Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g05640 Coffea canephora HOM05D006242 ORTHO05D007936 2.5e-36 154.8 73 100.0
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 4.1e-31 137.5 68 94.1
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 6.5e-29 130.2 68 89.7
Cc09_g05680 Coffea canephora HOM05D006242 ORTHO05D007936 1.6e-27 125.6 65 90.8
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 6.8e-26 120.2 68 77.9
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 1.5e-25 119.0 68 80.9
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 2.6e-25 118.2 68 76.5
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 1.3e-24 115.9 68 75.0
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 4.9e-24 114.0 68 76.5
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 6.3e-24 113.6 67 79.1
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 6.3e-24 113.6 68 73.5
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 8.3e-24 113.2 68 72.1
Hma1.2p1_1499F.1_g287260 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 8.3e-24 113.2 68 72.1
Hma1.2p1_1700F.1_g298200 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 8.3e-24 113.2 68 72.1
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 8.3e-24 113.2 68 72.1
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 8.3e-24 113.2 68 73.5
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 1.4e-23 112.5 65 75.4
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 1.4e-23 112.5 65 75.4
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 1.8e-23 112.1 66 72.7
Sopen02g010240 Solanum pennellii HOM05D006242 ORTHO05D007936 1.8e-23 112.1 68 75.0
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 2.4e-23 111.7 68 75.0
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 3.1e-23 111.3 66 72.7
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 5.4e-23 110.5 67 70.1
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 5.4e-23 110.5 68 70.6
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 5.4e-23 110.5 68 73.5
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 9.1e-23 109.8 68 70.6
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 9.1e-23 109.8 65 73.8
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 9.1e-23 109.8 68 72.1
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 1.2e-22 109.4 68 70.6
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 1.2e-22 109.4 68 70.6
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 1.2e-22 109.4 68 73.5
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 1.6e-22 109.0 65 70.8
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 2.0e-22 108.6 68 69.1
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 2.0e-22 108.6 68 73.5
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 2.7e-22 108.2 65 70.8
GSVIVG01006138001 Vitis vinifera HOM05D006242 ORTHO05D007936 4.5e-22 107.5 68 70.6
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 4.5e-22 107.5 68 70.6
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 5.9e-22 107.1 68 69.1
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 5.9e-22 107.1 68 69.1
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 5.9e-22 107.1 68 69.1
SGA_v2.0_scaffold4G02502 Striga asiatica HOM05D006242 ORTHO05D007936 5.9e-22 107.1 69 75.4
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 5.9e-22 107.1 69 75.4
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 5.9e-22 107.1 68 72.1
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 7.7e-22 106.7 64 71.9
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 1.7e-21 105.5 68 72.1
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 1.7e-21 105.5 68 69.1
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 5.0e-21 104.0 68 75.0
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 5.0e-21 104.0 68 64.7
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 6.6e-21 103.6 69 72.5
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 8.6e-21 103.2 66 68.2
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 8.6e-21 103.2 66 68.2
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 8.6e-21 103.2 68 64.7
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 1.1e-20 102.8 67 67.2
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 1.5e-20 102.4 68 66.2
Glyma.20G074000 Glycine max HOM05D006242 ORTHO05D007936 1.5e-20 102.4 67 65.7
AUR62037908 Chenopodium quinoa HOM05D006242 ORTHO05D007936 1.9e-20 102.1 68 63.2
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 1.9e-20 102.1 67 67.2
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 1.9e-20 102.1 68 67.6
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 1.9e-20 102.1 64 68.8
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 2.5e-20 101.7 68 69.1
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 3.3e-20 101.3 68 69.1
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 3.3e-20 101.3 65 66.2
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 4.2e-20 100.9 64 70.3
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 4.2e-20 100.9 65 64.6
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 7.2e-20 100.1 67 62.7
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 7.2e-20 100.1 67 67.2
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 9.5e-20 99.8 65 64.6
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 1.2e-19 99.4 68 69.1
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.6e-19 99.0 65 64.6
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.6e-19 99.0 65 64.6
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 2.1e-19 98.6 67 62.7
Phvul.007G242500 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 2.8e-19 98.2 66 65.2
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 2.8e-19 98.2 68 64.7
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 3.6e-19 97.8 68 60.3
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 3.6e-19 97.8 65 67.7
Lj6g0012918 Lotus japonicus HOM05D006242 ORTHO05D007936 3.6e-19 97.8 66 65.2
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 3.6e-19 97.8 55 81.8
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 4.7e-19 97.4 68 67.6
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 6.1e-19 97.1 68 64.7
Aqoxy1G01391 Aquilegia oxysepala HOM05D006242 ORTHO05D007936 6.1e-19 97.1 67 62.7
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 6.1e-19 97.1 62 75.8
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 6.1e-19 97.1 67 64.2
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 1.4e-18 95.9 68 66.2
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 4.0e-18 94.4 65 63.1
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 5.2e-18 94.0 78 59.0
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 6.8e-18 93.6 68 61.8
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 8.9e-18 93.2 62 66.1
TPR.G22035 Trifolium pratense HOM05D006242 ORTHO05D007936 8.9e-18 93.2 66 62.1
Hund15670 Selenicereus undatus HOM05D006242 ORTHO05D007936 1.2e-17 92.8 67 55.2
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 1.5e-17 92.4 66 62.1
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 2.0e-17 92.0 53 79.2
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 3.4e-17 91.3 62 64.5
ATR1094G019 Amborella trichopoda HOM05D006242 ORTHO05D007936 9.8e-17 89.7 67 55.2
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 4.9e-16 87.4 55 65.5
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 6.3e-16 87.0 52 75.0
SHI14613 Sapria himalayana HOM05D000105 ORTHO05D000023 6.3e-16 87.0 55 67.3
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 1.4e-15 85.9 66 53.0
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 5.4e-15 84.0 65 55.4
HPP92_011011 Vanilla planifolia HOM05D006242 ORTHO05D007936 1.6e-14 82.4 67 53.7
Cc09_g05720 Coffea canephora HOM05D006242 ORTHO05D007936 5.9e-14 80.5 68 64.7
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 1.3e-13 79.3 70 52.9
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 5.0e-13 77.4 54 63.0
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 4.3e-12 74.3 54 59.3
VMungo0720G1734 Vigna mungo HOM05D006242 ORTHO05D007936 4.3e-12 74.3 65 55.4
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 6.1e-11 70.5 63 52.4
Os02g0173000 Oryza sativa ssp. japonica HOM05D006242 ORTHO05D007936 8.0e-11 70.1 53 58.5
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 5.8e-09 63.9 40 67.5
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 5.8e-09 63.9 36 72.2
CBR_g46754 Chara braunii HOM05D006242 ORTHO05D007936 1.7e-08 62.4 63 42.9
MCO04G402 Micromonas commoda HOM05D006242 ORTHO05D007936 3.7e-08 61.2 67 41.8
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 1.4e-07 59.3 68 44.1
AUR62040160 Chenopodium quinoa HOM05D006242 ORTHO05D007936 1.9e-07 58.9 68 42.6


User provided reference genes

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