Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 5.5e-195 684.1 341 100.0
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 9.7e-176 620.2 325 95.7
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 4.4e-144 515.0 324 76.2
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 1.9e-142 509.6 324 75.3
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 3.3e-139 498.8 324 74.7
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 3.3e-139 498.8 324 75.0
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 3.1e-137 492.3 323 73.4
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 8.9e-137 490.7 324 73.5
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 1.4e-134 483.4 323 70.9
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 1.9e-134 483.0 318 73.0
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 4.1e-134 481.9 329 70.8
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 4.3e-131 471.9 318 71.4
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 5.6e-131 471.5 324 70.1
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 3.6e-130 468.8 329 69.0
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 1.1e-129 467.2 346 65.9
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 1.4e-129 466.8 330 67.3
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 8.9e-129 464.2 326 69.0
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 1.2e-128 463.8 340 67.9
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 5.8e-128 461.5 330 68.5
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 8.4e-127 457.6 330 69.4
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 1.1e-126 457.2 330 66.4
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.4e-126 456.8 327 68.2
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 2.4e-126 456.1 327 67.9
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 3.2e-126 455.7 322 69.3
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 4.1e-126 455.3 296 74.0
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 4.1e-126 455.3 327 68.5
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 5.4e-126 454.9 327 68.2
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 1.2e-125 453.8 327 68.2
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 2.7e-125 452.6 324 66.0
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 7.8e-125 451.1 358 62.3
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.0e-124 450.7 327 67.9
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 3.9e-124 448.7 331 66.5
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 5.1e-124 448.4 328 65.9
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 6.6e-124 448.0 323 66.3
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 9.6e-123 444.1 323 65.9
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 2.1e-122 443.0 318 64.5
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 2.8e-122 442.6 326 65.6
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 3.6e-122 442.2 356 61.2
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 8.1e-122 441.0 323 65.3
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 8.1e-122 441.0 328 63.1
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 1.1e-121 440.7 323 65.3
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 1.1e-121 440.7 323 65.9
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 1.4e-121 440.3 323 65.9
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 1.4e-121 440.3 330 64.5
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 1.8e-121 439.9 323 65.9
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 2.4e-121 439.5 330 64.5
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 3.1e-121 439.1 323 65.6
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 3.1e-121 439.1 323 65.6
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 3.1e-121 439.1 356 61.2
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 4.0e-121 438.7 323 65.6
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 5.2e-121 438.3 331 65.3
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 6.8e-121 438.0 326 65.0
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 6.8e-121 438.0 322 68.3
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 1.2e-120 437.2 328 63.7
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 2.0e-120 436.4 326 64.7
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 2.6e-120 436.0 329 64.4
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 3.4e-120 435.6 324 64.2
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 5.8e-120 434.9 329 63.8
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 7.6e-120 434.5 333 63.7
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 7.6e-120 434.5 323 66.3
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 9.9e-120 434.1 376 59.3
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 2.2e-119 433.0 333 63.4
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 4.9e-119 431.8 337 62.3
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 6.4e-119 431.4 323 64.7
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 6.4e-119 431.4 328 63.1
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 1.1e-118 430.6 323 63.5
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 1.9e-118 429.9 323 63.8
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 1.9e-118 429.9 337 62.3
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 4.2e-118 428.7 316 67.4
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 4.2e-118 428.7 324 63.3
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 9.3e-118 427.6 324 63.0
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 6.0e-117 424.9 337 62.6
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 1.3e-116 423.7 324 62.3
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 1.1e-115 420.6 324 61.7
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 1.9e-115 419.9 385 57.7
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 5.6e-115 418.3 323 62.8
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.6e-114 416.8 343 63.0
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 2.8e-114 416.0 330 62.7
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.4e-113 413.7 343 62.4
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 6.9e-113 411.4 292 67.1
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 1.2e-112 410.6 336 61.6
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 4.6e-109 398.7 322 61.2
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 6.0e-109 398.3 326 61.3
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 1.1e-107 394.0 351 58.1
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 2.5e-107 392.9 319 61.4
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 5.6e-107 391.7 292 67.5
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 7.4e-107 391.3 326 60.7
TWI63G1157 Tripterygium wilfordii HOM05D005903 ORTHO05D007293 2.1e-106 389.8 330 60.0
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 8.1e-106 387.9 332 58.4
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 3.4e-104 382.5 335 59.4
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 3.4e-104 382.5 255 74.9
PSO675G2002 Papaver somniferum HOM05D005903 ORTHO05D007293 5.8e-104 381.7 323 57.9
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 1.7e-103 380.2 324 60.2
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 1.4e-102 377.1 250 69.6
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 4.2e-102 375.6 332 56.6
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 6.7e-100 368.2 293 63.5
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 2.4e-97 359.8 276 65.2
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 9.3e-94 347.8 244 70.9
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 9.3e-94 347.8 230 70.4
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 4.6e-93 345.5 263 65.0
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 2.0e-88 330.1 325 52.6
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 2.2e-87 326.6 333 54.1
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 7.2e-86 321.6 341 49.6
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 6.3e-82 308.5 326 50.6
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 2.9e-79 299.7 193 70.5
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 1.9e-78 297.0 193 71.0
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 1.7e-74 283.9 225 61.8
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.3e-71 274.2 233 57.9
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 1.4e-70 270.8 345 42.0
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 2.7e-69 266.5 323 44.0
Oeu056062.1 Olea europaea HOM05D005903 ORTHO05D007293 7.9e-69 265.0 159 75.5
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 5.2e-68 262.3 327 43.1
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 4.8e-66 255.8 331 42.6
unitig_46.g18341 Utricularia gibba HOM05D005903 ORTHO05D007293 3.1e-65 253.1 324 46.9
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 1.3e-50 204.5 169 60.4
Sc04g0004120 Simmondsia chinensis HOM05D005903 ORTHO05D007293 5.0e-47 192.6 122 70.5
Sc04g0004130 Simmondsia chinensis HOM05D005903 ORTHO05D007293 5.0e-47 192.6 166 59.6
Os11g0549690 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.1e-46 191.4 165 55.2
Cfa024540 Carpinus fangiana HOM05D005903 ORTHO05D007293 2.8e-42 176.8 319 36.7
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 6.6e-39 165.6 200 53.0
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 4.3e-38 162.9 348 33.0
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 2.1e-37 160.6 166 46.4
Lalb_Chr07g0188221 Lupinus albus HOM05D005903 ORTHO05D007293 2.0e-35 154.1 153 52.3
Cre10.g436900 Chlamydomonas reinhardtii HOM05D005903 ORTHO05D007293 1.1e-33 148.3 315 33.7
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 1.6e-32 144.4 144 55.6
CARHR106840 Cardamine hirsuta HOM05D005903 ORTHO05D007293 5.8e-27 125.9 120 55.0
PRCOL_00001260 Prasinoderma coloniale HOM05D005903 ORTHO05D007293 1.1e-25 121.7 353 29.5
CAN.G508.15 Capsicum annuum HOM05D005903 ORTHO05D007293 4.7e-21 106.3 245 31.4
COL.COLO4_05792 Corchorus olitorius HOM05D005903 ORTHO05D007293 9.9e-19 98.6 75 64.0
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 4.6e-16 89.7 60 70.0
Oeu056063.2 Olea europaea HOM05D007234 ORTHO05D008488 3.0e-15 87.0 65 70.8
Os05g0295700 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.4e-12 78.2 59 54.2
SHI32711 Sapria himalayana HOM05D005903 ORTHO05D007293 4.9e-10 69.7 48 58.3
Cfa001138 Carpinus fangiana HOM05D000398 ORTHO05D000551 6.4e-10 69.3 65 55.4
Migut.O00469 Erythranthe guttata HOM05D000398 ORTHO05D000551 2.3e-07 60.8 63 55.6
SHI32710 Sapria himalayana HOM05D005903 ORTHO05D007293 5.1e-07 59.7 84 45.2
CBR_g8146 Chara braunii HOM05D005903 ORTHO05D000048 6.6e-07 59.3 66 42.4


User provided reference genes

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