Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g03780 Coffea canephora HOM05D006840 ORTHO05D008588 4.4e-167 591.3 310 100.0
Peaxi162Scf00529g00710 Petunia axillaris HOM05D006840 ORTHO05D008588 1.7e-110 403.3 304 69.4
Rhsim06G0181200 Rhododendron simsii HOM05D006840 ORTHO05D008588 1.1e-106 390.6 255 78.4
GSVIVG01019072001 Vitis vinifera HOM05D006840 ORTHO05D008588 1.3e-105 387.1 301 69.4
Manes.13G004800 Manihot esculenta HOM05D006840 ORTHO05D008588 3.7e-105 385.6 313 68.1
PGSC0003DMG400010521 Solanum tuberosum HOM05D006840 ORTHO05D008588 4.8e-105 385.2 264 73.1
Solyc04g056580.3 Solanum lycopersicum HOM05D006840 ORTHO05D008588 8.2e-105 384.4 264 72.7
Nitab4.5_0000083g0050 Nicotiana tabacum HOM05D006840 ORTHO05D008588 1.1e-104 384.0 304 66.8
CSS0048734 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 5.3e-104 381.7 256 75.8
Sopen04g025500 Solanum pennellii HOM05D006840 ORTHO05D008588 5.3e-104 381.7 264 72.7
Gohir.D08G247000 Gossypium hirsutum HOM05D006840 ORTHO05D008588 9.0e-104 380.9 266 72.9
Sabra13G0078300 Salix brachista HOM05D006840 ORTHO05D008588 3.4e-103 379.0 313 67.1
CiPaw.08G114500 Carya illinoinensis HOM05D006840 ORTHO05D008588 4.5e-103 378.6 309 66.7
Duzib106G1767 Durio zibethinus HOM05D006840 ORTHO05D008588 1.0e-102 377.5 309 66.3
Gohir.A08G226600 Gossypium hirsutum HOM05D006840 ORTHO05D008588 1.0e-102 377.5 259 73.7
Potri.013G085300 Populus trichocarpa HOM05D006840 ORTHO05D008588 1.0e-102 377.5 317 66.2
CAN.G642.5 Capsicum annuum HOM05D006840 ORTHO05D008588 1.3e-102 377.1 301 65.1
MSTRG.27397 Avicennia marina HOM05D006840 ORTHO05D008588 1.7e-102 376.7 316 64.9
Eucgr.B01421 Eucalyptus grandis HOM05D006840 ORTHO05D008588 2.2e-102 376.3 307 66.1
Nitab4.5_0009290g0020 Nicotiana tabacum HOM05D006840 ORTHO05D008588 2.9e-102 375.9 314 64.3
SGA_v2.0_scaffold62G21495 Striga asiatica HOM05D006840 ORTHO05D008588 5.0e-102 375.2 252 75.0
QL01p049413 Quercus lobata HOM05D006840 ORTHO05D008588 1.9e-101 373.2 306 65.7
EL10Ac4g09995 Beta vulgaris HOM05D006840 ORTHO05D008588 2.5e-101 372.9 316 63.6
AUR62000298 Chenopodium quinoa HOM05D006840 ORTHO05D008588 1.6e-100 370.2 257 73.2
Lj1A575G23 Lonicera japonica HOM05D006840 ORTHO05D008588 1.6e-100 370.2 252 74.6
PGR119G2059 Punica granatum HOM05D006840 ORTHO05D008588 3.6e-100 369.0 315 64.1
Migut.F02113 Erythranthe guttata HOM05D006840 ORTHO05D008588 4.6e-100 368.6 273 68.1
vmacro12041 Vaccinium macrocarpon HOM05D006840 ORTHO05D008588 4.6e-100 368.6 327 64.2
AUR62006644 Chenopodium quinoa HOM05D006840 ORTHO05D008588 7.9e-100 367.9 254 72.4
Glyma.18G243000 Glycine max HOM05D006840 ORTHO05D008588 1.0e-99 367.5 305 64.9
RcHm_v2.0_Chr3g0447741 Rosa chinensis HOM05D006840 ORTHO05D008588 1.0e-99 367.5 285 67.0
Gorai.004G263500 Gossypium raimondii HOM05D006840 ORTHO05D008588 1.3e-99 367.1 291 66.7
DCAR_028385 Daucus carota HOM05D006840 ORTHO05D008588 5.1e-99 365.2 301 66.4
Atru.BG.274.p Acer truncatum HOM05D006840 ORTHO05D008588 8.7e-99 364.4 235 76.6
HanXRQChr15g0492181 Helianthus annuus HOM05D006840 ORTHO05D008588 1.9e-98 363.2 268 70.5
Prupe.6G362300 Prunus persica HOM05D006840 ORTHO05D008588 2.5e-98 362.8 261 70.5
CANSAT54G1191 Cannabis sativa HOM05D006840 ORTHO05D008588 7.4e-98 361.3 269 68.0
ECA232G2794 Erigeron canadensis HOM05D006840 ORTHO05D008588 7.4e-98 361.3 295 64.1
Lsat_1_v5_gn_0_18400 Lactuca sativa HOM05D006840 ORTHO05D008588 7.4e-98 361.3 269 69.1
MD12G1264100 Malus domestica HOM05D006840 ORTHO05D008588 7.4e-98 361.3 259 68.3
ATR0215G001 Amborella trichopoda HOM05D006840 ORTHO05D008588 2.2e-97 359.8 249 71.9
FvH4_6g00410 Fragaria vesca HOM05D006840 ORTHO05D008588 2.8e-97 359.4 270 67.4
Glyma.09G249400 Glycine max HOM05D006840 ORTHO05D008588 3.7e-97 359.0 305 63.3
MELO3C010008.2 Cucumis melo HOM05D006840 ORTHO05D008588 8.2e-97 357.8 266 69.2
Oeu020467.1 Olea europaea HOM05D006840 ORTHO05D008588 8.2e-97 357.8 227 78.9
FAN09G3232 Fragaria x ananassa HOM05D006840 ORTHO05D008588 1.1e-96 357.5 270 67.0
Sed0002286 Sechium edule HOM05D006840 ORTHO05D008588 1.1e-96 357.5 264 67.4
MD04G1245900 Malus domestica HOM05D006840 ORTHO05D008588 1.8e-96 356.7 245 71.4
PSO357G0633 Papaver somniferum HOM05D006840 ORTHO05D008588 1.8e-96 356.7 260 70.4
arahy.Tifrunner.gnm1.ann1.SXK3FV Arachis hypogaea HOM05D006840 ORTHO05D008588 5.3e-96 355.1 257 71.6
Lj1g0027213 Lotus japonicus HOM05D006840 ORTHO05D008588 9.1e-96 354.4 315 61.6
CsaV3_1G044150 Cucumis sativus L. HOM05D006840 ORTHO05D008588 2.0e-95 353.2 258 69.4
PSO170G0121 Papaver somniferum HOM05D006840 ORTHO05D008588 4.5e-95 352.1 260 69.6
Phvul.008G053500 Phaseolus vulgaris HOM05D006840 ORTHO05D008588 4.5e-95 352.1 311 62.1
HanXRQChr15g0491491 Helianthus annuus HOM05D006840 ORTHO05D008588 7.7e-95 351.3 293 63.8
TWI75G0198 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 1.0e-94 350.9 311 62.4
CSS0032443 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 1.7e-94 350.1 232 75.9
Sc06g0005020 Simmondsia chinensis HOM05D006840 ORTHO05D008588 1.7e-94 350.1 279 64.9
Lalb_Chr03g0038681 Lupinus albus HOM05D006840 ORTHO05D008588 2.2e-94 349.7 265 67.5
Hund21908 Selenicereus undatus HOM05D006840 ORTHO05D008588 2.2e-94 349.7 295 63.4
SalBow1G4059 Salvia bowleyana HOM05D006840 ORTHO05D008588 5.0e-94 348.6 263 69.2
TWI36G0520 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 5.0e-94 348.6 256 69.1
VMungo1383G2163 Vigna mungo HOM05D006840 ORTHO05D008588 5.0e-94 348.6 310 61.9
TPR.G23771 Trifolium pratense HOM05D006840 ORTHO05D008588 1.9e-93 346.7 260 68.1
THA.LOC104821923 Tarenaya hassleriana HOM05D006840 ORTHO05D008588 5.5e-93 345.1 257 69.6
Carub.0002s1076 Capsella rubella HOM05D006840 ORTHO05D008588 6.1e-92 341.7 254 68.1
ClCG03G011690 Citrullus lanatus HOM05D006840 ORTHO05D008588 1.0e-91 340.9 276 64.9
arahy.Tifrunner.gnm1.ann1.1ED5VS Arachis hypogaea HOM05D006840 ORTHO05D008588 5.1e-91 338.6 257 68.9
AL2G20230 Arabidopsis lyrata HOM05D006840 ORTHO05D008588 5.7e-90 335.1 250 67.2
AT1G65230 Arabidopsis thaliana HOM05D006840 ORTHO05D008588 5.7e-90 335.1 254 66.1
CARHR056840 Cardamine hirsuta HOM05D006840 ORTHO05D008588 5.7e-90 335.1 255 67.1
Medtr7g080220 Medicago truncatula HOM05D006840 ORTHO05D008588 9.7e-90 334.3 259 67.6
Psat3g102720 Pisum sativum HOM05D006840 ORTHO05D008588 1.3e-89 334.0 310 59.7
Thhalv10018969m.g Eutrema salsugineum HOM05D006840 ORTHO05D008588 6.3e-89 331.6 292 60.6
Aa31LG2G2360 Aethionema arabicum HOM05D006840 ORTHO05D008588 8.2e-89 331.3 254 65.0
Dinv29090 Davidia involucrata HOM05D006840 ORTHO05D008588 1.4e-88 330.5 257 68.5
A02p13110 Brassica napus HOM05D006840 ORTHO05D008588 3.1e-88 329.3 280 61.8
BraA02t06367Z Brassica rapa HOM05D006840 ORTHO05D008588 3.1e-88 329.3 280 61.8
BcaB05g24097 Brassica carinata HOM05D006840 ORTHO05D008588 4.1e-88 328.9 280 61.8
BcaC03g14685 Brassica carinata HOM05D006840 ORTHO05D008588 6.9e-88 328.2 304 59.2
C02p21250 Brassica napus HOM05D006840 ORTHO05D008588 1.2e-87 327.4 252 65.9
BolC2t08265H Brassica oleracea HOM05D006840 ORTHO05D008588 1.2e-87 327.4 254 65.0
HPP92_000447 Vanilla planifolia HOM05D006840 ORTHO05D008588 2.6e-87 326.2 264 63.3
Ciclev10013335m.g Citrus clementina HOM05D006840 ORTHO05D008588 5.9e-87 325.1 319 61.1
Nn7g37259 Nelumbo nucifera HOM05D006840 ORTHO05D008588 2.2e-86 323.2 298 60.4
Thecc.05G192600 Theobroma cacao HOM05D006840 ORTHO05D008588 4.2e-85 318.9 277 60.6
Cfa006254 Carpinus fangiana HOM05D006840 ORTHO05D008588 2.7e-84 316.2 224 69.6
Aqoxy5G00025 Aquilegia oxysepala HOM05D006840 ORTHO05D008588 8.0e-84 314.7 232 68.5
Sp5g19910 Schrenkiella parvula HOM05D006840 ORTHO05D008588 6.7e-83 311.6 287 58.5
FAN02G1048 Fragaria x ananassa HOM05D006840 ORTHO05D008588 8.8e-83 311.2 240 65.4
Os01g0912700 Oryza sativa ssp. japonica HOM05D006840 ORTHO05D008588 8.8e-83 311.2 320 57.2
FAN05G5535 Fragaria x ananassa HOM05D006840 ORTHO05D008588 2.6e-82 309.7 240 65.0
Cpa.g.sc39.39 Carica papaya HOM05D006840 ORTHO05D008588 9.7e-82 307.8 253 64.8
Haze_04572 Corylus avellana HOM05D006840 ORTHO05D008588 4.8e-81 305.4 269 61.3
FAN14G4782 Fragaria x ananassa HOM05D006840 ORTHO05D008588 6.3e-81 305.1 239 64.9
CDE02G0188 Ceratophyllum demersum HOM05D006840 ORTHO05D008588 7.0e-80 301.6 235 63.4
Lj1A595G27 Lonicera japonica HOM05D006840 ORTHO05D008588 7.2e-77 291.6 280 58.9
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 9.4e-77 291.2 268 58.2
Ca_07995_v3 Cicer arietinum L. HOM05D006840 ORTHO05D008588 1.0e-75 287.7 238 62.2
unitig_22.g5732 Utricularia gibba HOM05D006840 ORTHO05D008588 1.8e-72 276.9 226 65.0
Actinidia31085 Actinidia chinensis HOM05D006840 ORTHO05D008588 9.1e-72 274.6 179 77.1
MBI19_g03256_MAGBIO Magnolia biondii HOM05D006840 ORTHO05D008588 1.9e-69 266.9 271 57.9
SMO353G0271 Selaginella moellendorffii HOM05D006840 ORTHO05D008588 4.0e-67 259.2 242 58.7
Pp3c9_3810 Physcomitrium patens HOM05D006840 ORTHO05D008588 3.7e-65 252.7 313 46.0
Mapoly0031s0189 Marchantia polymorpha HOM05D006840 ORTHO05D008588 2.4e-64 250.0 259 50.6
AagrBONN_evm.TU.Sc2ySwM_228.2548 Anthoceros agrestis HOM05D006840 ORTHO05D008588 1.6e-60 237.3 237 53.6
Pp3c15_10950 Physcomitrium patens HOM05D006840 ORTHO05D008588 3.5e-55 219.5 208 52.4
MBI07_g00615_MAGBIO Magnolia biondii HOM05D006840 ORTHO05D008588 2.3e-54 216.9 148 75.7
SEGI_09257 Sequoiadendron giganteum HOM05D006840 ORTHO05D008588 1.2e-52 211.1 195 56.9
CBR_g8822 Chara braunii HOM05D006840 ORTHO05D008588 6.0e-47 192.2 232 46.6
Actinidia34706 Actinidia chinensis HOM05D006840 ORTHO05D008588 1.4e-24 117.9 122 55.7
SEGI_35940 Sequoiadendron giganteum HOM05D006840 ORTHO05D008588 3.5e-23 113.2 111 58.6
MCO02G353 Micromonas commoda HOM05D006840 ORTHO05D008588 6.0e-23 112.5 221 33.5
Cre12.g536800 Chlamydomonas reinhardtii HOM05D006840 ORTHO05D008588 1.3e-17 94.7 225 32.0
Zm00001eb424130 Zea mays HOM05D006840 ORTHO05D008588 4.6e-15 86.3 70 60.0
Zm00001eb424170 Zea mays HOM05D006840 ORTHO05D008588 4.6e-15 86.3 70 60.0
PRCOL_00007103 Prasinoderma coloniale HOM05D006840 ORTHO05D008588 5.8e-10 69.3 226 29.2


User provided reference genes

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