Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g04960 Coffea canephora HOM05D005227 ORTHO05D006379 1.3e-61 239.6 124 100.0
CSS0013199 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 4.2e-44 181.4 102 90.2
Dinv32750 Davidia involucrata HOM05D005227 ORTHO05D006379 7.2e-44 180.6 102 87.3
Peaxi162Scf00890g00011 Petunia axillaris HOM05D005227 ORTHO05D006379 2.7e-43 178.7 102 87.3
PGSC0003DMG400031097 Solanum tuberosum HOM05D005227 ORTHO05D006379 1.0e-42 176.8 102 86.3
CAN.G585.8 Capsicum annuum HOM05D005227 ORTHO05D006379 3.9e-42 174.9 102 85.3
Sopen07g029430 Solanum pennellii HOM05D005227 ORTHO05D006379 3.9e-42 174.9 102 85.3
Nitab4.5_0000743g0160 Nicotiana tabacum HOM05D005227 ORTHO05D006379 5.1e-42 174.5 102 85.3
Solyc07g056070.2 Solanum lycopersicum HOM05D005227 ORTHO05D006379 2.0e-41 172.6 102 83.3
SGA_v2.0_scaffold1G00678 Striga asiatica HOM05D005227 ORTHO05D006379 4.3e-41 171.4 101 82.2
Dinv26307 Davidia involucrata HOM05D005227 ORTHO05D006379 5.7e-41 171.0 102 83.3
Peaxi162Scf00254g00421 Petunia axillaris HOM05D005227 ORTHO05D006379 5.7e-41 171.0 97 87.6
Sopen07g027180 Solanum pennellii HOM05D005227 ORTHO05D006379 7.4e-41 170.6 102 82.4
PGSC0003DMG401020444 Solanum tuberosum HOM05D005227 ORTHO05D006379 7.4e-41 170.6 102 82.4
Solyc07g055030.1 Solanum lycopersicum HOM05D005227 ORTHO05D006379 2.2e-40 169.1 102 81.4
Atru.chr8.505 Acer truncatum HOM05D005227 ORTHO05D006379 3.7e-40 168.3 102 82.4
Thecc.03G046200 Theobroma cacao HOM05D005227 ORTHO05D006379 3.7e-40 168.3 102 82.4
QL08p045548 Quercus lobata HOM05D005227 ORTHO05D006379 4.8e-40 167.9 102 81.4
MELO3C002397.2 Cucumis melo HOM05D005227 ORTHO05D006379 8.2e-40 167.2 105 79.0
CsaV3_1G010070 Cucumis sativus L. HOM05D005227 ORTHO05D006379 8.2e-40 167.2 104 80.8
Actinidia33652 Actinidia chinensis HOM05D005227 ORTHO05D006379 1.1e-39 166.8 102 82.4
MSTRG.21442 Avicennia marina HOM05D005227 ORTHO05D006379 1.1e-39 166.8 101 82.2
QL07p000144 Quercus lobata HOM05D005227 ORTHO05D006379 1.1e-39 166.8 102 80.4
ClCG03G004140 Citrullus lanatus HOM05D005227 ORTHO05D006379 1.4e-39 166.4 102 81.4
Nn7g38372 Nelumbo nucifera HOM05D005227 ORTHO05D006379 1.4e-39 166.4 99 82.8
Lalb_Chr10g0097141 Lupinus albus HOM05D005227 ORTHO05D006379 1.8e-39 166.0 102 81.4
GSVIVG01012160001 Vitis vinifera HOM05D005227 ORTHO05D006379 2.4e-39 165.6 102 83.3
Atru.chr9.939 Acer truncatum HOM05D005227 ORTHO05D006379 3.1e-39 165.2 102 81.4
CiPaw.09G138800 Carya illinoinensis HOM05D005227 ORTHO05D006379 5.3e-39 164.5 102 79.4
Migut.D00502 Erythranthe guttata HOM05D005227 ORTHO05D006379 6.9e-39 164.1 107 77.6
Nitab4.5_0001904g0080 Nicotiana tabacum HOM05D005227 ORTHO05D006379 6.9e-39 164.1 102 79.4
Sed0019581 Sechium edule HOM05D005227 ORTHO05D006379 6.9e-39 164.1 102 79.4
Duzib084G1247 Durio zibethinus HOM05D005227 ORTHO05D006379 1.5e-38 162.9 102 77.5
PGR004G2312 Punica granatum HOM05D005227 ORTHO05D006379 2.0e-38 162.5 102 80.4
TWI81G0571 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 2.0e-38 162.5 102 80.4
Glyma.07G072800 Glycine max HOM05D005227 ORTHO05D006379 3.4e-38 161.8 102 78.4
unitig_8.g3748 Utricularia gibba HOM05D005227 ORTHO05D006379 3.4e-38 161.8 102 77.5
Manes.03G071400 Manihot esculenta HOM05D005227 ORTHO05D006379 4.5e-38 161.4 102 78.4
Prupe.1G101300 Prunus persica HOM05D005227 ORTHO05D006379 5.9e-38 161.0 102 78.4
HanXRQChr01g0006241 Helianthus annuus HOM05D005227 ORTHO05D006379 7.7e-38 160.6 104 75.0
Cpa.g.c40334 Carica papaya HOM05D005227 ORTHO05D006379 1.0e-37 160.2 102 78.4
Cfa001143 Carpinus fangiana HOM05D005227 ORTHO05D006379 1.3e-37 159.8 102 76.5
HanXRQChr01g0006251 Helianthus annuus HOM05D005227 ORTHO05D006379 1.3e-37 159.8 99 79.8
Duzib205G0364 Durio zibethinus HOM05D005227 ORTHO05D006379 1.7e-37 159.5 107 72.0
TWI15G1171 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 1.7e-37 159.5 102 77.5
ATR0752G166 Amborella trichopoda HOM05D005227 ORTHO05D006379 2.2e-37 159.1 98 78.6
COL.COLO4_36891 Corchorus olitorius HOM05D005227 ORTHO05D006379 2.2e-37 159.1 102 76.5
Gohir.A11G165700 Gossypium hirsutum HOM05D005227 ORTHO05D006379 2.2e-37 159.1 102 77.5
arahy.Tifrunner.gnm1.ann1.59GI1K Arachis hypogaea HOM05D005227 ORTHO05D006379 3.8e-37 158.3 99 79.8
arahy.Tifrunner.gnm1.ann1.GL2DWM Arachis hypogaea HOM05D005227 ORTHO05D006379 3.8e-37 158.3 99 79.8
Haze_05241 Corylus avellana HOM05D005227 ORTHO05D006379 3.8e-37 158.3 102 76.5
Gohir.D11G171900 Gossypium hirsutum HOM05D005227 ORTHO05D006379 3.8e-37 158.3 102 76.5
Gorai.007G184300 Gossypium raimondii HOM05D005227 ORTHO05D006379 3.8e-37 158.3 102 76.5
Lalb_Chr17g0339811 Lupinus albus HOM05D005227 ORTHO05D006379 5.0e-37 157.9 102 75.5
PGR142G0063 Punica granatum HOM05D005227 ORTHO05D006379 5.0e-37 157.9 102 79.4
TAR627G1207 Trochodendron aralioides HOM05D005227 ORTHO05D006379 5.0e-37 157.9 102 77.5
Thhalv10001080m.g Eutrema salsugineum HOM05D005227 ORTHO05D006379 6.5e-37 157.5 104 73.1
Sed0010668 Sechium edule HOM05D005227 ORTHO05D006379 6.5e-37 157.5 102 76.5
Glyma.03G013100 Glycine max HOM05D005227 ORTHO05D006379 8.5e-37 157.1 102 76.5
Lsat_1_v5_gn_5_150700 Lactuca sativa HOM05D005227 ORTHO05D006379 8.5e-37 157.1 98 78.6
AL8G14830 Arabidopsis lyrata HOM05D005227 ORTHO05D006379 1.1e-36 156.8 102 74.5
Sc15g0005680 Simmondsia chinensis HOM05D005227 ORTHO05D006379 1.1e-36 156.8 99 74.7
CANSAT21G1070 Cannabis sativa HOM05D005227 ORTHO05D006379 1.4e-36 156.4 100 76.0
THA.LOC104806226 Tarenaya hassleriana HOM05D005227 ORTHO05D006379 3.2e-36 155.2 102 73.5
AT5G44710 Arabidopsis thaliana HOM05D005227 ORTHO05D006379 4.2e-36 154.8 102 73.5
Ciclev10017275m.g Citrus clementina HOM05D005227 ORTHO05D006379 4.2e-36 154.8 99 76.8
FAN21G2110 Fragaria x ananassa HOM05D005227 ORTHO05D006379 4.2e-36 154.8 101 76.2
arahy.Tifrunner.gnm1.ann1.BUN8CC Arachis hypogaea HOM05D005227 ORTHO05D006379 7.2e-36 154.1 101 77.2
EL10Ac4g09705 Beta vulgaris HOM05D005227 ORTHO05D006379 7.2e-36 154.1 95 75.8
Carub.0001s3436 Capsella rubella HOM05D005227 ORTHO05D006379 7.2e-36 154.1 102 72.5
RcHm_v2.0_Chr3g0492041 Rosa chinensis HOM05D005227 ORTHO05D006379 7.2e-36 154.1 101 74.3
Phvul.010G097600 Phaseolus vulgaris HOM05D005227 ORTHO05D006379 9.4e-36 153.7 98 78.6
AUR62042297 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.2e-35 153.3 101 71.3
FvH4_3g13100 Fragaria vesca HOM05D005227 ORTHO05D006379 1.2e-35 153.3 101 75.2
FAN11G3694 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.2e-35 153.3 101 75.2
FAN16G1292 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.2e-35 153.3 101 75.2
MD05G1245000 Malus domestica HOM05D005227 ORTHO05D006379 1.2e-35 153.3 94 79.8
RcHm_v2.0_Chr5g0021361 Rosa chinensis HOM05D005227 ORTHO05D006379 1.2e-35 153.3 101 74.3
HPP92_006340 Vanilla planifolia HOM05D005227 ORTHO05D006379 1.2e-35 153.3 98 76.5
BcaC06g31592 Brassica carinata HOM05D005227 ORTHO05D006379 2.1e-35 152.5 102 72.5
BcaC06g31593 Brassica carinata HOM05D005227 ORTHO05D006379 2.1e-35 152.5 102 72.5
CARHR178190 Cardamine hirsuta HOM05D005227 ORTHO05D006379 2.1e-35 152.5 102 72.5
Cfa001148 Carpinus fangiana HOM05D005227 ORTHO05D006379 2.1e-35 152.5 102 73.5
Eucgr.D00008 Eucalyptus grandis HOM05D005227 ORTHO05D006379 2.7e-35 152.1 99 73.7
BcaC03g16691 Brassica carinata HOM05D005227 ORTHO05D006379 3.6e-35 151.8 109 69.7
Oeu041343.1 Olea europaea HOM05D005227 ORTHO05D006379 3.6e-35 151.8 97 78.4
A02p28550 Brassica napus HOM05D005227 ORTHO05D006379 4.7e-35 151.4 102 72.5
BraA02t07892Z Brassica rapa HOM05D005227 ORTHO05D006379 4.7e-35 151.4 102 72.5
MD10G1226300 Malus domestica HOM05D005227 ORTHO05D006379 4.7e-35 151.4 94 80.9
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 6.1e-35 151.0 105 69.5
BolC2t10561H Brassica oleracea HOM05D005227 ORTHO05D006379 7.9e-35 150.6 101 73.3
BraA06t27572Z Brassica rapa HOM05D005227 ORTHO05D006379 7.9e-35 150.6 103 71.8
BcaB07g30501 Brassica carinata HOM05D005227 ORTHO05D006379 1.0e-34 150.2 102 71.6
C07p27610 Brassica napus HOM05D005227 ORTHO05D006379 1.4e-34 149.8 103 69.9
BcaC06g34520 Brassica carinata HOM05D005227 ORTHO05D006379 1.8e-34 149.4 102 70.6
Carub.0008s0355 Capsella rubella HOM05D005227 ORTHO05D006379 1.8e-34 149.4 102 70.6
ECA248G3549 Erigeron canadensis HOM05D005227 ORTHO05D006379 2.3e-34 149.1 102 73.5
SalBow2G2250 Salvia bowleyana HOM05D005227 ORTHO05D006379 3.0e-34 148.7 99 75.8
Aqoxy1G01370 Aquilegia oxysepala HOM05D005227 ORTHO05D006379 5.1e-34 147.9 97 74.2
BcaB07g30937 Brassica carinata HOM05D005227 ORTHO05D006379 5.1e-34 147.9 102 70.6
Lj3g0019179 Lotus japonicus HOM05D005227 ORTHO05D006379 5.1e-34 147.9 102 72.5
Glyma.03G084100 Glycine max HOM05D005227 ORTHO05D006379 6.7e-34 147.5 98 75.5
Sp2g09520 Schrenkiella parvula HOM05D005227 ORTHO05D006379 6.7e-34 147.5 102 70.6
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 1.1e-33 146.7 99 71.7
TPR.G4382 Trifolium pratense HOM05D005227 ORTHO05D006379 1.1e-33 146.7 102 71.6
Potri.003G155000 Populus trichocarpa HOM05D005227 ORTHO05D006379 1.5e-33 146.4 99 74.7
Rhsim13G0134700 Rhododendron simsii HOM05D005227 ORTHO05D006379 1.5e-33 146.4 98 74.5
RhsimUnG0177600 Rhododendron simsii HOM05D005227 ORTHO05D006379 1.5e-33 146.4 98 74.5
A09p21240 Brassica napus HOM05D005227 ORTHO05D006379 2.0e-33 146.0 102 69.6
BraA09t37729Z Brassica rapa HOM05D005227 ORTHO05D006379 2.0e-33 146.0 102 69.6
TPR.G1285 Trifolium pratense HOM05D005227 ORTHO05D006379 2.0e-33 146.0 102 70.6
Medtr8g031320 Medicago truncatula HOM05D005227 ORTHO05D006379 2.6e-33 145.6 102 71.6
PSO832G3358 Papaver somniferum HOM05D005227 ORTHO05D006379 3.3e-33 145.2 98 74.5
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 3.3e-33 145.2 99 73.7
CDE05G2352 Ceratophyllum demersum HOM05D005227 ORTHO05D006379 4.4e-33 144.8 96 72.9
Ciclev10010372m.g Citrus clementina HOM05D005227 ORTHO05D006379 9.7e-33 143.7 99 72.7
PSO198G0154 Papaver somniferum HOM05D005227 ORTHO05D006379 9.7e-33 143.7 98 73.5
PSO541G1361 Papaver somniferum HOM05D005227 ORTHO05D006379 1.7e-32 142.9 98 73.5
Os05g0148300 Oryza sativa ssp. japonica HOM05D005227 ORTHO05D006379 2.8e-32 142.1 99 68.7
Zm00001eb354280 Zea mays HOM05D005227 ORTHO05D006379 2.8e-32 142.1 99 68.7
PSO541G0222 Papaver somniferum HOM05D005227 ORTHO05D006379 1.4e-31 139.8 98 71.4
PSO675G1867 Papaver somniferum HOM05D005227 ORTHO05D006379 1.4e-31 139.8 98 71.4
Dinv26329 Davidia involucrata HOM05D005227 ORTHO05D006379 3.6e-27 125.2 74 79.7
CSS0030749 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 1.4e-26 123.2 121 58.7
CSS0027348 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 2.3e-26 122.5 121 58.7
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 2.6e-25 119.0 78 67.9
Ah.06g187780 Amaranthus hybridus HOM05D005227 ORTHO05D006379 1.7e-24 116.3 156 42.9
AUR62040506 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.6e-22 109.8 69 69.6
arahy.Tifrunner.gnm1.ann1.RE1YA1 Arachis hypogaea HOM05D005227 ORTHO05D006379 1.7e-21 106.3 72 70.8
VMungo0859G0001 Vigna mungo HOM05D005227 ORTHO05D006379 2.2e-21 105.9 69 73.9
FAN25G2025 Fragaria x ananassa HOM05D005227 ORTHO05D006379 3.8e-21 105.1 85 63.5
Psat4g202600 Pisum sativum HOM05D005227 ORTHO05D006379 5.0e-21 104.8 73 68.5
CDE02G3990 Ceratophyllum demersum HOM05D001323 ORTHO05D001223 6.5e-21 104.4 69 69.6
Psat0s277g0080 Pisum sativum HOM05D005227 ORTHO05D006379 6.5e-21 104.4 73 67.1
Ca_23647_v3 Cicer arietinum L. HOM05D005227 ORTHO05D006379 2.5e-20 102.4 73 67.1
Pp3c15_4210 Physcomitrium patens HOM05D005227 ORTHO05D006379 1.6e-19 99.8 88 58.0
AUR62035552 Chenopodium quinoa HOM05D005227 ORTHO05D006379 6.1e-19 97.8 83 54.2
AagrBONN_evm.TU.Sc2ySwM_228.4328 Anthoceros agrestis HOM05D005227 ORTHO05D006379 3.0e-18 95.5 88 54.5
BcaC04g21823 Brassica carinata HOM05D005227 ORTHO05D006379 3.4e-17 92.0 102 52.9
C02p45310 Brassica napus HOM05D005227 ORTHO05D006379 5.7e-17 91.3 61 68.9
Ciclev10006880m.g Citrus clementina HOM05D005227 ORTHO05D006379 7.7e-14 80.9 97 51.5
Mapoly0090s0044 Marchantia polymorpha HOM05D005227 ORTHO05D006379 5.0e-13 78.2 83 48.2
Lsat_1_v5_gn_4_103780 Lactuca sativa HOM05D005227 ORTHO05D006379 1.1e-12 77.0 76 47.4
HPP92_027864 Vanilla planifolia HOM05D005227 ORTHO05D006379 1.1e-12 77.0 54 66.7
C09p27040 Brassica napus HOM05D005227 ORTHO05D006379 2.0e-09 66.2 74 48.6
MCO07G459 Micromonas commoda HOM05D005227 ORTHO05D006379 2.8e-08 62.4 85 48.2
Cfa022274 Carpinus fangiana HOM05D005227 ORTHO05D006379 3.1e-07 58.9 101 35.6


User provided reference genes

Program Settings