11 73.2 57 61.4
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 1.0e-11 73.2 57 61.4
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 1.0e-11 73.2 58 58.6
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 1.3e-11 72.8 52 63.5
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 1.3e-11 72.8 57 64.9
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.3e-11 72.8 57 63.2
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 1.7e-11 72.4 59 61.0
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 2.3e-11 72.0 57 61.4
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 2.3e-11 72.0 57 63.2
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 2.9e-11 71.6 57 63.2
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 2.9e-11 71.6 59 61.0
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 2.9e-11 71.6 59 57.6
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 3.9e-11 71.2 57 59.6
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 5.0e-11 70.9 56 58.9
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 8.6e-11 70.1 59 59.3
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 8.6e-11 70.1 55 58.2
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 1.1e-10 69.7 55 61.8
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 1.5e-10 69.3 57 50.9
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 1.5e-10 69.3 58 56.9
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 1.9e-10 68.9 56 62.5
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 1.9e-10 68.9 58 56.9
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 2.5e-10 68.6 55 56.4
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 5.6e-10 67.4 58 53.4
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 5.6e-10 67.4 58 55.2
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 5.6e-10 67.4 52 61.5
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 5.6e-10 67.4 58 50.0
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 5.6e-10 67.4 60 53.3
HPP92_011012 Vanilla planifolia HOM05D006242 ORTHO05D007936 7.3e-10 67.0 52 63.5
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 9.5e-10 66.6 55 60.0
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 1.2e-09 66.2 57 49.1
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 1.2e-09 66.2 53 60.4
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 3.6e-09 64.7 54 53.7
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 3.6e-09 64.7 53 54.7
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 1.8e-08 62.4 57 47.4
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 1.8e-08 62.4 57 47.4
CiPaw.09G216300 Carya illinoinensis HOM05D006242 ORTHO05D007936 4.0e-08 61.2 44 63.6
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 5.2e-08 60.8 57 43.9
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 2.6e-07 58.5 84 42.9
Phvul.007G242466 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 2.2e-06 55.5 42 57.1


User provided reference genes

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