Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g05280 Coffea canephora HOM05D004829 ORTHO05D006212 1.2e-77 293.1 150 100.0
Lj1C1148G3 Lonicera japonica HOM05D004829 ORTHO05D006212 2.4e-57 225.7 134 79.9
CAN.G883.4 Capsicum annuum HOM05D004829 ORTHO05D006212 5.2e-57 224.6 136 79.4
FAN25G0809 Fragaria x ananassa HOM05D004829 ORTHO05D006212 8.9e-57 223.8 139 77.7
GSVIVG01012140001 Vitis vinifera HOM05D004829 ORTHO05D006212 8.9e-57 223.8 136 79.4
Solyc02g068380.3 Solanum lycopersicum HOM05D004829 ORTHO05D006212 2.6e-56 222.2 136 78.7
PGSC0003DMG400009430 Solanum tuberosum HOM05D004829 ORTHO05D006212 3.4e-56 221.9 136 78.7
Cfa000658 Carpinus fangiana HOM05D004829 ORTHO05D006212 4.4e-56 221.5 136 77.2
Nitab4.5_0000443g0210 Nicotiana tabacum HOM05D004829 ORTHO05D006212 1.3e-55 219.9 136 77.2
QL11p012432 Quercus lobata HOM05D004829 ORTHO05D006212 2.2e-55 219.2 136 77.2
Sopen02g017510 Solanum pennellii HOM05D004829 ORTHO05D006212 2.2e-55 219.2 136 77.9
Nitab4.5_0000973g0030 Nicotiana tabacum HOM05D004829 ORTHO05D006212 2.9e-55 218.8 136 76.5
CANSAT35G0413 Cannabis sativa HOM05D004829 ORTHO05D006212 3.8e-55 218.4 136 75.7
Haze_06166 Corylus avellana HOM05D004829 ORTHO05D006212 3.8e-55 218.4 134 76.1
Manes.16G050400 Manihot esculenta HOM05D004829 ORTHO05D006212 3.8e-55 218.4 136 79.4
Rhsim02G0252000 Rhododendron simsii HOM05D004829 ORTHO05D006212 3.8e-55 218.4 147 72.8
Dinv02919 Davidia involucrata HOM05D004829 ORTHO05D006212 4.9e-55 218.0 135 78.5
Dinv06747 Davidia involucrata HOM05D004829 ORTHO05D006212 4.9e-55 218.0 135 78.5
Thecc.02G004600 Theobroma cacao HOM05D004829 ORTHO05D006212 4.9e-55 218.0 134 78.4
Sc05g0004770 Simmondsia chinensis HOM05D004829 ORTHO05D006212 8.4e-55 217.2 139 74.8
FvH4_3g12850 Fragaria vesca HOM05D004829 ORTHO05D006212 1.1e-54 216.9 136 76.5
FAN11G0705 Fragaria x ananassa HOM05D004829 ORTHO05D006212 1.1e-54 216.9 136 76.5
DCAR_004342 Daucus carota HOM05D004829 ORTHO05D006212 1.4e-54 216.5 136 75.0
RcHm_v2.0_Chr5g0020891 Rosa chinensis HOM05D004829 ORTHO05D006212 1.9e-54 216.1 136 76.5
Ciclev10015120m.g Citrus clementina HOM05D004829 ORTHO05D006212 2.4e-54 215.7 134 76.1
Migut.M02005 Erythranthe guttata HOM05D004829 ORTHO05D006212 2.4e-54 215.7 136 75.7
FAN21G1515 Fragaria x ananassa HOM05D004829 ORTHO05D006212 2.4e-54 215.7 136 76.5
CSS0024116 Camellia sinensis var. sinensis HOM05D004829 ORTHO05D006212 3.2e-54 215.3 136 75.7
Peaxi162Scf00981g00019 Petunia axillaris HOM05D004829 ORTHO05D006212 4.1e-54 214.9 132 78.8
TAR624G1024 Trochodendron aralioides HOM05D004829 ORTHO05D006212 4.1e-54 214.9 136 76.5
COL.COLO4_18027 Corchorus olitorius HOM05D004829 ORTHO05D006212 5.4e-54 214.5 134 76.9
MD10G1228200 Malus domestica HOM05D004829 ORTHO05D006212 7.1e-54 214.2 137 75.9
Potri.001G160100 Populus trichocarpa HOM05D004829 ORTHO05D006212 7.1e-54 214.2 134 76.1
arahy.Tifrunner.gnm1.ann1.503GVQ Arachis hypogaea HOM05D004829 ORTHO05D006212 9.2e-54 213.8 133 75.2
arahy.Tifrunner.gnm1.ann1.84NU8G Arachis hypogaea HOM05D004829 ORTHO05D006212 9.2e-54 213.8 133 75.2
RcHm_v2.0_Chr1g0315031 Rosa chinensis HOM05D004829 ORTHO05D006212 9.2e-54 213.8 136 75.7
Hma1.2p1_0088F.1_g045100 Hydrangea macrophylla HOM05D004829 ORTHO05D006212 1.2e-53 213.4 136 74.3
SGA_v2.0_scaffold175G39334 Striga asiatica HOM05D004829 ORTHO05D006212 1.6e-53 213.0 136 73.5
Atru.chr10.381 Acer truncatum HOM05D004829 ORTHO05D006212 2.7e-53 212.2 133 75.2
MSTRG.21238 Avicennia marina HOM05D004829 ORTHO05D006212 2.7e-53 212.2 136 73.5
AUR62040483 Chenopodium quinoa HOM05D004829 ORTHO05D006212 2.7e-53 212.2 133 76.7
Prupe.4G116700 Prunus persica HOM05D004829 ORTHO05D006212 3.5e-53 211.8 137 74.5
RcHm_v2.0_Chr5g0020791 Rosa chinensis HOM05D004829 ORTHO05D006212 3.5e-53 211.8 136 73.5
Gohir.A12G049400 Gossypium hirsutum HOM05D004829 ORTHO05D006212 4.6e-53 211.5 134 75.4
Gorai.008G050700 Gossypium raimondii HOM05D004829 ORTHO05D006212 4.6e-53 211.5 134 75.4
RcHm_v2.0_Chr1g0315381 Rosa chinensis HOM05D004829 ORTHO05D006212 4.6e-53 211.5 141 73.0
Hma1.2p1_0088F.1_g045110 Hydrangea macrophylla HOM05D004829 ORTHO05D006212 6.0e-53 211.1 133 75.2
PGR004G1679 Punica granatum HOM05D004829 ORTHO05D006212 6.0e-53 211.1 134 74.6
RcHm_v2.0_Chr1g0315311 Rosa chinensis HOM05D004829 ORTHO05D006212 7.8e-53 210.7 141 72.3
HanXRQChr12g0378241 Helianthus annuus HOM05D004829 ORTHO05D006212 1.0e-52 210.3 136 74.3
AUR62042800 Chenopodium quinoa HOM05D004829 ORTHO05D006212 1.3e-52 209.9 133 75.2
Duzib132G0434 Durio zibethinus HOM05D004829 ORTHO05D006212 1.7e-52 209.5 134 76.1
Gohir.D12G047800 Gossypium hirsutum HOM05D004829 ORTHO05D006212 1.7e-52 209.5 134 74.6
Lalb_Chr15g0083721 Lupinus albus HOM05D004829 ORTHO05D006212 1.7e-52 209.5 133 71.4
Actinidia33705 Actinidia chinensis HOM05D004829 ORTHO05D006212 2.3e-52 209.1 134 73.9
EL10Ac7g17240 Beta vulgaris HOM05D004829 ORTHO05D006212 2.3e-52 209.1 145 71.7
Glyma.15G156900 Glycine max HOM05D004829 ORTHO05D006212 3.9e-52 208.4 133 72.9
Medtr2g035405 Medicago truncatula HOM05D004829 ORTHO05D006212 6.6e-52 207.6 133 73.7
unitig_92.g28192 Utricularia gibba HOM05D004829 ORTHO05D006212 6.6e-52 207.6 136 73.5
THA.LOC104811816 Tarenaya hassleriana HOM05D004829 ORTHO05D006212 8.6e-52 207.2 138 72.5
Lalb_Chr18g0052051 Lupinus albus HOM05D004829 ORTHO05D006212 1.1e-51 206.8 133 72.9
VMungo1309G0038 Vigna mungo HOM05D004829 ORTHO05D006212 1.1e-51 206.8 133 72.2
Lsat_1_v5_gn_5_44281 Lactuca sativa HOM05D004829 ORTHO05D006212 1.5e-51 206.5 136 72.8
Glyma.09G050800 Glycine max HOM05D004829 ORTHO05D006212 1.9e-51 206.1 133 72.2
MELO3C002403.2 Cucumis melo HOM05D004829 ORTHO05D006212 4.3e-51 204.9 136 73.5
Lj6g0020245 Lotus japonicus HOM05D004829 ORTHO05D006212 5.6e-51 204.5 133 72.2
ClCG03G004200 Citrullus lanatus HOM05D004829 ORTHO05D006212 7.3e-51 204.1 136 72.8
ECA246G2495 Erigeron canadensis HOM05D004829 ORTHO05D006212 7.3e-51 204.1 136 71.3
PSO541G1671 Papaver somniferum HOM05D004829 ORTHO05D006212 7.3e-51 204.1 136 72.1
Aqoxy1G01392 Aquilegia oxysepala HOM05D004829 ORTHO05D006212 1.6e-50 203.0 136 69.1
Ca_01990_v3 Cicer arietinum L. HOM05D004829 ORTHO05D006212 1.6e-50 203.0 133 72.2
PSO675G5466 Papaver somniferum HOM05D004829 ORTHO05D006212 2.1e-50 202.6 136 72.1
Sabra01G0132000 Salix brachista HOM05D004829 ORTHO05D006212 2.1e-50 202.6 143 71.3
Sed0007455 Sechium edule HOM05D004829 ORTHO05D006212 2.1e-50 202.6 136 71.3
CsaV3_1G010130 Cucumis sativus L. HOM05D004829 ORTHO05D006212 4.7e-50 201.4 136 71.3
BraA03t14305Z Brassica rapa HOM05D004829 ORTHO05D006212 8.1e-50 200.7 146 67.1
AT4G20070 Arabidopsis thaliana HOM05D004829 ORTHO05D006212 1.1e-49 200.3 136 69.9
A03p52300 Brassica napus HOM05D004829 ORTHO05D006212 1.1e-49 200.3 136 70.6
BolC7t45575H Brassica oleracea HOM05D004829 ORTHO05D006212 1.1e-49 200.3 136 71.3
TWI38G0011 Tripterygium wilfordii HOM05D004829 ORTHO05D006212 1.8e-49 199.5 136 68.4
BcaC06g30644 Brassica carinata HOM05D004829 ORTHO05D006212 3.1e-49 198.7 136 69.9
BcaNung03491 Brassica carinata HOM05D004829 ORTHO05D006212 3.1e-49 198.7 136 70.6
C07p50740 Brassica napus HOM05D004829 ORTHO05D006212 3.1e-49 198.7 136 70.6
Carub.0007s2106 Capsella rubella HOM05D004829 ORTHO05D006212 5.2e-49 198.0 136 69.9
Sp7g18530 Schrenkiella parvula HOM05D004829 ORTHO05D006212 5.2e-49 198.0 136 69.9
TPR.G135 Trifolium pratense HOM05D004829 ORTHO05D006212 9.0e-49 197.2 133 69.9
AL7G33780 Arabidopsis lyrata HOM05D004829 ORTHO05D006212 2.0e-48 196.1 136 67.6
Hund18001 Selenicereus undatus HOM05D004829 ORTHO05D006212 2.6e-48 195.7 138 68.8
Thhalv10024702m.g Eutrema salsugineum HOM05D004829 ORTHO05D006212 3.4e-48 195.3 132 71.2
CARHR226880 Cardamine hirsuta HOM05D004829 ORTHO05D006212 4.4e-48 194.9 136 68.4
QL11p012412 Quercus lobata HOM05D004829 ORTHO05D006212 1.7e-47 193.0 136 72.1
Thhalv10025370m.g Eutrema salsugineum HOM05D004829 ORTHO05D006212 2.9e-47 192.2 137 67.2
Aa31LG6G2480 Aethionema arabicum HOM05D004829 ORTHO05D006212 4.9e-47 191.4 134 67.2
Eucgr.D00017 Eucalyptus grandis HOM05D004829 ORTHO05D006212 6.4e-47 191.0 163 62.6
RcHm_v2.0_Chr1g0315241 Rosa chinensis HOM05D004829 ORTHO05D006212 6.4e-47 191.0 124 73.4
TWI63G0224 Tripterygium wilfordii HOM05D004829 ORTHO05D006212 1.4e-46 189.9 133 67.7
RcHm_v2.0_Chr1g0315541 Rosa chinensis HOM05D004829 ORTHO05D006212 1.9e-46 189.5 124 73.4
ATR0752G197 Amborella trichopoda HOM05D004829 ORTHO05D006212 1.2e-45 186.8 136 66.2
MBI18_g00538_MAGBIO Magnolia biondii HOM05D004829 ORTHO05D006212 1.6e-45 186.4 161 59.0
RcHm_v2.0_Chr1g0315611 Rosa chinensis HOM05D004829 ORTHO05D006212 2.1e-45 186.0 120 74.2
RcHm_v2.0_Chr1g0315201 Rosa chinensis HOM05D004829 ORTHO05D006212 1.7e-44 183.0 124 71.8
RcHm_v2.0_Chr1g0315091 Rosa chinensis HOM05D004829 ORTHO05D006212 3.0e-44 182.2 119 73.9
RcHm_v2.0_Chr5g0021521 Rosa chinensis HOM05D004829 ORTHO05D006212 3.9e-44 181.8 112 76.8
RcHm_v2.0_Chr1g0315471 Rosa chinensis HOM05D004829 ORTHO05D006212 1.4e-41 173.3 126 69.0
HPP92_026370 Vanilla planifolia HOM05D004829 ORTHO05D006212 1.2e-40 170.2 137 61.3
SEGI_28835 Sequoiadendron giganteum HOM05D004829 ORTHO05D006212 1.1e-38 163.7 137 56.9
HPP92_016420 Vanilla planifolia HOM05D004829 ORTHO05D006212 1.9e-38 162.9 137 58.4
RcHm_v2.0_Chr1g0315061 Rosa chinensis HOM05D004829 ORTHO05D006212 3.9e-36 155.2 125 66.4
Zm00001eb389820 Zea mays HOM05D004829 ORTHO05D006212 1.6e-34 149.8 135 54.8
SMO117G0201 Selaginella moellendorffii HOM05D004829 ORTHO05D006212 1.8e-33 146.4 143 51.7
Oeu046922.1 Olea europaea HOM05D004829 ORTHO05D006212 4.0e-33 145.2 94 72.3
Mapoly0026s0071 Marchantia polymorpha HOM05D004829 ORTHO05D006212 5.3e-33 144.8 142 51.4
RcHm_v2.0_Chr1g0315441 Rosa chinensis HOM05D004829 ORTHO05D006212 9.0e-33 144.1 95 71.6
Pp3c13_1740 Physcomitrium patens HOM05D004829 ORTHO05D006212 1.5e-32 143.3 145 50.3
Os06g0665500 Oryza sativa ssp. japonica HOM05D004829 ORTHO05D006212 2.6e-32 142.5 136 51.5
RcHm_v2.0_Chr1g0315581 Rosa chinensis HOM05D004829 ORTHO05D006212 5.8e-32 141.4 100 71.0
Pp3c3_1160 Physcomitrium patens HOM05D004829 ORTHO05D006212 9.9e-32 140.6 145 47.6
Lalb_Chr02g0154131 Lupinus albus HOM05D004829 ORTHO05D006212 1.7e-31 139.8 92 69.6
AagrBONN_evm.TU.Sc2ySwM_344.4392 Anthoceros agrestis HOM05D004829 ORTHO05D006212 2.7e-29 132.5 140 45.7
RcHm_v2.0_Chr1g0315141 Rosa chinensis HOM05D004829 ORTHO05D006212 1.1e-25 120.6 97 64.9
RcHm_v2.0_Chr5g0021441 Rosa chinensis HOM05D004829 ORTHO05D006212 1.0e-23 114.0 61 83.6
Ah.15g091890 Amaranthus hybridus HOM05D004829 ORTHO05D006212 4.2e-22 108.6 133 45.9
Cre13.g580700 Chlamydomonas reinhardtii HOM05D004829 ORTHO05D006212 4.6e-21 105.1 147 44.2
RcHm_v2.0_Chr5g0029451 Rosa chinensis HOM05D004829 ORTHO05D006212 7.4e-19 97.8 66 69.7
CDE03G0346 Ceratophyllum demersum HOM05D004829 ORTHO05D006212 3.7e-18 95.5 89 52.8
MCO01G784 Micromonas commoda HOM05D004829 ORTHO05D006212 1.8e-17 93.2 156 35.9
Pp3s42_40 Physcomitrium patens HOM05D004829 ORTHO05D034576 2.5e-14 82.8 118 36.4
Aqoxy1G01394 Aquilegia oxysepala HOM05D004829 ORTHO05D006212 1.6e-13 80.1 61 63.9
RcHm_v2.0_Chr1g0315151 Rosa chinensis HOM05D004829 ORTHO05D006212 6.9e-09 64.7 31 87.1
CBR_g40439 Chara braunii HOM05D005428 ORTHO05D006876 1.3e-07 60.5 126 31.0
Nn7g38320 Nelumbo nucifera HOM05D004829 ORTHO05D006212 6.5e-07 58.2 40 65.0


User provided reference genes

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