Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g04240 Coffea canephora HOM05D003442 ORTHO05D004005 2.0e-71 272.3 137 100.0
Nitab4.5_0003759g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 1.7e-54 216.1 125 85.6
PGSC0003DMG401011206 Solanum tuberosum HOM05D003442 ORTHO05D004005 1.2e-52 209.9 113 90.3
Solyc07g005940.4 Solanum lycopersicum HOM05D003442 ORTHO05D004005 2.1e-52 209.1 113 90.3
Sopen07g002070 Solanum pennellii HOM05D003442 ORTHO05D004005 2.1e-52 209.1 113 90.3
Thecc.05G221300 Theobroma cacao HOM05D003442 ORTHO05D004005 3.5e-52 208.4 111 90.1
CAN.G1610.2 Capsicum annuum HOM05D003442 ORTHO05D004005 7.9e-52 207.2 113 89.4
AUR62006614 Chenopodium quinoa HOM05D003442 ORTHO05D004005 1.0e-51 206.8 114 88.6
Ciclev10031531m.g Citrus clementina HOM05D003442 ORTHO05D004005 1.3e-51 206.5 110 90.0
SalBow1G2470 Salvia bowleyana HOM05D003442 ORTHO05D004005 1.8e-51 206.1 114 86.8
SalBow1G3122 Salvia bowleyana HOM05D003442 ORTHO05D004005 1.8e-51 206.1 114 86.8
AUR62000266 Chenopodium quinoa HOM05D003442 ORTHO05D004005 2.3e-51 205.7 114 87.7
Cpa.g.sc43.106 Carica papaya HOM05D003442 ORTHO05D004005 3.0e-51 205.3 111 87.4
CiPaw.05G214600 Carya illinoinensis HOM05D003442 ORTHO05D004005 3.0e-51 205.3 112 88.4
SalBow3G0476 Salvia bowleyana HOM05D003442 ORTHO05D004005 3.0e-51 205.3 120 85.8
Peaxi162Scf00062g00013 Petunia axillaris HOM05D003442 ORTHO05D004005 5.1e-51 204.5 113 86.7
Hund07385 Selenicereus undatus HOM05D003442 ORTHO05D004005 6.7e-51 204.1 112 88.4
TWI60G0615 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 6.7e-51 204.1 111 89.2
Nn7g37514 Nelumbo nucifera HOM05D003442 ORTHO05D004005 8.7e-51 203.8 111 88.3
CsaV3_3G040000 Cucumis sativus L. HOM05D003442 ORTHO05D004005 1.1e-50 203.4 113 87.6
Migut.F02084 Erythranthe guttata HOM05D003442 ORTHO05D004005 1.1e-50 203.4 116 85.3
Duzib177G0664 Durio zibethinus HOM05D003442 ORTHO05D004005 3.3e-50 201.8 111 87.4
vmacro12087 Vaccinium macrocarpon HOM05D003442 ORTHO05D004005 3.3e-50 201.8 113 86.7
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 4.3e-50 201.4 111 88.3
PGR142G0137 Punica granatum HOM05D003442 ORTHO05D004005 4.3e-50 201.4 111 88.3
TAR636G2465 Trochodendron aralioides HOM05D003442 ORTHO05D004005 4.3e-50 201.4 110 88.2
ClCG10G016340 Citrullus lanatus HOM05D003442 ORTHO05D004005 5.7e-50 201.1 113 86.7
QL09p021203 Quercus lobata HOM05D003442 ORTHO05D004005 7.4e-50 200.7 114 84.2
TWI32G0704 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 7.4e-50 200.7 114 86.8
EL10Ac4g10031 Beta vulgaris HOM05D003442 ORTHO05D004005 9.7e-50 200.3 112 85.7
CSS0045568 Camellia sinensis var. sinensis HOM05D003442 ORTHO05D004005 9.7e-50 200.3 111 84.7
Gohir.A08G221656 Gossypium hirsutum HOM05D003442 ORTHO05D004005 1.3e-49 199.9 111 86.5
MELO3C009742.2 Cucumis melo HOM05D003442 ORTHO05D004005 1.6e-49 199.5 113 85.8
Gohir.D03G053800 Gossypium hirsutum HOM05D003442 ORTHO05D004005 1.6e-49 199.5 111 86.5
MD01G1238500 Malus domestica HOM05D003442 ORTHO05D004005 1.6e-49 199.5 111 85.6
MBI07_g36707_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 2.2e-49 199.1 110 89.1
MBI07_g38305_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 2.2e-49 199.1 110 89.1
Eucgr.H02340 Eucalyptus grandis HOM05D003442 ORTHO05D004005 2.8e-49 198.7 110 87.3
Rhsim09G0020400 Rhododendron simsii HOM05D003442 ORTHO05D004005 2.8e-49 198.7 111 86.5
CANSAT21G2378 Cannabis sativa HOM05D003442 ORTHO05D004005 4.8e-49 198.0 113 84.1
Migut.F01837 Erythranthe guttata HOM05D003442 ORTHO05D004005 4.8e-49 198.0 113 85.8
Sopen12g004770 Solanum pennellii HOM05D003442 ORTHO05D004005 6.3e-49 197.6 113 84.1
Actinidia31263 Actinidia chinensis HOM05D003442 ORTHO05D004005 8.2e-49 197.2 113 85.8
Manes.08G064200 Manihot esculenta HOM05D003442 ORTHO05D004005 8.2e-49 197.2 113 83.2
Atru.chr12.1913 Acer truncatum HOM05D003442 ORTHO05D004005 1.1e-48 196.8 110 84.5
MD07G1310400 Malus domestica HOM05D003442 ORTHO05D004005 1.1e-48 196.8 111 84.7
Rhsim05G0022700 Rhododendron simsii HOM05D003442 ORTHO05D004005 1.1e-48 196.8 110 86.4
Sed0022579 Sechium edule HOM05D003442 ORTHO05D004005 1.1e-48 196.8 113 85.0
PGSC0003DMG400007911 Solanum tuberosum HOM05D003442 ORTHO05D004005 1.4e-48 196.4 113 83.2
Solyc12g009890.3 Solanum lycopersicum HOM05D003442 ORTHO05D004005 1.8e-48 196.1 113 83.2
Gorai.003G056300 Gossypium raimondii HOM05D003442 ORTHO05D004005 2.4e-48 195.7 110 85.5
Manes.09G128600 Manihot esculenta HOM05D003442 ORTHO05D004005 2.4e-48 195.7 111 83.8
FvH4_7g34170 Fragaria vesca HOM05D003442 ORTHO05D004005 3.1e-48 195.3 111 83.8
Sed0014541 Sechium edule HOM05D003442 ORTHO05D004005 3.1e-48 195.3 113 83.2
SGA_v2.0_scaffold340G49317 Striga asiatica HOM05D003442 ORTHO05D004005 3.1e-48 195.3 129 77.5
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 4.1e-48 194.9 111 82.9
Gohir.D08G241000 Gossypium hirsutum HOM05D003442 ORTHO05D004005 4.1e-48 194.9 111 84.7
RcHm_v2.0_Chr1g0384521 Rosa chinensis HOM05D003442 ORTHO05D004005 4.1e-48 194.9 111 82.9
Nitab4.5_0002329g0200 Nicotiana tabacum HOM05D003442 ORTHO05D004005 6.9e-48 194.1 113 84.1
Potri.013G078700 Populus trichocarpa HOM05D003442 ORTHO05D004005 6.9e-48 194.1 111 83.8
GSVIVG01024344001 Vitis vinifera HOM05D003442 ORTHO05D004005 6.9e-48 194.1 110 85.5
FAN03G3412 Fragaria x ananassa HOM05D003442 ORTHO05D004005 9.0e-48 193.7 111 82.0
Actinidia07920 Actinidia chinensis HOM05D003442 ORTHO05D004005 1.2e-47 193.4 113 85.0
PSO017G5499 Papaver somniferum HOM05D003442 ORTHO05D004005 2.0e-47 192.6 111 84.7
PSO675G6803 Papaver somniferum HOM05D003442 ORTHO05D004005 2.0e-47 192.6 111 84.7
Prupe.2G328400 Prunus persica HOM05D003442 ORTHO05D004005 2.0e-47 192.6 111 82.0
arahy.Tifrunner.gnm1.ann1.T9GKNP Arachis hypogaea HOM05D003442 ORTHO05D004005 2.6e-47 192.2 110 81.8
Nitab4.5_0008310g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 2.6e-47 192.2 124 76.6
FAN08G1651 Fragaria x ananassa HOM05D003442 ORTHO05D004005 3.4e-47 191.8 111 81.1
THA.LOC104804387 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 4.5e-47 191.4 111 83.8
Glyma.16G142600 Glycine max HOM05D003442 ORTHO05D004005 5.9e-47 191.0 111 82.0
Gorai.004G256400 Gossypium raimondii HOM05D003442 ORTHO05D004005 5.9e-47 191.0 127 75.6
ATR0743G255 Amborella trichopoda HOM05D003442 ORTHO05D004005 1.0e-46 190.3 114 82.5
Sabra13G0073800 Salix brachista HOM05D003442 ORTHO05D004005 1.0e-46 190.3 110 83.6
FAN18G0534 Fragaria x ananassa HOM05D003442 ORTHO05D004005 1.3e-46 189.9 111 80.2
THA.LOC104819563 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 2.9e-46 188.7 111 82.0
A01p04260 Brassica napus HOM05D003442 ORTHO05D004005 5.0e-46 188.0 114 80.7
BraA01t00415Z Brassica rapa HOM05D003442 ORTHO05D004005 5.0e-46 188.0 114 80.7
Ca_22246_v3 Cicer arietinum L. HOM05D003442 ORTHO05D004005 5.0e-46 188.0 112 79.5
Glyma.02G059800 Glycine max HOM05D003442 ORTHO05D004005 6.5e-46 187.6 111 81.1
Lalb_Chr05g0227421 Lupinus albus HOM05D003442 ORTHO05D004005 8.5e-46 187.2 111 77.5
Potri.019G047800 Populus trichocarpa HOM05D003442 ORTHO05D004005 8.5e-46 187.2 111 81.1
BcaNung03800 Brassica carinata HOM05D003442 ORTHO05D004005 1.1e-45 186.8 114 79.8
BolC1t00448H Brassica oleracea HOM05D003442 ORTHO05D004005 1.1e-45 186.8 114 79.8
Thhalv10025183m.g Eutrema salsugineum HOM05D003442 ORTHO05D004005 1.1e-45 186.8 114 80.7
Lj2g0002798 Lotus japonicus HOM05D003442 ORTHO05D004005 1.4e-45 186.4 111 81.1
Psat4g090720 Pisum sativum HOM05D003442 ORTHO05D004005 1.4e-45 186.4 110 80.0
Lsat_1_v5_gn_6_25940 Lactuca sativa HOM05D003442 ORTHO05D004005 2.5e-45 185.7 113 80.5
Medtr8g078370 Medicago truncatula HOM05D003442 ORTHO05D004005 2.5e-45 185.7 127 70.9
Phvul.003G250866 Phaseolus vulgaris HOM05D003442 ORTHO05D004005 3.2e-45 185.3 110 80.0
TAR365G0520 Trochodendron aralioides HOM05D003442 ORTHO05D004005 3.2e-45 185.3 106 84.0
CARHR242670 Cardamine hirsuta HOM05D003442 ORTHO05D004005 4.2e-45 184.9 111 80.2
VMungo0251G0407 Vigna mungo HOM05D003442 ORTHO05D004005 7.2e-45 184.1 110 80.0
AL5G22780 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 9.4e-45 183.7 111 81.1
MSTRG.8187 Avicennia marina HOM05D003442 ORTHO05D004005 9.4e-45 183.7 111 82.0
FAN01G2089 Fragaria x ananassa HOM05D003442 ORTHO05D004005 9.4e-45 183.7 122 75.4
SEGI_25036 Sequoiadendron giganteum HOM05D003442 ORTHO05D004005 1.2e-44 183.3 114 78.9
Lalb_Chr09g0333641 Lupinus albus HOM05D003442 ORTHO05D004005 1.6e-44 183.0 112 75.9
unitig_61.g26274 Utricularia gibba HOM05D003442 ORTHO05D004005 1.6e-44 183.0 106 84.9
PGR042G1782 Punica granatum HOM05D003442 ORTHO05D004005 2.7e-44 182.2 111 80.2
Sp7g31930 Schrenkiella parvula HOM05D003442 ORTHO05D004005 3.6e-44 181.8 114 78.9
Aqoxy6G03064 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 7.9e-44 180.6 107 81.3
AL7G17200 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 7.9e-44 180.6 111 78.4
AT3G42050 Arabidopsis thaliana HOM05D003442 ORTHO05D004005 7.9e-44 180.6 111 78.4
BcaC01g00920 Brassica carinata HOM05D003442 ORTHO05D004005 1.0e-43 180.3 114 78.1
Lj4g0025932 Lotus japonicus HOM05D003442 ORTHO05D004005 1.4e-43 179.9 107 78.5
Sc16g0010680 Simmondsia chinensis HOM05D003442 ORTHO05D004005 1.4e-43 179.9 101 86.1
Ah.04g159350 Amaranthus hybridus HOM05D003442 ORTHO05D004005 1.8e-43 179.5 105 81.9
A03p62660 Brassica napus HOM05D003442 ORTHO05D004005 2.3e-43 179.1 114 76.3
C07p60210 Brassica napus HOM05D003442 ORTHO05D004005 2.3e-43 179.1 114 76.3
BolC7t46462H Brassica oleracea HOM05D003442 ORTHO05D004005 2.3e-43 179.1 114 76.3
BraA03t15336Z Brassica rapa HOM05D003442 ORTHO05D004005 2.3e-43 179.1 114 76.3
DCAR_023762 Daucus carota HOM05D003442 ORTHO05D004005 2.3e-43 179.1 113 76.1
HPP92_007347 Vanilla planifolia HOM05D003442 ORTHO05D004005 2.3e-43 179.1 115 76.5
BcaB03g11847 Brassica carinata HOM05D003442 ORTHO05D004005 3.0e-43 178.7 114 76.3
Carub.0007s0621 Capsella rubella HOM05D003442 ORTHO05D004005 3.0e-43 178.7 111 77.5
BraA08t33665Z Brassica rapa HOM05D003442 ORTHO05D004005 6.7e-43 177.6 111 76.6
HanXRQChr13g0401211 Helianthus annuus HOM05D003442 ORTHO05D004005 8.8e-43 177.2 113 75.2
ECA233G0769 Erigeron canadensis HOM05D003442 ORTHO05D004005 1.1e-42 176.8 111 78.4
A08p17030 Brassica napus HOM05D003442 ORTHO05D004005 2.0e-42 176.0 111 75.7
Lj2C606G3 Lonicera japonica HOM05D003442 ORTHO05D004005 2.0e-42 176.0 103 81.6
BcaNung03365 Brassica carinata HOM05D003442 ORTHO05D004005 2.5e-42 175.6 114 75.4
Aa31LG2G16640 Aethionema arabicum HOM05D003442 ORTHO05D004005 7.4e-42 174.1 114 74.6
C01p04650 Brassica napus HOM05D003442 ORTHO05D004005 9.7e-42 173.7 105 80.0
Peaxi162Scf01313g00235 Petunia axillaris HOM05D003442 ORTHO05D004005 1.3e-41 173.3 102 84.3
Zm00001eb323620 Zea mays HOM05D003442 ORTHO05D004005 6.3e-41 171.0 111 75.7
DCAR_002085 Daucus carota HOM05D003442 ORTHO05D004005 8.2e-41 170.6 147 60.5
Os07g0549700 Oryza sativa ssp. japonica HOM05D003442 ORTHO05D004005 1.8e-40 169.5 110 73.6
Zm00001eb106630 Zea mays HOM05D003442 ORTHO05D004005 6.9e-40 167.5 111 73.9
C03p85940 Brassica napus HOM05D003442 ORTHO05D004005 2.6e-39 165.6 116 74.1
SGA_v2.0_scaffold122G33217 Striga asiatica HOM05D003442 ORTHO05D004005 4.5e-39 164.9 90 88.9
Dinv17142 Davidia involucrata HOM05D003442 ORTHO05D004005 7.7e-39 164.1 90 87.8
Duzib106G0604 Durio zibethinus HOM05D003442 ORTHO05D004005 1.3e-38 163.3 90 88.9
Gohir.A02G127200 Gossypium hirsutum HOM05D003442 ORTHO05D004005 2.9e-38 162.2 90 87.8
Mapoly0102s0002 Marchantia polymorpha HOM05D003442 ORTHO05D004005 5.0e-38 161.4 110 70.0
Lj4A843G12 Lonicera japonica HOM05D003442 ORTHO05D004005 8.5e-38 160.6 135 63.0
CDE04G1479 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 2.5e-37 159.1 100 77.0
arahy.Tifrunner.gnm1.ann1.CZ7R53 Arachis hypogaea HOM05D003442 ORTHO05D004005 3.2e-37 158.7 94 79.8
Aqoxy2G01953 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 4.2e-37 158.3 98 77.6
Pp3c1_26980 Physcomitrium patens HOM05D003442 ORTHO05D004005 1.2e-36 156.8 111 68.5
Haze_00382 Corylus avellana HOM05D003442 ORTHO05D004005 1.6e-36 156.4 88 86.4
COL.COLO4_15183 Corchorus olitorius HOM05D003442 ORTHO05D004005 4.7e-36 154.8 86 87.2
PSO675G6576 Papaver somniferum HOM05D003442 ORTHO05D004005 6.1e-36 154.5 122 63.9
CDE02G3771 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 1.0e-35 153.7 94 78.7
Oeu007683.1 Olea europaea HOM05D003442 ORTHO05D004005 2.3e-35 152.5 120 70.0
Hund21933 Selenicereus undatus HOM05D003442 ORTHO05D004005 3.9e-35 151.8 88 83.0
AagrBONN_evm.TU.Sc2ySwM_344.2700 Anthoceros agrestis HOM05D003442 ORTHO05D004005 1.1e-34 150.2 108 64.8
Pp3c10_2890 Physcomitrium patens HOM05D003442 ORTHO05D004005 2.6e-34 149.1 118 64.4
arahy.Tifrunner.gnm1.ann1.K5ZCN3 Arachis hypogaea HOM05D003442 ORTHO05D004005 5.7e-34 147.9 94 74.5
CANSAT56G1635 Cannabis sativa HOM05D003442 ORTHO05D004005 6.3e-33 144.4 107 67.3
CANSAT35G0024 Cannabis sativa HOM05D003442 ORTHO05D004005 5.3e-32 141.4 107 66.4
AL5G22860 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 4.5e-31 138.3 85 80.0
Nitab4.5_0006810g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 1.3e-30 136.7 79 83.5
FvH4_5g39390 Fragaria vesca HOM05D003442 ORTHO05D004005 4.7e-28 128.3 74 81.1
SMO361G0576 Selaginella moellendorffii HOM05D003442 ORTHO05D004005 3.0e-27 125.6 107 56.1
Sc09g0001320 Simmondsia chinensis HOM05D003442 ORTHO05D004005 1.3e-22 110.2 75 70.7
Cre01.g027800 Chlamydomonas reinhardtii HOM05D003442 ORTHO05D004005 2.2e-22 109.4 93 50.5
ATR0794G079 Amborella trichopoda HOM05D003442 ORTHO05D004005 2.8e-17 92.4 55 76.4
SHI02591 Sapria himalayana HOM05D003442 ORTHO05D004005 1.1e-16 90.5 52 80.8
PRCOL_00001521 Prasinoderma coloniale HOM05D003442 ORTHO05D004005 4.1e-16 88.6 116 39.7
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 9.1e-16 87.4 48 89.6
SHI02590 Sapria himalayana HOM05D003442 ORTHO05D004005 1.2e-15 87.0 52 80.8
AagrBONN_evm.TU.Sc2ySwM_368.2763 Anthoceros agrestis HOM05D003442 ORTHO05D004005 1.9e-13 79.7 96 45.8
Pp3c2_19490 Physcomitrium patens HOM05D003442 ORTHO05D004005 1.9e-13 79.7 59 64.4
MCO09G349 Micromonas commoda HOM05D003442 ORTHO05D004005 2.6e-10 69.3 95 34.7
CBR_g3526 Chara braunii HOM05D003442 ORTHO05D004005 6.3e-09 64.7 82 42.7


User provided reference genes

Program Settings