Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g03910 Coffea canephora HOM05D005786 ORTHO05D006946 2.2e-171 605.5 305 100.0
Actinidia06794 Actinidia chinensis HOM05D005786 ORTHO05D006946 6.6e-107 391.3 303 67.7
Nn7g37593 Nelumbo nucifera HOM05D005786 ORTHO05D006946 1.2e-105 387.1 284 71.1
Thecc.05G189200 Theobroma cacao HOM05D005786 ORTHO05D006946 4.7e-105 385.2 300 66.7
Migut.F01861 Erythranthe guttata HOM05D005786 ORTHO05D006946 1.0e-104 384.0 297 69.0
GSVIVG01019061001 Vitis vinifera HOM05D005786 ORTHO05D006946 1.0e-104 384.0 295 67.8
Duzib235G1473 Durio zibethinus HOM05D005786 ORTHO05D006946 6.8e-104 381.3 298 66.1
Oeu034777.1 Olea europaea HOM05D005786 ORTHO05D006946 8.9e-104 380.9 298 67.4
Lj1A579T43 Lonicera japonica HOM05D005786 ORTHO05D006946 9.8e-103 377.5 352 61.1
Gohir.A02G112711 Gossypium hirsutum HOM05D005786 ORTHO05D006946 1.7e-102 376.7 298 66.1
Ciclev10012322m.g Citrus clementina HOM05D005786 ORTHO05D006946 2.2e-102 376.3 299 66.2
Gohir.D03G060604 Gossypium hirsutum HOM05D005786 ORTHO05D006946 2.2e-102 376.3 298 66.1
PGR031G0068 Punica granatum HOM05D005786 ORTHO05D006946 2.2e-102 376.3 295 67.8
HanXRQChr04g0101081 Helianthus annuus HOM05D005786 ORTHO05D006946 6.4e-102 374.8 302 68.2
CSS0002276 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 1.9e-101 373.2 313 64.5
Gorai.002G056000 Gossypium raimondii HOM05D005786 ORTHO05D006946 2.4e-101 372.9 301 65.8
TAR633G0414 Trochodendron aralioides HOM05D005786 ORTHO05D006946 2.4e-101 372.9 291 67.4
Aa31LG2G2390 Aethionema arabicum HOM05D005786 ORTHO05D006946 4.1e-101 372.1 284 65.1
MSTRG.335 Avicennia marina HOM05D005786 ORTHO05D006946 7.0e-101 371.3 307 65.5
Manes.13G003500 Manihot esculenta HOM05D005786 ORTHO05D006946 7.0e-101 371.3 295 67.8
Carub.0002s1084 Capsella rubella HOM05D005786 ORTHO05D006946 2.0e-100 369.8 293 64.2
CARHR056920 Cardamine hirsuta HOM05D005786 ORTHO05D006946 2.0e-100 369.8 300 63.0
Cfa006249 Carpinus fangiana HOM05D005786 ORTHO05D006946 3.5e-100 369.0 294 66.3
THA.LOC104805701 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 3.5e-100 369.0 291 65.6
Dinv15702 Davidia involucrata HOM05D005786 ORTHO05D006946 1.3e-99 367.1 307 65.5
THA.LOC104823809 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 1.3e-99 367.1 269 69.1
AT1G65270 Arabidopsis thaliana HOM05D005786 ORTHO05D006946 1.7e-99 366.7 297 64.0
SalBow6G2392 Salvia bowleyana HOM05D005786 ORTHO05D006946 1.7e-99 366.7 299 65.2
CAN.G37.2 Capsicum annuum HOM05D005786 ORTHO05D006946 3.0e-99 365.9 312 66.0
AL2G20300 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 3.9e-99 365.5 297 63.6
Dinv29083 Davidia involucrata HOM05D005786 ORTHO05D006946 5.0e-99 365.2 312 66.7
ECA232G2695 Erigeron canadensis HOM05D005786 ORTHO05D006946 8.6e-99 364.4 294 67.7
MD04G1246900 Malus domestica HOM05D005786 ORTHO05D006946 8.6e-99 364.4 319 63.3
CANSAT54G1960 Cannabis sativa HOM05D005786 ORTHO05D006946 1.1e-98 364.0 304 64.5
C04p43640 Brassica napus HOM05D005786 ORTHO05D006946 2.5e-98 362.8 296 65.2
Thhalv10004459m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 3.3e-98 362.5 312 63.8
Sp7g05900 Schrenkiella parvula HOM05D005786 ORTHO05D006946 3.3e-98 362.5 296 65.2
BcaB06g27020 Brassica carinata HOM05D005786 ORTHO05D006946 4.3e-98 362.1 297 65.0
BcaC02g09515 Brassica carinata HOM05D005786 ORTHO05D006946 4.3e-98 362.1 296 64.9
Sopen04g017810 Solanum pennellii HOM05D005786 ORTHO05D006946 4.3e-98 362.1 285 68.8
BcaB05g24100 Brassica carinata HOM05D005786 ORTHO05D006946 5.6e-98 361.7 287 64.1
Thhalv10018947m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 5.6e-98 361.7 294 61.6
Lalb_Chr03g0038061 Lupinus albus HOM05D005786 ORTHO05D006946 5.6e-98 361.7 302 64.2
FvH4_6g00240 Fragaria vesca HOM05D005786 ORTHO05D006946 9.5e-98 360.9 307 63.5
RcHm_v2.0_Chr3g0447611 Rosa chinensis HOM05D005786 ORTHO05D006946 9.5e-98 360.9 306 64.1
BraA04t16680Z Brassica rapa HOM05D005786 ORTHO05D006946 1.2e-97 360.5 303 63.7
Nitab4.5_0003825g0070 Nicotiana tabacum HOM05D005786 ORTHO05D006946 1.6e-97 360.1 283 68.2
Prupe.6G363100 Prunus persica HOM05D005786 ORTHO05D006946 2.1e-97 359.8 309 64.7
arahy.Tifrunner.gnm1.ann1.BC747V Arachis hypogaea HOM05D005786 ORTHO05D006946 2.8e-97 359.4 298 64.1
Atru.chr12.1725 Acer truncatum HOM05D005786 ORTHO05D006946 4.7e-97 358.6 268 67.5
arahy.Tifrunner.gnm1.ann1.K5KE50 Arachis hypogaea HOM05D005786 ORTHO05D006946 4.7e-97 358.6 298 64.1
A04p10160 Brassica napus HOM05D005786 ORTHO05D006946 1.4e-96 357.1 296 64.5
PSO210G0333 Papaver somniferum HOM05D005786 ORTHO05D006946 1.8e-96 356.7 308 60.7
PSO832G0344 Papaver somniferum HOM05D005786 ORTHO05D006946 1.8e-96 356.7 305 61.0
CiPaw.07G082100 Carya illinoinensis HOM05D005786 ORTHO05D006946 2.3e-96 356.3 294 62.2
Ca_08003_v3 Cicer arietinum L. HOM05D005786 ORTHO05D006946 2.3e-96 356.3 299 62.2
MD12G1263300 Malus domestica HOM05D005786 ORTHO05D006946 6.8e-96 354.8 319 61.4
Medtr7g080350 Medicago truncatula HOM05D005786 ORTHO05D006946 6.8e-96 354.8 300 63.0
Lsat_1_v5_gn_0_14820 Lactuca sativa HOM05D005786 ORTHO05D006946 8.9e-96 354.4 317 62.1
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 8.9e-96 354.4 300 61.7
VMungo1383G2134 Vigna mungo HOM05D005786 ORTHO05D006946 2.6e-95 352.8 297 62.0
Sp5g19940 Schrenkiella parvula HOM05D005786 ORTHO05D006946 3.4e-95 352.4 295 61.0
Hund07363 Selenicereus undatus HOM05D005786 ORTHO05D006946 3.4e-95 352.4 307 61.2
Phvul.008G052600 Phaseolus vulgaris HOM05D005786 ORTHO05D006946 5.8e-95 351.7 297 61.3
Sc16g0010480 Simmondsia chinensis HOM05D005786 ORTHO05D006946 9.8e-95 350.9 293 62.8
TWI18G0853 Tripterygium wilfordii HOM05D005786 ORTHO05D006946 9.8e-95 350.9 292 63.7
BraA02t06369Z Brassica rapa HOM05D005786 ORTHO05D006946 2.2e-94 349.7 285 63.2
DCAR_030004 Daucus carota HOM05D005786 ORTHO05D006946 4.9e-94 348.6 282 65.2
Potri.019G055100 Populus trichocarpa HOM05D005786 ORTHO05D006946 8.3e-94 347.8 299 63.5
A02p13150 Brassica napus HOM05D005786 ORTHO05D006946 1.4e-93 347.1 287 63.4
Aqoxy5G04319 Aquilegia oxysepala HOM05D005786 ORTHO05D006946 5.4e-93 345.1 291 63.2
Lj1g0012134 Lotus japonicus HOM05D005786 ORTHO05D006946 1.0e-91 340.9 294 60.5
Glyma.09G248700 Glycine max HOM05D005786 ORTHO05D006946 2.3e-91 339.7 297 59.9
SGA_v2.0_scaffold340G49308 Striga asiatica HOM05D005786 ORTHO05D006946 2.3e-91 339.7 299 62.5
Glyma.18G244000 Glycine max HOM05D005786 ORTHO05D006946 5.1e-91 338.6 269 63.6
Sed0025282 Sechium edule HOM05D005786 ORTHO05D006946 5.1e-91 338.6 291 61.5
MBI07_g02892_MAGBIO Magnolia biondii HOM05D005786 ORTHO05D006946 1.9e-90 336.7 266 67.7
CDE04G1735 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 8.1e-89 331.3 296 60.8
Sabra19G0064300 Salix brachista HOM05D005786 ORTHO05D006946 8.1e-89 331.3 332 56.9
C02p21270 Brassica napus HOM05D005786 ORTHO05D006946 1.4e-88 330.5 300 58.0
CsaV3_1G044270 Cucumis sativus L. HOM05D005786 ORTHO05D006946 3.1e-88 329.3 281 61.2
FAN05G2398 Fragaria x ananassa HOM05D005786 ORTHO05D006946 4.0e-88 328.9 326 58.3
MELO3C010021.2 Cucumis melo HOM05D005786 ORTHO05D006946 5.2e-88 328.6 281 61.6
Nitab4.5_0000248g0060 Nicotiana tabacum HOM05D005786 ORTHO05D006946 5.2e-88 328.6 283 64.3
FAN09G1835 Fragaria x ananassa HOM05D005786 ORTHO05D006946 3.4e-87 325.9 326 57.7
Peaxi162Scf01053g00210 Petunia axillaris HOM05D005786 ORTHO05D006946 4.4e-87 325.5 292 61.6
CDE07G0365 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 7.6e-87 324.7 294 60.2
ATR0743G231 Amborella trichopoda HOM05D005786 ORTHO05D006946 3.8e-86 322.4 294 59.2
EL10Ac4g10004 Beta vulgaris HOM05D005786 ORTHO05D006946 1.4e-85 320.5 297 57.9
Lsat_1_v5_gn_2_63981 Lactuca sativa HOM05D005786 ORTHO05D006946 4.1e-85 318.9 300 60.3
HPP92_023718 Vanilla planifolia HOM05D005786 ORTHO05D006946 7.1e-85 318.2 296 57.1
AUR62006638 Chenopodium quinoa HOM05D005786 ORTHO05D006946 1.3e-83 313.9 311 54.7
FAN14G0011 Fragaria x ananassa HOM05D005786 ORTHO05D006946 3.9e-83 312.4 334 54.5
SEGI_32803 Sequoiadendron giganteum HOM05D005786 ORTHO05D006946 9.9e-79 297.7 301 55.5
CSS0048270 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 3.2e-77 292.7 245 62.4
Zm00001eb168750 Zea mays HOM05D005786 ORTHO05D006946 7.1e-77 291.6 300 53.3
Os11g0264600 Oryza sativa ssp. japonica HOM05D005786 ORTHO05D006946 6.0e-76 288.5 235 62.1
unitig_0.g385 Utricularia gibba HOM05D005786 ORTHO05D006946 1.9e-74 283.5 292 53.8
CARHR216460 Cardamine hirsuta HOM05D005786 ORTHO05D006946 2.7e-68 263.1 193 65.8
Actinidia03265 Actinidia chinensis HOM05D005786 ORTHO05D006946 4.9e-62 242.3 185 65.9
Solyc04g047720.4 Solanum lycopersicum HOM05D005786 ORTHO05D006946 9.6e-58 228.0 182 66.5
SMO203G0033 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 1.6e-57 227.3 302 48.7
Psat3g102080 Pisum sativum HOM05D005786 ORTHO05D006946 1.5e-55 220.7 194 59.3
Mapoly0069s0067 Marchantia polymorpha HOM05D005786 ORTHO05D006946 3.0e-51 206.5 297 42.4
QL01p048186 Quercus lobata HOM05D005786 ORTHO05D006946 1.1e-50 204.5 168 63.1
BcaC03g14691 Brassica carinata HOM05D005786 ORTHO05D006946 9.7e-50 201.4 210 51.4
Eucgr.H01412 Eucalyptus grandis HOM05D005786 ORTHO05D006946 4.8e-49 199.1 141 66.7
vmacro19569 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 4.5e-47 192.6 182 59.3
SMO357G0021 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 2.9e-46 189.9 300 44.0
AagrBONN_evm.TU.Sc2ySwM_368.936 Anthoceros agrestis HOM05D005786 ORTHO05D006946 7.2e-45 185.3 297 38.4
Haze_04585 Corylus avellana HOM05D005786 ORTHO05D006946 1.1e-42 177.9 157 60.5
Haze_04584 Corylus avellana HOM05D005786 ORTHO05D006946 1.7e-41 174.1 125 72.8
AagrBONN_evm.TU.Sc2ySwM_117.2462 Anthoceros agrestis HOM05D005786 ORTHO05D006946 2.2e-41 173.7 274 37.6
Pp3c3_22280 Physcomitrium patens HOM05D005786 ORTHO05D006946 1.8e-40 170.6 303 37.3
Cpa.g.sc123.39 Carica papaya HOM05D005786 ORTHO05D006946 2.4e-40 170.2 223 49.3
FAN02G1732 Fragaria x ananassa HOM05D005786 ORTHO05D006946 1.5e-39 167.5 166 56.6
CSS0025324 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 2.6e-39 166.8 152 61.2
CSS0033529 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 5.1e-35 152.5 153 56.9
vmacro19570 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 4.8e-33 146.0 105 72.4
Cpa.g.sc123.40 Carica papaya HOM05D005786 ORTHO05D006946 2.4e-32 143.7 104 71.2
ClCG03G010290 Citrullus lanatus HOM05D005786 ORTHO05D006946 1.1e-29 134.8 138 55.8
Medtr3g103380 Medicago truncatula HOM05D005786 ORTHO05D006946 1.1e-24 118.2 89 59.6
AL2G20340 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 3.1e-24 116.7 89 68.5
Eucgr.H01411 Eucalyptus grandis HOM05D005786 ORTHO05D006946 1.7e-22 110.9 79 73.4
CBR_g36458 Chara braunii HOM05D005786 ORTHO05D006946 1.5e-21 107.8 278 36.0
Oeu040717.1 Olea europaea HOM05D005786 ORTHO05D006946 7.2e-21 105.5 110 57.3
ClCG03G010310 Citrullus lanatus HOM05D005786 ORTHO05D006946 5.2e-19 99.4 118 51.7
Ah.04g159110 Amaranthus hybridus HOM05D005786 ORTHO05D006946 5.7e-18 95.9 292 30.1
CARHR216470 Cardamine hirsuta HOM05D005786 ORTHO05D006946 9.7e-18 95.1 101 57.4
BcaB04g17978 Brassica carinata HOM05D005786 ORTHO05D006946 1.5e-13 81.3 110 40.9
MCO14G575 Micromonas commoda HOM05D005786 ORTHO05D006946 8.0e-12 75.5 299 27.1
BolC2t08267H Brassica oleracea HOM05D005786 ORTHO05D006946 3.4e-10 70.1 88 53.4
PRCOL_00005036 Prasinoderma coloniale HOM05D005786 ORTHO05D006946 5.7e-10 69.3 169 29.6


User provided reference genes

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