Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 0.0e+00 1452.6 837 100.0
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 9.0e-215 751.1 852 59.5
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 4.0e-199 699.1 885 56.4
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 1.7e-197 693.7 836 57.8
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 2.2e-197 693.3 848 57.8
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 6.5e-197 691.8 852 57.0
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 4.6e-195 685.6 836 57.4
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 1.3e-194 684.1 847 55.5
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 1.8e-194 683.7 848 57.0
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 3.9e-194 682.6 833 55.8
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 1.9e-193 680.2 839 58.3
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 1.9e-193 680.2 833 55.7
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 9.7e-193 677.9 842 58.1
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 6.9e-191 671.8 885 52.0
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.9e-188 663.7 825 56.2
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 8.8e-186 654.8 865 51.3
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 1.5e-185 654.1 851 54.9
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 2.5e-185 653.3 840 55.2
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 3.4e-182 642.9 846 53.3
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 7.7e-182 641.7 849 53.1
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 2.5e-180 636.7 845 52.1
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 3.2e-180 636.3 847 52.1
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 1.5e-177 627.5 817 54.3
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 2.6e-177 626.7 833 52.9
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 2.6e-177 626.7 832 52.5
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 3.7e-176 622.9 919 48.1
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 1.1e-175 621.3 839 53.8
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 2.4e-175 620.2 857 53.4
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 5.3e-175 619.0 817 53.9
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 6.9e-175 618.6 822 53.6
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 1.2e-174 617.8 820 52.9
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 1.5e-174 617.5 832 53.8
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 2.2e-173 613.6 852 52.1
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 6.5e-173 612.1 845 50.7
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 1.1e-172 611.3 842 52.3
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 5.5e-172 609.0 826 52.5
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 2.7e-171 606.7 837 52.4
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 1.4e-170 604.4 836 53.7
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 1.8e-170 604.0 856 52.6
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 5.2e-170 602.4 842 52.1
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 5.2e-170 602.4 847 51.8
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 7.4e-169 598.6 841 51.0
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 1.7e-168 597.4 797 54.5
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 8.2e-168 595.1 846 52.4
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 1.4e-167 594.3 838 50.5
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 5.3e-167 592.4 841 48.8
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 9.1e-167 591.7 825 52.6
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 1.6e-166 590.9 814 47.2
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 2.0e-166 590.5 852 49.9
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 5.9e-166 589.0 848 52.7
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 8.5e-165 585.1 847 46.6
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 1.1e-164 584.7 842 51.7
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 2.7e-163 580.1 869 47.1
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 2.7e-163 580.1 819 48.0
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 4.7e-163 579.3 842 51.3
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 1.0e-162 578.2 839 51.3
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 8.8e-162 575.1 842 51.1
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 4.4e-161 572.8 838 49.8
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 2.2e-160 570.5 852 46.7
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 8.2e-160 568.5 845 46.3
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 1.1e-159 568.2 840 49.5
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 5.3e-159 565.8 827 48.4
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 7.0e-159 565.5 862 46.4
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 7.0e-159 565.5 791 53.4
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 1.2e-158 564.7 851 50.9
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 2.7e-158 563.5 830 46.9
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 3.5e-158 563.1 861 46.2
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 5.9e-158 562.4 880 46.2
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 1.0e-157 561.6 855 49.4
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 2.2e-157 560.5 861 44.8
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 2.2e-157 560.5 854 45.3
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 5.0e-157 559.3 832 51.2
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 5.0e-157 559.3 834 48.7
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 8.5e-157 558.5 819 47.4
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 3.2e-156 556.6 841 44.8
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 5.2e-154 549.3 856 50.6
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 5.2e-154 549.3 792 47.1
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 2.6e-153 547.0 839 49.3
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 7.5e-153 545.4 779 52.9
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.4e-151 541.2 707 54.2
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 1.8e-151 540.8 677 55.7
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 3.1e-151 540.0 812 47.8
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 9.1e-151 538.5 828 45.0
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 8.6e-149 531.9 840 48.8
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 6.1e-147 525.8 791 45.6
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 8.0e-147 525.4 821 49.9
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 2.0e-145 520.8 502 56.4
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 3.4e-145 520.0 749 54.2
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 4.4e-145 519.6 800 48.4
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 1.3e-144 518.1 821 48.6
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 2.8e-144 516.9 690 54.3
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 6.3e-144 515.8 820 50.6
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 7.8e-142 508.8 847 44.9
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 7.8e-142 508.8 978 45.6
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 3.3e-140 503.4 834 47.7
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 8.9e-138 495.4 816 47.7
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 2.4e-135 487.3 832 44.0
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 1.6e-134 484.6 832 43.9
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 6.6e-133 479.2 826 43.9
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 8.6e-133 478.8 826 43.9
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 2.8e-115 420.6 880 41.2
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 5.8e-113 412.9 877 40.0
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 2.4e-111 407.5 490 49.8
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 3.5e-110 403.7 894 39.5
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 3.0e-109 400.6 892 37.4
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 8.7e-101 372.5 765 44.3
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 5.8e-97 359.8 832 41.8
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 6.7e-93 346.3 854 35.1
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 1.3e-83 315.5 890 36.7
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 1.6e-78 298.5 614 47.6
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 6.1e-70 270.0 248 58.5
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 3.6e-62 244.2 500 38.2
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 4.7e-62 243.8 463 38.4
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 3.0e-61 241.1 323 45.2
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 9.7e-60 236.1 499 37.5
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 2.6e-57 228.0 589 32.4
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 3.0e-45 188.0 732 35.0
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 6.3e-43 180.3 842 29.5
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 6.3e-43 180.3 443 33.9
arahy.Tifrunner.gnm1.ann1.X0XBNQ Arachis hypogaea HOM05D005855 ORTHO05D006406 6.8e-37 160.2 184 51.6
Pp3c3_24970 Physcomitrium patens HOM05D005855 ORTHO05D006406 2.0e-33 148.7 386 34.5
Cpa.g.c37190 Carica papaya HOM05D005855 ORTHO05D006406 5.2e-29 134.0 195 43.6
GSVIVG01007186001 Vitis vinifera HOM05D005855 ORTHO05D006406 6.3e-27 127.1 116 56.0
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 1.0e-24 119.8 161 44.7
VMungo1383G0582 Vigna mungo HOM05D005855 ORTHO05D000818 1.9e-23 115.5 212 39.6
CBR_g39948 Chara braunii HOM05D005855 ORTHO05D006406 2.9e-19 101.7 191 42.9
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 1.3e-16 92.8 171 36.8
Nn8g40536 Nelumbo nucifera HOM05D005855 ORTHO05D006406 3.9e-16 91.3 72 56.9
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 3.3e-15 88.2 209 34.9
Lju114A5T28 Lonicera japonica HOM05D005855 ORTHO05D006406 1.2e-12 79.7 119 40.3
Zm00001eb367440 Zea mays HOM05D005855 ORTHO05D006406 1.2e-12 79.7 120 44.2
RcHm_v2.0_Chr5g0011851 Rosa chinensis HOM05D005855 ORTHO05D006406 6.0e-09 67.4 47 66.0
Lju1609C0T10 Lonicera japonica HOM05D005855 ORTHO05D006406 5.6e-07 60.8 66 53.0
Lju1034A2T22 Lonicera japonica HOM05D016202 ORTHO05D006406 4.7e-06 57.8 69 47.8
Lju1609C0G6 Lonicera japonica HOM05D016202 ORTHO05D006406 8.1e-06 57.0 64 51.6


User provided reference genes

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