Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g03690 Coffea canephora HOM05D007881 ORTHO05D009922 5.2e-32 140.6 78 100.0
Oeu034791.1 Olea europaea HOM05D007881 ORTHO05D009922 3.4e-15 84.7 78 60.3
Lsat_1_v5_gn_1_127981 Lactuca sativa HOM05D007881 ORTHO05D009922 5.7e-15 84.0 71 56.3
vmacro10404 Vaccinium macrocarpon HOM05D007881 ORTHO05D009922 5.7e-15 84.0 74 58.1
Nitab4.5_0000083g0100 Nicotiana tabacum HOM05D007881 ORTHO05D009922 9.8e-15 83.2 79 54.4
SalBow1G5699 Salvia bowleyana HOM05D007881 ORTHO05D009922 4.9e-14 80.9 75 52.0
CAN.G217.11 Capsicum annuum HOM05D007881 ORTHO05D009922 8.3e-14 80.1 82 52.4
Nitab4.5_0001435g0080 Nicotiana tabacum HOM05D007881 ORTHO05D009922 1.4e-13 79.3 80 55.0
AUR62006650 Chenopodium quinoa HOM05D007881 ORTHO05D009922 4.1e-13 77.8 76 56.6
Manes.12G005400 Manihot esculenta HOM05D007881 ORTHO05D009922 4.1e-13 77.8 76 52.6
AUR62000305 Chenopodium quinoa HOM05D007881 ORTHO05D009922 5.4e-13 77.4 76 50.0
CSS0004298 Camellia sinensis var. sinensis HOM05D007881 ORTHO05D009922 9.2e-13 76.6 77 48.1
MD04G1245200 Malus domestica HOM05D007881 ORTHO05D009922 3.5e-12 74.7 76 48.7
Sopen04g025320 Solanum pennellii HOM05D000039 ORTHO05D000366 3.5e-12 74.7 78 50.0
Ciclev10033256m.g Citrus clementina HOM05D007881 ORTHO05D009922 4.6e-12 74.3 78 50.0
Eucgr.B01417 Eucalyptus grandis HOM05D007881 ORTHO05D009922 5.9e-12 73.9 76 50.0
RcHm_v2.0_Chr3g0447831 Rosa chinensis HOM05D007881 ORTHO05D009922 5.9e-12 73.9 77 59.7
Nn7g37671 Nelumbo nucifera HOM05D007881 ORTHO05D009922 7.8e-12 73.6 42 71.4
EL10Ac4g09960 Beta vulgaris HOM05D007881 ORTHO05D009922 1.3e-11 72.8 68 60.3
Carub.0001s0535 Capsella rubella HOM05D007881 ORTHO05D009922 1.3e-11 72.8 64 54.7
COL.COLO4_38031 Corchorus olitorius HOM05D007881 ORTHO05D009922 1.3e-11 72.8 77 50.6
ECA232G2986 Erigeron canadensis HOM05D005940 ORTHO05D007027 1.7e-11 72.4 40 75.0
FAN02G0717 Fragaria x ananassa HOM05D007881 ORTHO05D009922 1.7e-11 72.4 41 73.2
MD12G1086700 Malus domestica HOM05D007881 ORTHO05D009922 1.7e-11 72.4 76 51.3
Sc16g0010420 Simmondsia chinensis HOM05D003813 ORTHO05D004557 1.7e-11 72.4 77 49.4
Solyc04g056425.1 Solanum lycopersicum HOM05D007881 ORTHO05D009922 1.7e-11 72.4 76 47.4
HanXRQChr16g0510911 Helianthus annuus HOM05D007881 ORTHO05D009922 2.3e-11 72.0 70 51.4
Peaxi162Scf00048g00055 Petunia axillaris HOM05D007881 ORTHO05D009922 2.3e-11 72.0 42 66.7
Sp1g04830 Schrenkiella parvula HOM05D007881 ORTHO05D009922 2.3e-11 72.0 65 55.4
PGR119G1449 Punica granatum HOM05D007881 ORTHO05D009922 2.9e-11 71.6 67 53.7
AL1G15960 Arabidopsis lyrata HOM05D007881 ORTHO05D009922 3.9e-11 71.2 64 54.7
FvH4_6g00460 Fragaria vesca HOM05D007881 ORTHO05D009922 3.9e-11 71.2 41 70.7
Prupe.6G361800 Prunus persica HOM05D007881 ORTHO05D009922 3.9e-11 71.2 76 55.3
Thecc.05G194300 Theobroma cacao HOM05D007881 ORTHO05D009922 3.9e-11 71.2 77 50.6
CARHR005530 Cardamine hirsuta HOM05D007881 ORTHO05D009922 5.0e-11 70.9 63 50.8
DCAR_007684 Daucus carota HOM05D007881 ORTHO05D009922 5.0e-11 70.9 42 71.4
Migut.F02122 Erythranthe guttata HOM05D007881 ORTHO05D009922 6.6e-11 70.5 41 78.0
CiPaw.07G080900 Carya illinoinensis HOM05D007881 ORTHO05D009922 1.9e-10 68.9 42 69.0
ClCG03G010640 Citrullus lanatus HOM05D007881 ORTHO05D009922 1.9e-10 68.9 41 73.2
FAN09G3126 Fragaria x ananassa HOM05D007881 ORTHO05D009922 1.9e-10 68.9 41 68.3
THA.LOC109117253 Tarenaya hassleriana HOM05D007881 ORTHO05D009922 1.9e-10 68.9 64 53.1
AT1G06010 Arabidopsis thaliana HOM05D007881 ORTHO05D009922 2.5e-10 68.6 77 46.8
Gohir.A05G392600 Gossypium hirsutum HOM05D007881 ORTHO05D009922 2.5e-10 68.6 77 49.4
Gohir.D04G024500 Gossypium hirsutum HOM05D007881 ORTHO05D009922 2.5e-10 68.6 77 49.4
Gorai.012G027000 Gossypium raimondii HOM05D007881 ORTHO05D009922 2.5e-10 68.6 77 49.4
TAR362G1041 Trochodendron aralioides HOM05D007881 ORTHO05D009922 3.3e-10 68.2 40 72.5
Actinidia03288 Actinidia chinensis HOM05D007881 ORTHO05D009922 4.3e-10 67.8 77 45.5
Potri.012G134200 Populus trichocarpa HOM05D007881 ORTHO05D009922 4.3e-10 67.8 42 66.7
Potri.015G136500 Populus trichocarpa HOM05D007881 ORTHO05D009922 4.3e-10 67.8 62 58.1
QL12p018644 Quercus lobata HOM05D007881 ORTHO05D009922 4.3e-10 67.8 39 69.2
Atru.chr6.1889 Acer truncatum HOM05D007881 ORTHO05D009922 5.6e-10 67.4 78 46.2
Lj3g0003474 Lotus japonicus HOM05D007881 ORTHO05D009922 5.6e-10 67.4 83 45.8
BcaC07g36818 Brassica carinata HOM05D007881 ORTHO05D009922 7.3e-10 67.0 42 64.3
A08p36200 Brassica napus HOM05D007881 ORTHO05D009922 7.3e-10 67.0 42 64.3
BolC8t47025H Brassica oleracea HOM05D007881 ORTHO05D009922 7.3e-10 67.0 42 64.3
BraA08t35524Z Brassica rapa HOM05D007881 ORTHO05D009922 7.3e-10 67.0 42 64.3
Cpa.g.sc9.142 Carica papaya HOM05D007881 ORTHO05D009922 9.5e-10 66.6 42 64.3
MELO3C010052.2 Cucumis melo HOM05D007881 ORTHO05D009922 2.1e-09 65.5 43 65.1
Sabra15G0148100 Salix brachista HOM05D007881 ORTHO05D009922 2.1e-09 65.5 41 65.9
CsaV3_1G044490 Cucumis sativus L. HOM05D007881 ORTHO05D009922 2.8e-09 65.1 43 62.8
Thhalv10009243m.g Eutrema salsugineum HOM05D007881 ORTHO05D009922 2.8e-09 65.1 38 71.1
HPP92_003553 Vanilla planifolia HOM05D007881 ORTHO05D009922 2.8e-09 65.1 42 59.5
Aqoxy3G03631 Aquilegia oxysepala HOM05D007881 ORTHO05D009922 3.6e-09 64.7 42 66.7
PGSC0003DMG400007262 Solanum tuberosum HOM05D007881 ORTHO05D009922 3.6e-09 64.7 108 40.7
GSVIVG01019086001 Vitis vinifera HOM05D007881 ORTHO05D009922 6.2e-09 63.9 62 54.8
C08p51460 Brassica napus HOM05D000559 ORTHO05D009922 8.0e-09 63.5 50 56.0
MBI17_g00966_MAGBIO Magnolia biondii HOM05D007881 ORTHO05D009922 1.0e-08 63.2 38 76.3
BcaC07g42091 Brassica carinata HOM05D007881 ORTHO05D009922 1.4e-08 62.8 38 68.4
A09p67190 Brassica napus HOM05D007881 ORTHO05D009922 1.4e-08 62.8 38 68.4
BolC8t52672H Brassica oleracea HOM05D007881 ORTHO05D009922 1.4e-08 62.8 38 68.4
Glyma.11G151200 Glycine max HOM05D007881 ORTHO05D009922 1.8e-08 62.4 38 73.7
Phvul.005G031800 Phaseolus vulgaris HOM05D007881 ORTHO05D009922 1.8e-08 62.4 38 71.1
Medtr3g032520 Medicago truncatula HOM05D007881 ORTHO05D009922 2.3e-08 62.0 40 60.0
CDE02G1687 Ceratophyllum demersum HOM05D007881 ORTHO05D009922 3.1e-08 61.6 42 64.3
arahy.Tifrunner.gnm1.ann1.FFCC7D Arachis hypogaea HOM05D007881 ORTHO05D009922 4.0e-08 61.2 42 61.9
arahy.Tifrunner.gnm1.ann1.X7CW9T Arachis hypogaea HOM05D007881 ORTHO05D009922 4.0e-08 61.2 42 61.9
TWI36G1222 Tripterygium wilfordii HOM05D007881 ORTHO05D009922 4.0e-08 61.2 77 42.9
Lalb_Chr25g0282841 Lupinus albus HOM05D007881 ORTHO05D009922 5.2e-08 60.8 41 63.4
ATR0215G006 Amborella trichopoda HOM05D007881 ORTHO05D009922 6.8e-08 60.5 40 60.0
Sed0019316 Sechium edule HOM05D007881 ORTHO05D009922 1.2e-07 59.7 36 69.4
Psat5g210160 Pisum sativum HOM05D007881 ORTHO05D009922 2.6e-07 58.5 40 57.5
arahy.Tifrunner.gnm1.ann1.FG2V1D Arachis hypogaea HOM05D007881 ORTHO05D009922 5.8e-07 57.4 42 61.9
Psat5g211080 Pisum sativum HOM05D007881 ORTHO05D009922 5.8e-07 57.4 40 55.0
Zm00001eb067480 Zea mays HOM05D007881 ORTHO05D009922 1.3e-06 56.2 41 48.8


User provided reference genes

Program Settings