Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 6.1e-161 570.9 305 100.0
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 1.7e-126 456.4 300 80.7
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 6.3e-126 454.5 300 78.7
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 1.4e-125 453.4 296 81.8
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 1.4e-125 453.4 297 79.8
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 7.0e-125 451.1 297 80.5
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 2.7e-124 449.1 301 78.7
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 4.5e-124 448.4 300 79.0
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 5.9e-124 448.0 298 78.5
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 7.7e-124 447.6 301 77.4
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 1.0e-123 447.2 305 77.4
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 1.7e-123 446.4 300 78.7
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 2.2e-123 446.0 301 78.1
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 2.2e-123 446.0 301 78.1
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 2.2e-123 446.0 301 78.1
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 2.9e-123 445.7 297 78.5
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 1.1e-122 443.7 297 79.1
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 1.5e-122 443.4 301 77.7
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 5.5e-122 441.4 305 77.0
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 1.6e-121 439.9 297 77.8
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 2.7e-121 439.1 297 77.1
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 1.4e-120 436.8 297 76.8
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 1.5e-119 433.3 303 73.9
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 3.4e-119 432.2 305 74.8
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 2.2e-118 429.5 299 74.6
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 2.2e-118 429.5 299 74.6
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 2.8e-118 429.1 305 73.4
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 6.3e-118 427.9 295 77.3
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 6.3e-118 427.9 300 75.0
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 6.3e-118 427.9 301 75.1
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 1.1e-117 427.2 302 73.2
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 1.4e-117 426.8 300 75.0
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 1.8e-117 426.4 294 76.9
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 4.1e-117 425.2 302 74.8
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 9.2e-117 424.1 301 73.4
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 1.2e-116 423.7 305 72.8
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 4.5e-116 421.8 295 75.3
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 7.7e-116 421.0 291 77.7
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 1.3e-115 420.2 295 74.9
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 1.7e-115 419.9 297 72.1
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 2.3e-115 419.5 296 74.7
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 5.0e-115 418.3 294 73.5
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 8.6e-115 417.5 301 73.1
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 1.1e-114 417.2 290 74.8
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 1.1e-114 417.2 301 73.1
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 1.5e-114 416.8 299 74.9
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 1.5e-114 416.8 305 72.5
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 2.5e-114 416.0 291 74.9
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 2.5e-114 416.0 296 72.6
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 2.5e-114 416.0 297 72.4
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 2.5e-114 416.0 297 74.1
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 4.3e-114 415.2 301 72.8
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 7.3e-114 414.5 297 72.1
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 9.5e-114 414.1 301 72.8
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 1.2e-113 413.7 298 73.5
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 1.2e-113 413.7 301 74.4
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 2.1e-113 412.9 281 76.5
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 4.7e-113 411.8 291 74.6
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 4.7e-113 411.8 296 73.3
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 8.0e-113 411.0 300 71.7
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 8.0e-113 411.0 300 71.7
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 1.0e-112 410.6 289 74.7
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 1.0e-112 410.6 281 76.9
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 1.4e-112 410.2 299 72.9
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 3.0e-112 409.1 305 71.1
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 3.0e-112 409.1 305 71.1
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 6.8e-112 407.9 301 72.1
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 8.9e-112 407.5 301 71.4
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 1.5e-111 406.8 299 73.6
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 2.0e-111 406.4 298 72.5
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 3.4e-111 405.6 296 72.0
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 7.5e-111 404.4 293 70.6
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 7.5e-111 404.4 305 70.8
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 1.3e-110 403.7 303 70.3
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 6.4e-110 401.4 300 69.3
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 6.4e-110 401.4 297 70.4
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 2.4e-109 399.4 304 69.1
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 4.1e-109 398.7 304 69.1
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 4.1e-109 398.7 306 68.6
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 4.1e-109 398.7 303 69.3
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 5.4e-109 398.3 305 68.5
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 2.7e-108 396.0 300 70.3
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 3.5e-108 395.6 297 70.7
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 4.6e-108 395.2 295 71.9
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 5.9e-108 394.8 304 68.1
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 5.9e-108 394.8 296 70.6
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 5.9e-108 394.8 292 69.2
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 1.0e-107 394.0 296 71.6
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 1.7e-107 393.3 290 71.0
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 1.9e-106 389.8 295 69.2
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 3.3e-106 389.0 303 66.3
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 5.6e-106 388.3 302 68.2
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 1.2e-105 387.1 303 69.0
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 2.1e-105 386.3 303 68.6
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.8e-105 386.0 281 73.7
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 1.5e-103 380.2 296 68.9
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 9.2e-101 370.9 281 71.5
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 7.8e-100 367.9 296 66.2
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 4.3e-98 362.1 273 71.8
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 7.3e-98 361.3 295 65.1
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 2.1e-97 359.8 306 63.1
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 8.9e-96 354.4 299 61.9
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 1.4e-93 347.1 290 61.7
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 6.0e-92 341.7 297 62.3
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 1.3e-91 340.5 281 65.1
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 3.5e-84 315.8 286 62.6
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 4.0e-80 302.4 229 72.1
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 3.9e-75 285.8 308 51.6
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 7.3e-74 281.6 195 75.4
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 4.0e-72 275.8 193 75.6
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 1.9e-69 266.9 291 53.3
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 3.1e-64 249.6 295 50.2
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 3.2e-61 239.6 195 67.7
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 5.5e-61 238.8 163 73.6
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 1.2e-60 237.7 296 49.0
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 4.8e-57 225.7 159 72.3
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 3.1e-56 223.0 338 43.8
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 1.2e-55 221.1 191 60.2
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 1.3e-51 207.6 297 45.8
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 2.5e-50 203.4 139 74.8
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 9.7e-50 201.4 134 78.4
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 5.0e-46 189.1 237 51.1
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 2.3e-43 180.3 208 51.9
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 2.1e-36 157.1 186 50.5
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 2.1e-36 157.1 115 73.9
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 4.6e-36 156.0 182 48.4
Nitab4.5_0011913g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 7.4e-34 148.7 95 77.9
Sp2g07050 Schrenkiella parvula HOM05D005754 ORTHO05D006843 1.7e-33 147.5 109 69.7
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 1.5e-31 141.0 289 37.0
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.2e-28 131.3 97 73.2
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 5.5e-21 105.9 86 65.1
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 1.3e-17 94.7 60 73.3
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 4.8e-17 92.8 284 31.0
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 4.1e-16 89.7 172 36.6
CsaV3_1G018460 Cucumis sativus L. HOM05D001859 ORTHO05D001836 5.0e-14 82.8 48 72.9
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 5.0e-14 82.8 303 28.7
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 6.5e-14 82.4 85 60.0
Hund00745 Selenicereus undatus HOM05D005754 ORTHO05D006843 5.5e-13 79.3 46 73.9
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 1.5e-10 71.2 150 34.7
BcaB06g28814 Brassica carinata HOM05D005754 ORTHO05D006843 2.7e-07 60.5 57 56.1


User provided reference genes

Program Settings