Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g04230 Coffea canephora HOM05D003442 ORTHO05D004005 5.9e-211 737.3 371 100.0
Manes.09G128600 Manihot esculenta HOM05D003442 ORTHO05D004005 6.6e-178 627.5 344 88.4
Prupe.2G328400 Prunus persica HOM05D003442 ORTHO05D004005 9.6e-177 623.6 344 88.4
MD07G1310400 Malus domestica HOM05D003442 ORTHO05D004005 1.6e-176 622.9 344 89.0
MD01G1238500 Malus domestica HOM05D003442 ORTHO05D004005 5.3e-175 617.8 344 88.1
Haze_00382 Corylus avellana HOM05D003442 ORTHO05D004005 6.9e-175 617.5 343 88.6
Thecc.05G221300 Theobroma cacao HOM05D003442 ORTHO05D004005 9.0e-175 617.1 344 87.8
Duzib177G0664 Durio zibethinus HOM05D003442 ORTHO05D004005 2.6e-174 615.5 344 87.5
Dinv17142 Davidia involucrata HOM05D003442 ORTHO05D004005 4.4e-174 614.8 344 88.4
Nn7g37514 Nelumbo nucifera HOM05D003442 ORTHO05D004005 1.7e-173 612.8 344 87.8
FAN03G3412 Fragaria x ananassa HOM05D003442 ORTHO05D004005 2.2e-173 612.5 344 88.4
FvH4_7g34170 Fragaria vesca HOM05D003442 ORTHO05D004005 4.9e-173 611.3 344 88.1
FAN01G2089 Fragaria x ananassa HOM05D003442 ORTHO05D004005 4.9e-173 611.3 344 88.1
Potri.013G078700 Populus trichocarpa HOM05D003442 ORTHO05D004005 6.4e-173 610.9 356 85.7
RcHm_v2.0_Chr1g0384521 Rosa chinensis HOM05D003442 ORTHO05D004005 1.1e-172 610.1 344 88.1
TWI60G0615 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 1.9e-172 609.4 344 86.0
Actinidia31263 Actinidia chinensis HOM05D003442 ORTHO05D004005 7.1e-172 607.4 344 87.8
QL09p021203 Quercus lobata HOM05D003442 ORTHO05D004005 1.2e-171 606.7 341 87.4
Gorai.003G056300 Gossypium raimondii HOM05D003442 ORTHO05D004005 3.5e-171 605.1 342 86.5
GSVIVG01024344001 Vitis vinifera HOM05D003442 ORTHO05D004005 4.6e-171 604.7 357 83.8
Migut.F01837 Erythranthe guttata HOM05D003442 ORTHO05D004005 7.9e-171 604.0 344 86.9
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 1.3e-170 603.2 343 87.2
Gohir.D03G053800 Gossypium hirsutum HOM05D003442 ORTHO05D004005 2.3e-170 602.4 344 85.8
Duzib106G0604 Durio zibethinus HOM05D003442 ORTHO05D004005 3.0e-170 602.1 344 85.5
Cpa.g.sc43.106 Carica papaya HOM05D003442 ORTHO05D004005 3.9e-170 601.7 344 84.9
Potri.019G047800 Populus trichocarpa HOM05D003442 ORTHO05D004005 6.6e-170 600.9 344 85.5
vmacro12087 Vaccinium macrocarpon HOM05D003442 ORTHO05D004005 6.6e-170 600.9 344 86.3
TWI32G0704 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 8.7e-170 600.5 344 84.9
TAR636G2465 Trochodendron aralioides HOM05D003442 ORTHO05D004005 8.7e-170 600.5 337 87.8
Manes.08G064200 Manihot esculenta HOM05D003442 ORTHO05D004005 1.1e-169 600.1 344 85.5
VMungo0251G1146 Vigna mungo HOM05D003442 ORTHO05D004005 1.5e-169 599.7 342 85.4
Rhsim05G0022700 Rhododendron simsii HOM05D003442 ORTHO05D004005 1.9e-169 599.4 342 86.5
Lj4A843G12 Lonicera japonica HOM05D003442 ORTHO05D004005 4.3e-169 598.2 344 86.6
CsaV3_3G040000 Cucumis sativus L. HOM05D003442 ORTHO05D004005 3.6e-168 595.1 344 84.9
Peaxi162Scf01313g00235 Petunia axillaris HOM05D003442 ORTHO05D004005 3.6e-168 595.1 343 85.7
Gohir.A08G221656 Gossypium hirsutum HOM05D003442 ORTHO05D004005 6.2e-168 594.3 344 84.9
Lalb_Chr09g0333641 Lupinus albus HOM05D003442 ORTHO05D004005 6.2e-168 594.3 342 84.5
Gorai.004G256400 Gossypium raimondii HOM05D003442 ORTHO05D004005 1.1e-167 593.6 342 85.1
MELO3C009742.2 Cucumis melo HOM05D003442 ORTHO05D004005 1.4e-167 593.2 344 84.9
Aqoxy2G01953 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 1.8e-167 592.8 347 83.9
Atru.chr12.1913 Acer truncatum HOM05D003442 ORTHO05D004005 2.4e-167 592.4 337 85.5
MSTRG.8187 Avicennia marina HOM05D003442 ORTHO05D004005 4.0e-167 591.7 344 84.3
Gohir.D08G241000 Gossypium hirsutum HOM05D003442 ORTHO05D004005 4.0e-167 591.7 344 84.6
PSO675G6803 Papaver somniferum HOM05D003442 ORTHO05D004005 5.3e-167 591.3 341 85.3
HanXRQChr13g0401211 Helianthus annuus HOM05D003442 ORTHO05D004005 6.9e-167 590.9 344 84.6
ATR0743G255 Amborella trichopoda HOM05D003442 ORTHO05D004005 1.2e-166 590.1 344 84.6
CSS0045568 Camellia sinensis var. sinensis HOM05D003442 ORTHO05D004005 1.5e-166 589.7 344 85.2
Lsat_1_v5_gn_6_25940 Lactuca sativa HOM05D003442 ORTHO05D004005 1.5e-166 589.7 344 84.6
Glyma.16G142600 Glycine max HOM05D003442 ORTHO05D004005 2.6e-166 589.0 344 84.3
Gohir.A02G127200 Gossypium hirsutum HOM05D003442 ORTHO05D004005 2.6e-166 589.0 342 84.5
Sc09g0001320 Simmondsia chinensis HOM05D003442 ORTHO05D004005 2.6e-166 589.0 342 83.6
Sc16g0010680 Simmondsia chinensis HOM05D003442 ORTHO05D004005 2.6e-166 589.0 342 83.3
PGSC0003DMG401011206 Solanum tuberosum HOM05D003442 ORTHO05D004005 3.4e-166 588.6 344 84.3
Ciclev10031531m.g Citrus clementina HOM05D003442 ORTHO05D004005 4.5e-166 588.2 337 86.1
Sed0022579 Sechium edule HOM05D003442 ORTHO05D004005 4.5e-166 588.2 344 83.7
CAN.G1610.2 Capsicum annuum HOM05D003442 ORTHO05D004005 5.8e-166 587.8 344 84.6
Glyma.02G059800 Glycine max HOM05D003442 ORTHO05D004005 1.3e-165 586.6 344 83.7
Medtr8g078370 Medicago truncatula HOM05D003442 ORTHO05D004005 1.3e-165 586.6 344 83.7
SGA_v2.0_scaffold122G33217 Striga asiatica HOM05D003442 ORTHO05D004005 1.7e-165 586.3 344 84.0
PSO017G5499 Papaver somniferum HOM05D003442 ORTHO05D004005 2.9e-165 585.5 341 85.0
Sed0014541 Sechium edule HOM05D003442 ORTHO05D004005 2.9e-165 585.5 344 83.4
CANSAT21G2378 Cannabis sativa HOM05D003442 ORTHO05D004005 3.8e-165 585.1 344 84.0
CiPaw.05G214600 Carya illinoinensis HOM05D003442 ORTHO05D004005 3.8e-165 585.1 344 82.6
Nitab4.5_0002329g0200 Nicotiana tabacum HOM05D003442 ORTHO05D004005 4.9e-165 584.7 344 83.1
PGR142G0137 Punica granatum HOM05D003442 ORTHO05D004005 1.9e-164 582.8 344 83.4
Psat4g090760 Pisum sativum HOM05D003442 ORTHO05D004005 5.5e-164 581.3 342 83.0
AL5G22780 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 9.3e-164 580.5 344 82.0
COL.COLO4_15183 Corchorus olitorius HOM05D003442 ORTHO05D004005 1.2e-163 580.1 342 84.8
ECA233G0769 Erigeron canadensis HOM05D003442 ORTHO05D004005 1.2e-163 580.1 344 84.3
Migut.F02084 Erythranthe guttata HOM05D003442 ORTHO05D004005 1.2e-163 580.1 344 83.4
Sopen07g002070 Solanum pennellii HOM05D003442 ORTHO05D004005 1.2e-163 580.1 344 83.1
SalBow1G1076 Salvia bowleyana HOM05D003442 ORTHO05D004005 2.1e-163 579.3 342 83.6
SalBow1G3564 Salvia bowleyana HOM05D003442 ORTHO05D004005 2.1e-163 579.3 342 83.6
Carub.0007s0621 Capsella rubella HOM05D003442 ORTHO05D004005 3.5e-163 578.6 344 82.0
THA.LOC104819563 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 6.0e-163 577.8 344 82.0
Solyc07g005940.4 Solanum lycopersicum HOM05D003442 ORTHO05D004005 7.9e-163 577.4 344 82.8
Lj2C606G3 Lonicera japonica HOM05D003442 ORTHO05D004005 1.0e-162 577.0 344 83.4
Lj4g0025932 Lotus japonicus HOM05D003442 ORTHO05D004005 1.0e-162 577.0 342 83.0
Lj2g0002798 Lotus japonicus HOM05D003442 ORTHO05D004005 3.0e-162 575.5 337 84.3
Oeu007683.1 Olea europaea HOM05D003442 ORTHO05D004005 5.1e-162 574.7 339 84.7
Hund07385 Selenicereus undatus HOM05D003442 ORTHO05D004005 1.1e-161 573.5 352 79.8
A01p04260 Brassica napus HOM05D003442 ORTHO05D004005 3.3e-161 572.0 344 81.1
BraA01t00415Z Brassica rapa HOM05D003442 ORTHO05D004005 3.3e-161 572.0 344 81.1
A03p62660 Brassica napus HOM05D003442 ORTHO05D004005 4.3e-161 571.6 344 82.0
Lalb_Chr05g0227421 Lupinus albus HOM05D003442 ORTHO05D004005 4.3e-161 571.6 342 81.6
Sp7g31930 Schrenkiella parvula HOM05D003442 ORTHO05D004005 4.3e-161 571.6 344 82.0
C07p60210 Brassica napus HOM05D003442 ORTHO05D004005 9.6e-161 570.5 344 81.7
BolC7t46462H Brassica oleracea HOM05D003442 ORTHO05D004005 9.6e-161 570.5 344 81.7
BcaNung03800 Brassica carinata HOM05D003442 ORTHO05D004005 3.7e-160 568.5 344 80.8
C01p04650 Brassica napus HOM05D003442 ORTHO05D004005 3.7e-160 568.5 344 80.8
BolC1t00448H Brassica oleracea HOM05D003442 ORTHO05D004005 3.7e-160 568.5 344 80.8
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 4.8e-160 568.2 317 87.4
THA.LOC104804387 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 4.8e-160 568.2 344 81.4
arahy.Tifrunner.gnm1.ann1.CZ7R53 Arachis hypogaea HOM05D003442 ORTHO05D004005 1.4e-159 566.6 348 80.7
Thhalv10025183m.g Eutrema salsugineum HOM05D003442 ORTHO05D004005 1.4e-159 566.6 344 80.8
Eucgr.H02340 Eucalyptus grandis HOM05D003442 ORTHO05D004005 1.8e-159 566.2 337 83.4
Rhsim09G0020400 Rhododendron simsii HOM05D003442 ORTHO05D004005 2.4e-159 565.8 386 75.4
BraA03t15336Z Brassica rapa HOM05D003442 ORTHO05D004005 2.0e-158 562.8 365 77.5
Sopen12g004770 Solanum pennellii HOM05D003442 ORTHO05D004005 2.6e-158 562.4 344 81.1
DCAR_002085 Daucus carota HOM05D003442 ORTHO05D004005 4.5e-158 561.6 344 81.1
BcaB03g11847 Brassica carinata HOM05D003442 ORTHO05D004005 1.7e-157 559.7 344 80.2
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 1.7e-157 559.7 353 80.2
PGSC0003DMG400007911 Solanum tuberosum HOM05D003442 ORTHO05D004005 2.2e-157 559.3 344 80.8
HPP92_007347 Vanilla planifolia HOM05D003442 ORTHO05D004005 4.9e-157 558.1 341 80.1
PGR042G1782 Punica granatum HOM05D003442 ORTHO05D004005 3.2e-156 555.4 344 80.5
AT3G42050 Arabidopsis thaliana HOM05D003442 ORTHO05D004005 1.6e-155 553.1 344 79.1
Aqoxy6G03064 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 2.1e-155 552.7 320 84.4
unitig_61.g26274 Utricularia gibba HOM05D003442 ORTHO05D004005 4.6e-155 551.6 348 77.9
Zm00001eb323620 Zea mays HOM05D003442 ORTHO05D004005 6.0e-155 551.2 344 75.3
MBI07_g36707_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 1.8e-154 549.7 312 86.2
MBI07_g38305_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 2.3e-154 549.3 312 85.9
DCAR_023762 Daucus carota HOM05D003442 ORTHO05D004005 4.3e-153 545.0 369 74.3
Nitab4.5_0003759g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 1.4e-151 540.0 342 79.8
AUR62006614 Chenopodium quinoa HOM05D003442 ORTHO05D004005 2.0e-150 536.2 332 80.1
AUR62000266 Chenopodium quinoa HOM05D003442 ORTHO05D004005 1.7e-149 533.1 332 79.5
EL10Ac4g10031 Beta vulgaris HOM05D003442 ORTHO05D004005 8.4e-149 530.8 331 78.5
CDE02G3771 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 1.9e-148 529.6 337 76.9
Aa31LG2G16640 Aethionema arabicum HOM05D003442 ORTHO05D004005 3.2e-148 528.9 424 65.8
PSO675G6576 Papaver somniferum HOM05D003442 ORTHO05D004005 4.2e-148 528.5 341 75.7
arahy.Tifrunner.gnm1.ann1.K5ZCN3 Arachis hypogaea HOM05D003442 ORTHO05D004005 2.1e-147 526.2 320 82.2
ClCG10G016340 Citrullus lanatus HOM05D003442 ORTHO05D004005 7.9e-147 524.2 344 76.2
Nitab4.5_0006810g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 5.1e-146 521.5 338 77.8
SalBow3G0476 Salvia bowleyana HOM05D003442 ORTHO05D004005 4.3e-145 518.5 305 81.3
Hund21933 Selenicereus undatus HOM05D003442 ORTHO05D004005 1.5e-142 510.0 337 74.2
A08p17030 Brassica napus HOM05D003442 ORTHO05D004005 1.4e-140 503.4 344 73.8
BraA08t33665Z Brassica rapa HOM05D003442 ORTHO05D004005 1.4e-140 503.4 344 73.8
Ca_22246_v3 Cicer arietinum L. HOM05D003442 ORTHO05D004005 5.5e-140 501.5 280 87.9
TAR365G0691 Trochodendron aralioides HOM05D003442 ORTHO05D004005 3.6e-139 498.8 282 88.7
Oeu001224.1 Olea europaea HOM05D003442 ORTHO05D004005 6.1e-139 498.0 285 85.6
BcaNung03365 Brassica carinata HOM05D003442 ORTHO05D004005 6.7e-138 494.6 542 52.4
Peaxi162Scf00062g00013 Petunia axillaris HOM05D003442 ORTHO05D004005 2.2e-136 489.6 344 71.8
BcaC01g00920 Brassica carinata HOM05D003442 ORTHO05D004005 6.9e-135 484.6 344 72.1
C03p85940 Brassica napus HOM05D003442 ORTHO05D004005 2.6e-134 482.6 333 73.3
Ah.04g159350 Amaranthus hybridus HOM05D003442 ORTHO05D004005 1.4e-132 476.9 362 68.5
Nitab4.5_0008310g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 7.2e-132 474.6 344 70.1
SEGI_25036 Sequoiadendron giganteum HOM05D003442 ORTHO05D004005 9.4e-132 474.2 320 71.2
SMO361G0576 Selaginella moellendorffii HOM05D003442 ORTHO05D004005 2.9e-125 452.6 342 64.9
SGA_v2.0_scaffold340G49316 Striga asiatica HOM05D003442 ORTHO05D007315 1.4e-122 443.7 288 76.7
Pp3c1_26980 Physcomitrium patens HOM05D003442 ORTHO05D004005 1.1e-119 434.1 342 61.4
Pp3c10_2890 Physcomitrium patens HOM05D003442 ORTHO05D004005 1.0e-117 427.6 345 60.9
AagrBONN_evm.TU.Sc2ySwM_344.2700 Anthoceros agrestis HOM05D003442 ORTHO05D004005 1.3e-117 427.2 340 60.3
CANSAT35G0024 Cannabis sativa HOM05D003442 ORTHO05D004005 1.3e-117 427.2 342 64.9
CANSAT56G1635 Cannabis sativa HOM05D003442 ORTHO05D004005 5.5e-116 421.8 342 64.0
Mapoly0102s0002 Marchantia polymorpha HOM05D003442 ORTHO05D004005 1.0e-114 417.5 348 60.1
CARHR242660 Cardamine hirsuta HOM05D003442 ORTHO05D004005 2.7e-107 392.9 228 85.1
CANSAT35G0263 Cannabis sativa HOM05D003442 ORTHO05D004005 2.3e-106 389.8 311 63.7
Solyc12g009890.3 Solanum lycopersicum HOM05D003442 ORTHO05D004005 1.5e-105 387.1 243 78.2
AL7G17190 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 1.2e-91 340.9 200 84.5
CDE04G1479 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 3.5e-86 322.8 218 73.9
Phvul.003G250932 Phaseolus vulgaris HOM05D003442 ORTHO05D004005 1.7e-85 320.5 173 90.2
AagrBONN_evm.TU.Sc2ySwM_368.2763 Anthoceros agrestis HOM05D003442 ORTHO05D004005 3.0e-85 319.7 343 45.2
CDE02G0117 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 1.5e-84 317.4 253 67.2
MSTRG.344 Avicennia marina HOM05D003442 ORTHO05D004005 2.6e-81 306.6 164 92.1
arahy.Tifrunner.gnm1.ann1.I4HYIQ Arachis hypogaea HOM05D003442 ORTHO05D004005 9.8e-81 304.7 164 89.6
Ciclev10032936m.g Citrus clementina HOM05D003442 ORTHO05D004005 1.4e-79 300.8 164 88.4
SHI02588 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-72 277.7 230 64.3
Actinidia07921 Actinidia chinensis HOM05D003442 ORTHO05D004005 1.4e-71 274.2 146 92.5
CBR_g3526 Chara braunii HOM05D003442 ORTHO05D004005 4.1e-71 272.7 262 51.9
Cre01.g027800 Chlamydomonas reinhardtii HOM05D003442 ORTHO05D004005 1.2e-70 271.2 338 42.9
ATR0794G033 Amborella trichopoda HOM05D003442 ORTHO05D004005 1.5e-65 254.2 179 73.7
ATR0794G121 Amborella trichopoda HOM05D003442 ORTHO05D004005 1.3e-64 251.1 143 85.3
PRCOL_00001521 Prasinoderma coloniale HOM05D003442 ORTHO05D004005 8.7e-61 238.4 353 37.4
Oeu062031.1 Olea europaea HOM05D003442 ORTHO05D004005 7.3e-60 235.3 139 82.7
Actinidia07920 Actinidia chinensis HOM05D003442 ORTHO05D004005 1.4e-58 231.1 158 73.4
AL5G22860 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 7.1e-55 218.8 257 51.8
MCO09G349 Micromonas commoda HOM05D003442 ORTHO05D004005 9.3e-55 218.4 386 35.8
MD01G1238200 Malus domestica HOM05D003442 ORTHO05D004005 2.8e-51 206.8 205 57.6
CARHR242670 Cardamine hirsuta HOM05D003442 ORTHO05D004005 4.2e-47 193.0 118 75.4
Sed0024694 Sechium edule HOM05D003442 ORTHO05D004005 4.6e-46 189.5 159 67.3
CDE04G3472 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 5.1e-45 186.0 102 84.3
Lsat_1_v5_gn_2_1040 Lactuca sativa HOM05D003442 ORTHO05D004005 3.4e-41 173.3 141 67.4
Zm00001eb106630 Zea mays HOM05D003442 ORTHO05D004005 7.6e-41 172.2 119 64.7
Rhsim04G0133200 Rhododendron simsii HOM05D003442 ORTHO05D004005 6.5e-40 169.1 117 73.5
SHI02587 Sapria himalayana HOM05D003442 ORTHO05D004005 8.4e-40 168.7 131 64.1
vmacro00759 Vaccinium macrocarpon HOM05D003442 ORTHO05D004005 7.1e-39 165.6 90 87.8
Ciclev10033985m.g Citrus clementina HOM05D003442 ORTHO05D004005 1.4e-34 151.4 84 89.3
PGSC0003DMG402011206 Solanum tuberosum HOM05D003442 ORTHO05D004005 5.0e-32 142.9 84 84.5
AL7G17200 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 3.0e-21 107.1 121 47.1
Cfa024478 Carpinus fangiana HOM05D003442 ORTHO05D122614 6.3e-19 99.4 205 32.2
Pp3c2_19490 Physcomitrium patens HOM05D003442 ORTHO05D004005 1.3e-16 91.7 82 51.2
Nitab4.5_0009666g0010 Nicotiana tabacum HOM05D008541 ORTHO05D010458 1.7e-16 91.3 65 69.2
Rhsim04G0133100 Rhododendron simsii HOM05D003442 ORTHO05D339879 8.2e-11 72.4 117 43.6
FAN08G1651 Fragaria x ananassa HOM05D003442 ORTHO05D004005 3.2e-07 60.5 43 67.4
FAN18G0534 Fragaria x ananassa HOM05D003442 ORTHO05D004005 3.2e-07 60.5 43 67.4


User provided reference genes

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