Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g03530 Coffea canephora HOM05D007503 ORTHO05D009487 2.4e-37 158.3 77 100.0
Actinidia06811 Actinidia chinensis HOM05D007503 ORTHO05D009487 6.0e-25 117.1 74 79.7
GSVIVG01010020001 Vitis vinifera HOM05D007503 ORTHO05D009487 3.9e-24 114.4 64 84.4
Dinv06977 Davidia involucrata HOM05D007503 ORTHO05D009487 8.7e-24 113.2 73 78.1
vmacro20740 Vaccinium macrocarpon HOM05D007503 ORTHO05D009487 1.1e-23 112.8 74 77.0
Rhsim01G0105600 Rhododendron simsii HOM05D007503 ORTHO05D009487 1.5e-23 112.5 74 74.3
CAN.G326.18 Capsicum annuum HOM05D007503 ORTHO05D009487 3.3e-23 111.3 77 74.0
Solyc03g058340.3 Solanum lycopersicum HOM05D007503 ORTHO05D009487 4.3e-23 110.9 77 74.0
Sopen03g015570 Solanum pennellii HOM05D007503 ORTHO05D009487 4.3e-23 110.9 77 74.0
HanXRQChr02g0039651 Helianthus annuus HOM05D007503 ORTHO05D009487 2.1e-22 108.6 74 75.7
Hma1.2p1_0123F.1_g057900 Hydrangea macrophylla HOM05D007503 ORTHO05D009487 3.7e-22 107.8 60 85.0
Nitab4.5_0001653g0060 Nicotiana tabacum HOM05D007503 ORTHO05D009487 8.2e-22 106.7 60 86.7
Nitab4.5_0011656g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 1.8e-21 105.5 60 83.3
Nitab4.5_0002233g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 2.4e-21 105.1 75 73.3
ECA232G1405 Erigeron canadensis HOM05D007503 ORTHO05D009487 5.3e-21 104.0 75 66.7
PSO729G0165 Papaver somniferum HOM05D007503 ORTHO05D009487 5.3e-21 104.0 74 70.3
SalBow6G4878 Salvia bowleyana HOM05D007503 ORTHO05D009487 1.2e-20 102.8 61 78.7
DCAR_007994 Daucus carota HOM05D007503 ORTHO05D009487 2.0e-20 102.1 71 74.6
THA.LOC104815587 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 2.0e-20 102.1 77 68.8
TWI56G0335 Tripterygium wilfordii HOM05D007503 ORTHO05D009487 2.6e-20 101.7 70 68.6
Sc09g0004610 Simmondsia chinensis HOM05D007503 ORTHO05D009487 3.4e-20 101.3 60 83.3
Manes.01G240301 Manihot esculenta HOM05D007503 ORTHO05D009487 4.5e-20 100.9 73 68.5
DCAR_023852 Daucus carota HOM05D007503 ORTHO05D009487 5.9e-20 100.5 71 73.2
Glyma.18G047300 Glycine max HOM05D007503 ORTHO05D009487 5.9e-20 100.5 68 72.1
Nn1g09784 Nelumbo nucifera HOM05D007503 ORTHO05D009487 5.9e-20 100.5 64 75.0
Glyma.11G203700 Glycine max HOM05D007503 ORTHO05D009487 7.6e-20 100.1 68 72.1
Phvul.006G084000 Phaseolus vulgaris HOM05D007503 ORTHO05D009487 7.6e-20 100.1 68 72.1
THA.LOC104822606 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 1.0e-19 99.8 77 67.5
Gohir.A11G170200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 1.3e-19 99.4 71 69.0
Gohir.D11G177200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 1.3e-19 99.4 71 69.0
Gorai.007G189300 Gossypium raimondii HOM05D007503 ORTHO05D009487 1.3e-19 99.4 71 69.0
Hund06856 Selenicereus undatus HOM05D007503 ORTHO05D009487 1.3e-19 99.4 77 70.1
FvH4_1g27230 Fragaria vesca HOM05D007503 ORTHO05D009487 1.7e-19 99.0 67 71.6
FAN19G2707 Fragaria x ananassa HOM05D007503 ORTHO05D009487 1.7e-19 99.0 67 71.6
FAN23G0073 Fragaria x ananassa HOM05D007503 ORTHO05D009487 1.7e-19 99.0 67 71.6
Peaxi162Scf00253g00725 Petunia axillaris HOM05D007503 ORTHO05D009487 1.7e-19 99.0 68 73.5
Thecc.09G340100 Theobroma cacao HOM05D007503 ORTHO05D009487 2.2e-19 98.6 72 72.2
CiPaw.03G009100 Carya illinoinensis HOM05D007503 ORTHO05D009487 3.8e-19 97.8 60 80.0
Haze_14049 Corylus avellana HOM05D007503 ORTHO05D009487 3.8e-19 97.8 64 76.6
Haze_14060 Corylus avellana HOM05D007503 ORTHO05D009487 3.8e-19 97.8 64 76.6
RcHm_v2.0_Chr3g0487701 Rosa chinensis HOM05D007503 ORTHO05D009487 3.8e-19 97.8 77 68.8
A01p39280 Brassica napus HOM05D007503 ORTHO05D009487 5.0e-19 97.4 77 66.2
BcaC09g48410 Brassica carinata HOM05D007503 ORTHO05D009487 6.5e-19 97.1 77 64.9
BraA01t03971Z Brassica rapa HOM05D007503 ORTHO05D009487 6.5e-19 97.1 77 64.9
C01p50080 Brassica napus HOM05D007503 ORTHO05D009487 8.5e-19 96.7 77 64.9
BolC1t04962H Brassica oleracea HOM05D007503 ORTHO05D009487 8.5e-19 96.7 77 64.9
FAN26G0784 Fragaria x ananassa HOM05D000757 ORTHO05D000622 8.5e-19 96.7 64 75.0
Lj6g0027028 Lotus japonicus HOM05D007503 ORTHO05D009487 8.5e-19 96.7 68 70.6
Prupe.3G011500 Prunus persica HOM05D007503 ORTHO05D009487 8.5e-19 96.7 64 73.4
Migut.F01879 Erythranthe guttata HOM05D007503 ORTHO05D009487 1.1e-18 96.3 56 82.1
QL02p056384 Quercus lobata HOM05D007503 ORTHO05D009487 1.1e-18 96.3 73 68.5
AT3G14430 Arabidopsis thaliana HOM05D007503 ORTHO05D009487 1.4e-18 95.9 77 64.9
Lalb_Chr20g0117211 Lupinus albus HOM05D007503 ORTHO05D009487 1.4e-18 95.9 66 71.2
MD17G1272500 Malus domestica HOM05D007503 ORTHO05D009487 1.4e-18 95.9 64 73.4
Carub.0003s1415 Capsella rubella HOM05D007503 ORTHO05D009487 1.9e-18 95.5 77 64.9
COL.COLO4_13441 Corchorus olitorius HOM05D007503 ORTHO05D009487 1.9e-18 95.5 72 68.1
Duzib211G0566 Durio zibethinus HOM05D007503 ORTHO05D009487 1.9e-18 95.5 58 81.0
Ciclev10013261m.g Citrus clementina HOM05D007503 ORTHO05D009487 4.2e-18 94.4 77 62.3
Medtr3g063970 Medicago truncatula HOM05D007503 ORTHO05D009487 4.2e-18 94.4 69 68.1
BcaB06g25385 Brassica carinata HOM05D007503 ORTHO05D009487 5.5e-18 94.0 77 62.3
A05p34950 Brassica napus HOM05D007503 ORTHO05D009487 5.5e-18 94.0 77 62.3
BolC5t33967H Brassica oleracea HOM05D007503 ORTHO05D009487 5.5e-18 94.0 77 62.3
BraA05t22309Z Brassica rapa HOM05D007503 ORTHO05D009487 5.5e-18 94.0 77 62.3
CANSAT80G2883 Cannabis sativa HOM05D007503 ORTHO05D009487 5.5e-18 94.0 62 72.6
unitig_0.g938 Utricularia gibba HOM05D001953 ORTHO05D001904 5.5e-18 94.0 57 78.9
Eucgr.I00239 Eucalyptus grandis HOM05D007503 ORTHO05D009487 7.2e-18 93.6 68 70.6
AL3G26810 Arabidopsis lyrata HOM05D007503 ORTHO05D009487 9.3e-18 93.2 77 63.6
Sp3g12730 Schrenkiella parvula HOM05D007503 ORTHO05D009487 9.3e-18 93.2 77 62.3
BcaC05g29084 Brassica carinata HOM05D007503 ORTHO05D009487 1.2e-17 92.8 77 62.3
CARHR089340 Cardamine hirsuta HOM05D007503 ORTHO05D009487 1.2e-17 92.8 70 71.4
CDE05G2177 Ceratophyllum demersum HOM05D007503 ORTHO05D009487 2.1e-17 92.0 59 72.9
C05p52900 Brassica napus HOM05D007503 ORTHO05D009487 2.7e-17 91.7 77 62.3
Aa31LG8G1690 Aethionema arabicum HOM05D007503 ORTHO05D009487 3.6e-17 91.3 77 61.0
Thhalv10021919m.g Eutrema salsugineum HOM05D007503 ORTHO05D009487 3.6e-17 91.3 77 62.3
MD09G1282700 Malus domestica HOM05D007503 ORTHO05D009487 3.6e-17 91.3 64 70.3
Zm00001eb036330 Zea mays HOM05D007503 ORTHO05D009487 4.6e-17 90.9 77 63.6
Potri.014G105250 Populus trichocarpa HOM05D007503 ORTHO05D009487 1.0e-16 89.7 73 63.0
Aqoxy5G03063 Aquilegia oxysepala HOM05D007503 ORTHO05D009487 1.3e-16 89.4 67 68.7
Zm00001eb175060 Zea mays HOM05D007503 ORTHO05D009487 1.8e-16 89.0 75 60.0
PGR119G1426 Punica granatum HOM05D007503 ORTHO05D009487 8.7e-16 86.7 53 79.2
Pp3c11_25150 Physcomitrium patens HOM05D007503 ORTHO05D009487 2.5e-15 85.1 58 74.1
Sed0018329 Sechium edule HOM05D007503 ORTHO05D009487 4.3e-15 84.3 72 59.7
Os08g0528601 Oryza sativa ssp. japonica HOM05D007503 ORTHO05D009487 9.7e-15 83.2 76 63.2
MELO3C025073.2 Cucumis melo HOM05D007503 ORTHO05D009487 1.3e-14 82.8 66 60.6
ClCG01G008330 Citrullus lanatus HOM05D007503 ORTHO05D009487 1.6e-14 82.4 66 59.1
CsaV3_5G020250 Cucumis sativus L. HOM05D007503 ORTHO05D009487 4.8e-14 80.9 53 67.9
Sabra14G0077600 Salix brachista HOM05D007503 ORTHO05D009487 4.1e-13 77.8 73 56.2
Sabra02G0134700 Salix brachista HOM05D007503 ORTHO05D009487 6.9e-13 77.0 73 49.3
Cpa.g.c46349 Carica papaya HOM05D007503 ORTHO05D009487 2.6e-12 75.1 77 50.6
Cpa.g.sc44.91 Carica papaya HOM05D007503 ORTHO05D009487 2.6e-12 75.1 77 50.6
PGSC0003DMG400000976 Solanum tuberosum HOM05D007503 ORTHO05D009487 1.0e-11 73.2 54 72.2
Pp3c7_7140 Physcomitrium patens HOM05D007503 ORTHO05D009487 1.3e-11 72.8 51 70.6
Aa31LG10G1620 Aethionema arabicum HOM05D007503 ORTHO05D009487 4.2e-10 67.8 59 55.9
Lsat_1_v5_gn_9_48861 Lactuca sativa HOM05D007503 ORTHO05D009487 1.6e-09 65.9 56 67.9
Mapoly0109s0063 Marchantia polymorpha HOM05D007503 ORTHO05D009487 2.7e-09 65.1 42 78.6
CSS0042421 Camellia sinensis var. sinensis HOM05D007503 ORTHO05D009487 7.9e-09 63.5 47 72.3
TAR392G0002 Trochodendron aralioides HOM05D007503 ORTHO05D009487 7.9e-09 63.5 50 72.0
HPP92_021450 Vanilla planifolia HOM05D007503 ORTHO05D009487 5.1e-08 60.8 52 67.3
HanXRQChr14g0445891 Helianthus annuus HOM05D007503 ORTHO05D009487 1.1e-07 59.7 54 64.8
arahy.Tifrunner.gnm1.ann1.17W1X2 Arachis hypogaea HOM05D007503 ORTHO05D009487 4.4e-07 57.8 45 68.9
arahy.Tifrunner.gnm1.ann1.CKCH2H Arachis hypogaea HOM05D007503 ORTHO05D009487 4.4e-07 57.8 45 68.9
BcaC02g09481 Brassica carinata HOM05D007503 ORTHO05D009487 5.7e-07 57.4 49 67.3
TPR.G29629 Trifolium pratense HOM05D007503 ORTHO05D009487 5.7e-07 57.4 45 68.9
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 9.7e-07 56.6 51 56.9


User provided reference genes

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