Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g03320 Coffea canephora HOM05D007504 ORTHO05D007629 4.3e-309 1063.9 571 100.0
Rhsim09G0131100 Rhododendron simsii HOM05D007504 ORTHO05D007629 5.6e-59 233.0 579 36.6
Dinv02913 Davidia involucrata HOM05D007504 ORTHO05D007629 3.5e-53 213.8 607 34.9
Nitab4.5_0000276g0060 Nicotiana tabacum HOM05D007504 ORTHO05D007629 1.1e-46 192.2 592 32.6
Nitab4.5_0000456g0090 Nicotiana tabacum HOM05D007504 ORTHO05D007629 4.2e-46 190.3 580 34.3
Solyc04g051280.4 Solanum lycopersicum HOM05D007504 ORTHO05D007629 8.7e-44 182.6 595 34.5
CSS0023929 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 1.6e-42 178.3 564 35.8
Peaxi162Scf00994g00026 Petunia axillaris HOM05D007504 ORTHO05D007629 6.2e-42 176.4 596 30.9
EL10Ac4g09412 Beta vulgaris HOM05D007504 ORTHO05D007629 5.3e-41 173.3 581 31.7
Actinidia38910 Actinidia chinensis HOM05D007504 ORTHO05D007629 1.5e-40 171.8 607 32.0
MD12G1258000 Malus domestica HOM05D007504 ORTHO05D007629 4.5e-40 170.2 612 31.5
PGSC0003DMG400016931 Solanum tuberosum HOM05D007504 ORTHO05D007629 5.8e-40 169.9 574 33.1
CAN.G29.22 Capsicum annuum HOM05D007504 ORTHO05D007629 2.2e-39 167.9 617 32.6
Sc09g0001640 Simmondsia chinensis HOM05D007504 ORTHO05D007629 3.8e-39 167.2 546 32.4
CiPaw.07G074500 Carya illinoinensis HOM05D007504 ORTHO05D007629 1.4e-38 165.2 561 31.7
Hund21875 Selenicereus undatus HOM05D007504 ORTHO05D007629 1.2e-37 162.2 530 31.7
Ah.06g195770 Amaranthus hybridus HOM05D007504 ORTHO05D007629 1.1e-35 155.6 574 28.9
Manes.08G105000 Manihot esculenta HOM05D007504 ORTHO05D007629 4.3e-35 153.7 524 33.2
PGR031G1611 Punica granatum HOM05D007504 ORTHO05D007629 1.3e-34 152.1 554 31.8
FAN14G3522 Fragaria x ananassa HOM05D007504 ORTHO05D007629 1.6e-34 151.8 609 32.0
FvH4_6g00830 Fragaria vesca HOM05D007504 ORTHO05D007629 3.7e-34 150.6 609 32.0
TWI14G0943 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 1.2e-32 145.6 536 31.3
Cfa006286 Carpinus fangiana HOM05D007504 ORTHO05D007629 2.0e-32 144.8 544 30.7
Eucgr.H01377 Eucalyptus grandis HOM05D007504 ORTHO05D007629 2.6e-32 144.4 536 32.8
FAN09G1848 Fragaria x ananassa HOM05D007504 ORTHO05D007629 3.4e-32 144.1 571 32.0
Atru.chr12.1547 Acer truncatum HOM05D007504 ORTHO05D007629 7.6e-32 142.9 636 30.3
TWI59G0549 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 6.5e-31 139.8 541 31.4
Haze_04521 Corylus avellana HOM05D007504 ORTHO05D007629 8.4e-31 139.4 564 30.9
Potri.019G052300 Populus trichocarpa HOM05D007504 ORTHO05D007629 7.1e-30 136.3 540 28.7
Lsat_1_v5_gn_8_3001 Lactuca sativa HOM05D007504 ORTHO05D007629 2.3e-28 131.3 603 28.7
RcHm_v2.0_Chr3g0448301 Rosa chinensis HOM05D007504 ORTHO05D007629 2.3e-28 131.3 553 29.5
Gorai.002G147900 Gossypium raimondii HOM05D007504 ORTHO05D007629 1.1e-27 129.0 661 26.8
Gohir.A13G089900 Gossypium hirsutum HOM05D007504 ORTHO05D007629 1.1e-25 122.5 671 25.8
Gohir.D13G093400 Gossypium hirsutum HOM05D007504 ORTHO05D007629 1.8e-25 121.7 676 26.8
MD04G1241000 Malus domestica HOM05D007504 ORTHO05D007629 2.4e-25 121.3 578 29.9
Aqoxy2G03947 Aquilegia oxysepala HOM05D007504 ORTHO05D007629 4.1e-25 120.6 550 28.7
Lj5g0006161 Lotus japonicus HOM05D007504 ORTHO05D007629 6.9e-25 119.8 625 27.7
Sopen04g022690 Solanum pennellii HOM05D007504 ORTHO05D007629 1.5e-24 118.6 451 33.5
COL.COLO4_06844 Corchorus olitorius HOM05D007504 ORTHO05D007629 2.0e-24 118.2 817 24.5
Ciclev10011923m.g Citrus clementina HOM05D007504 ORTHO05D007629 2.6e-24 117.9 386 30.1
QL01p050434 Quercus lobata HOM05D007504 ORTHO05D007629 2.2e-23 114.8 304 35.9
FAN05G3219 Fragaria x ananassa HOM05D007504 ORTHO05D007629 6.5e-23 113.2 591 27.2
Sabra19G0056400 Salix brachista HOM05D007504 ORTHO05D007629 9.3e-22 109.4 512 27.7
Sc09g0001620 Simmondsia chinensis HOM05D007504 ORTHO05D007629 1.6e-21 108.6 292 36.3
AUR62000366 Chenopodium quinoa HOM05D007504 ORTHO05D007629 5.1e-20 103.6 499 29.7
Ca_09972_v3 Cicer arietinum L. HOM05D007504 ORTHO05D007629 5.1e-20 103.6 631 25.4
AUR62006721 Chenopodium quinoa HOM05D007504 ORTHO05D007629 1.5e-19 102.1 267 35.6
Lj7A601T114 Lonicera japonica HOM05D007504 ORTHO05D007629 2.5e-19 101.3 610 27.4
GSVIVG01019149001 Vitis vinifera HOM05D007504 ORTHO05D007629 2.5e-19 101.3 154 43.5
THA.LOC104823805 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 5.7e-19 100.1 519 28.1
TAR636G2263 Trochodendron aralioides HOM05D007504 ORTHO05D007629 2.8e-18 97.8 128 50.8
MBI07_g00623_MAGBIO Magnolia biondii HOM05D007504 ORTHO05D007629 6.3e-18 96.7 637 26.2
Oeu008540.1 Olea europaea HOM05D007504 ORTHO05D007629 6.3e-18 96.7 93 59.1
QL01p050471 Quercus lobata HOM05D007504 ORTHO05D007629 6.3e-18 96.7 67 68.7
VMungo0720G1881 Vigna mungo HOM05D007504 ORTHO05D007629 6.3e-18 96.7 536 28.0
ClCG01G008930 Citrullus lanatus HOM05D007504 ORTHO05D007629 1.4e-17 95.5 522 26.2
CSS0029071 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 1.8e-17 95.1 71 67.6
Glyma.20G219900 Glycine max HOM05D007504 ORTHO05D007629 1.8e-17 95.1 572 26.4
TPR.G14656 Trifolium pratense HOM05D007504 ORTHO05D007629 1.8e-17 95.1 626 25.2
Thecc.05G204700 Theobroma cacao HOM05D007504 ORTHO05D007629 2.4e-17 94.7 447 28.6
CSS0043883 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 5.3e-17 93.6 388 34.0
CsaV3_1G037800 Cucumis sativus L. HOM05D007504 ORTHO05D007629 5.3e-17 93.6 528 27.5
DCAR_029902 Daucus carota HOM05D007504 ORTHO05D007629 1.2e-16 92.4 678 25.1
Cpa.g.sc123.14 Carica papaya HOM05D007504 ORTHO05D007629 1.5e-16 92.0 75 61.3
Medtr1g078420 Medicago truncatula HOM05D007504 ORTHO05D007629 1.5e-16 92.0 688 24.1
Duzib177G0136 Durio zibethinus HOM05D007504 ORTHO05D007629 2.0e-16 91.7 333 30.6
TAR636G3585 Trochodendron aralioides HOM05D007504 ORTHO05D007629 2.6e-16 91.3 161 38.5
ATR0609G092 Amborella trichopoda HOM05D007504 ORTHO05D007629 4.5e-16 90.5 68 64.7
Sed0012429 Sechium edule HOM05D007504 ORTHO05D007629 2.2e-15 88.2 553 25.9
Lalb_Chr21g0311381 Lupinus albus HOM05D007504 ORTHO05D007629 2.9e-15 87.8 506 25.5
arahy.Tifrunner.gnm1.ann1.V3BTAU Arachis hypogaea HOM05D007504 ORTHO05D007629 1.1e-14 85.9 609 24.6
SEGI_35581 Sequoiadendron giganteum HOM05D007504 ORTHO05D007629 4.2e-14 84.0 67 58.2
arahy.Tifrunner.gnm1.ann1.DN7JE5 Arachis hypogaea HOM05D007504 ORTHO05D007629 9.4e-14 82.8 608 25.7
CDE05G0344 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 2.7e-13 81.3 123 41.5
Psat6g051960 Pisum sativum HOM05D007504 ORTHO05D007629 3.6e-13 80.9 330 26.4
MELO3C021807.2 Cucumis melo HOM05D007504 ORTHO05D007629 6.1e-13 80.1 538 24.9
SHI33673 Sapria himalayana HOM05D007504 ORTHO05D000001 7.9e-13 79.7 122 42.6
ECA233G2160 Erigeron canadensis HOM05D007504 ORTHO05D007629 2.3e-12 78.2 748 24.2
Prupe.6G358500 Prunus persica HOM05D007504 ORTHO05D007629 2.3e-12 78.2 476 27.1
CDE05G2205 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 3.9e-12 77.4 153 39.2
Phvul.010G077946 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 5.1e-12 77.0 101 39.6
HPP92_009958 Vanilla planifolia HOM05D007504 ORTHO05D007629 6.7e-12 76.6 531 25.8
PSO017G3378 Papaver somniferum HOM05D007504 ORTHO05D007629 1.1e-11 75.9 147 41.5
AT5G36100 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 9.7e-11 72.8 105 36.2
Thhalv10005424m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 1.7e-10 72.0 125 33.6
Nn1g08319 Nelumbo nucifera HOM05D007504 ORTHO05D007629 3.7e-10 70.9 51 64.7
Carub.0007s3177 Capsella rubella HOM05D009566 ORTHO05D007629 1.1e-09 69.3 106 36.8
Oeu014606.1 Olea europaea HOM05D007504 ORTHO05D007629 1.4e-09 68.9 76 43.4
SGA_v2.0_scaffold10G05147 Striga asiatica HOM05D007504 ORTHO05D007629 1.8e-09 68.6 507 24.1
Migut.F01885 Erythranthe guttata HOM05D007504 ORTHO05D007629 4.1e-09 67.4 628 25.5
BcaB02g08045 Brassica carinata HOM05D009566 ORTHO05D007629 1.2e-08 65.9 85 41.2
BraA04t16670Z Brassica rapa HOM05D009566 ORTHO05D007629 2.6e-08 64.7 79 40.5
Glyma.10G170100 Glycine max HOM05D007504 ORTHO05D007629 5.9e-08 63.5 61 47.5
C04p43550 Brassica napus HOM05D009566 ORTHO05D007629 1.3e-07 62.4 87 37.9
BolC4t25935H Brassica oleracea HOM05D009566 ORTHO05D007629 1.3e-07 62.4 87 37.9
CARHR216660 Cardamine hirsuta HOM05D009566 ORTHO05D007629 1.3e-07 62.4 69 46.4
Aa31LG2G2280 Aethionema arabicum HOM05D009566 ORTHO05D007629 1.7e-07 62.0 138 30.4
BcaB05g24082 Brassica carinata HOM05D009566 ORTHO05D007629 1.7e-07 62.0 177 30.5
THA.LOC104821804 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 1.7e-07 62.0 235 33.2
AL2G19730 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 2.9e-07 61.2 213 29.6
Cpa.g.sc123.15 Carica papaya HOM05D007504 ORTHO05D007629 3.8e-07 60.8 107 45.8
A04p10080 Brassica napus HOM05D009566 ORTHO05D007629 5.0e-07 60.5 81 39.5
Sp5g19730 Schrenkiella parvula HOM05D009566 ORTHO05D007629 5.0e-07 60.5 205 32.2
Aa31LG9G17880 Aethionema arabicum HOM05D009566 ORTHO05D007629 6.5e-07 60.1 72 45.8
Haze_03334 Corylus avellana HOM05D007504 ORTHO05D007629 6.5e-07 60.1 83 45.8
HanXRQChr05g0156881 Helianthus annuus HOM05D007504 ORTHO05D007629 6.5e-07 60.1 762 21.1
A02p13020 Brassica napus HOM05D009566 ORTHO05D007629 8.5e-07 59.7 222 30.2
CARHR056580 Cardamine hirsuta HOM05D009566 ORTHO05D007629 8.5e-07 59.7 205 32.7
BcaC02g09508 Brassica carinata HOM05D009566 ORTHO05D007629 1.1e-06 59.3 130 32.3
Sp7g06100 Schrenkiella parvula HOM05D009566 ORTHO05D007629 1.1e-06 59.3 69 47.8
AT1G65090 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 1.4e-06 58.9 224 29.9
Os12g0506700 Oryza sativa ssp. japonica HOM05D007504 ORTHO05D007629 1.9e-06 58.5 79 41.8
SalBow6G5451 Salvia bowleyana HOM05D007504 ORTHO05D007629 2.5e-06 58.2 212 29.7
AL7G45070 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 4.2e-06 57.4 71 46.5
C02p21140 Brassica napus HOM05D009566 ORTHO05D007629 5.5e-06 57.0 216 30.6
BraA02t06358Z Brassica rapa HOM05D009566 ORTHO05D007629 5.5e-06 57.0 247 30.4


User provided reference genes

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