Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g03310 Coffea canephora HOM05D008013 ORTHO05D010149 2.9e-39 164.9 88 100.0
Actinidia34775 Actinidia chinensis HOM05D008013 ORTHO05D010149 1.3e-31 139.4 88 80.7
THA.LOC104803516 Tarenaya hassleriana HOM05D008013 ORTHO05D010149 3.8e-31 137.9 88 80.7
Haze_04520 Corylus avellana HOM05D008013 ORTHO05D010149 1.1e-30 136.3 88 80.7
Lj1g0002079 Lotus japonicus HOM05D008013 ORTHO05D010149 1.9e-30 135.6 88 77.3
Thecc.05G204600 Theobroma cacao HOM05D008013 ORTHO05D010149 1.9e-30 135.6 88 77.3
Lalb_Chr19g0126801 Lupinus albus HOM05D008013 ORTHO05D010149 7.1e-30 133.7 88 77.3
MD04G1240900 Malus domestica HOM05D008013 ORTHO05D010149 7.1e-30 133.7 88 78.4
Dinv02912 Davidia involucrata HOM05D008013 ORTHO05D010149 1.2e-29 132.9 88 78.4
MD12G1257800 Malus domestica HOM05D008013 ORTHO05D010149 1.2e-29 132.9 88 79.5
CiPaw.08G117300 Carya illinoinensis HOM05D008013 ORTHO05D010149 1.6e-29 132.5 88 78.4
CSS0003713 Camellia sinensis var. sinensis HOM05D008013 ORTHO05D010149 2.7e-29 131.7 88 77.3
CSS0043393 Camellia sinensis var. sinensis HOM05D008013 ORTHO05D010149 2.7e-29 131.7 88 77.3
GSVIVG01019150001 Vitis vinifera HOM05D008013 ORTHO05D010149 2.7e-29 131.7 88 80.7
Gohir.D08G244400 Gossypium hirsutum HOM05D008013 ORTHO05D010149 1.0e-28 129.8 88 75.0
CsaV3_5G032690 Cucumis sativus L. HOM05D008013 ORTHO05D010149 2.3e-28 128.6 88 75.0
Gohir.A08G224100 Gossypium hirsutum HOM05D008013 ORTHO05D010149 2.3e-28 128.6 88 73.9
Ciclev10013456m.g Citrus clementina HOM05D008013 ORTHO05D010149 5.1e-28 127.5 87 75.9
HanXRQChr11g0333671 Helianthus annuus HOM05D008013 ORTHO05D010149 5.1e-28 127.5 88 71.6
Solyc04g150139.1 Solanum lycopersicum HOM05D008013 ORTHO05D010149 5.1e-28 127.5 85 77.6
Phvul.008G056200 Phaseolus vulgaris HOM05D008013 ORTHO05D010149 6.7e-28 127.1 87 73.6
TPR.G29412 Trifolium pratense HOM05D008013 ORTHO05D010149 6.7e-28 127.1 88 71.6
Manes.09G183801 Manihot esculenta HOM05D008013 ORTHO05D010149 8.7e-28 126.7 88 73.9
Rhsim09G0131000 Rhododendron simsii HOM05D008013 ORTHO05D010149 8.7e-28 126.7 89 74.2
RcHm_v2.0_Chr3g0448311 Rosa chinensis HOM05D008013 ORTHO05D010149 1.1e-27 126.3 88 73.9
Glyma.09G252532 Glycine max HOM05D008013 ORTHO05D010149 1.5e-27 125.9 84 73.8
CAN.G4.29 Capsicum annuum HOM05D008013 ORTHO05D010149 2.5e-27 125.2 85 75.3
Glyma.18G240151 Glycine max HOM05D008013 ORTHO05D010149 3.3e-27 124.8 84 73.8
Oeu001239.1 Olea europaea HOM05D008013 ORTHO05D010149 4.3e-27 124.4 88 75.0
TWI59G0485 Tripterygium wilfordii HOM05D008013 ORTHO05D010149 7.4e-27 123.6 87 72.4
Nn1g08299 Nelumbo nucifera HOM05D008013 ORTHO05D010149 9.6e-27 123.2 88 70.5
Atru.chr12.2150 Acer truncatum HOM05D008013 ORTHO05D010149 4.8e-26 120.9 81 77.8
Sed0019978 Sechium edule HOM05D008013 ORTHO05D010149 1.1e-25 119.8 88 69.3
Migut.F02069 Erythranthe guttata HOM05D008013 ORTHO05D010149 4.0e-25 117.9 88 70.5
FAN05G0262 Fragaria x ananassa HOM05D008013 ORTHO05D010149 5.3e-25 117.5 101 66.3
Hund07321 Selenicereus undatus HOM05D008013 ORTHO05D010149 9.0e-25 116.7 80 77.5
Gohir.D13G159800 Gossypium hirsutum HOM05D008013 ORTHO05D010149 1.2e-24 116.3 81 72.8
Gohir.A13G155000 Gossypium hirsutum HOM05D008013 ORTHO05D010149 3.4e-24 114.8 81 72.8
arahy.Tifrunner.gnm1.ann1.L7M8PN Arachis hypogaea HOM05D008013 ORTHO05D010149 4.5e-24 114.4 77 75.3
Gorai.004G260700 Gossypium raimondii HOM05D008013 ORTHO05D010149 5.8e-24 114.0 81 71.6
Potri.019G051850 Populus trichocarpa HOM05D008013 ORTHO05D010149 1.3e-23 112.8 78 71.8
CANSAT54G1767 Cannabis sativa HOM05D000837 ORTHO05D008386 1.7e-23 112.5 81 67.9
EL10Ac4g09411 Beta vulgaris HOM05D008013 ORTHO05D010149 2.2e-23 112.1 83 71.1
Aa31LG2G20150 Aethionema arabicum HOM05D008013 ORTHO05D010149 2.9e-23 111.7 84 63.1
PGR119G0441 Punica granatum HOM05D000837 ORTHO05D008386 4.9e-23 110.9 81 71.6
Sp7g28270 Schrenkiella parvula HOM05D008013 ORTHO05D010149 4.9e-23 110.9 84 60.7
AL7G21760 Arabidopsis lyrata HOM05D008013 ORTHO05D010149 6.5e-23 110.5 84 61.9
Carub.0007s1021 Capsella rubella HOM05D008013 ORTHO05D010149 6.5e-23 110.5 84 59.5
BcaNung00543 Brassica carinata HOM05D008013 ORTHO05D010149 1.1e-22 109.8 84 60.7
AT4G30390 Arabidopsis thaliana HOM05D008013 ORTHO05D010149 1.9e-22 109.0 84 59.5
C07p57840 Brassica napus HOM05D008013 ORTHO05D010149 1.9e-22 109.0 84 59.5
BolC7t46244H Brassica oleracea HOM05D008013 ORTHO05D010149 1.9e-22 109.0 84 59.5
BraA08t33887Z Brassica rapa HOM05D008013 ORTHO05D010149 2.5e-22 108.6 85 58.8
unitig_736.g22502 Utricularia gibba HOM05D008013 ORTHO05D010149 2.5e-22 108.6 81 71.6
A03p59800 Brassica napus HOM05D008013 ORTHO05D010149 3.2e-22 108.2 84 58.3
BraA03t15033Z Brassica rapa HOM05D008013 ORTHO05D010149 4.2e-22 107.8 84 58.3
A08p19260 Brassica napus HOM05D008013 ORTHO05D010149 5.5e-22 107.5 84 59.5
HanXRQChr05g0156911 Helianthus annuus HOM05D000837 ORTHO05D008386 5.5e-22 107.5 79 72.2
Thhalv10026665m.g Eutrema salsugineum HOM05D008013 ORTHO05D010149 1.2e-21 106.3 84 60.7
Ah.06g195780 Amaranthus hybridus HOM05D008013 ORTHO05D010149 1.6e-21 105.9 85 68.2
SHI02464 Sapria himalayana HOM05D008013 ORTHO05D010149 5.1e-20 100.9 78 65.4
vmacro10397 Vaccinium macrocarpon HOM05D000837 ORTHO05D008386 5.1e-20 100.9 103 58.3
Hund21874 Selenicereus undatus HOM05D008013 ORTHO05D010149 1.1e-19 99.8 68 76.5
ClCG10G008070 Citrullus lanatus HOM05D000837 ORTHO05D008386 2.8e-18 95.1 117 49.6
PSO170G5632 Papaver somniferum HOM05D000837 ORTHO05D008386 4.8e-18 94.4 85 55.3
PSO357G0534 Papaver somniferum HOM05D008013 ORTHO05D010149 4.8e-18 94.4 85 55.3
Sabra19G0056800 Salix brachista HOM05D008013 ORTHO05D010149 3.4e-16 88.2 128 43.0
Pp3c1_15100 Physcomitrium patens HOM05D008013 ORTHO05D010149 5.9e-16 87.4 86 45.3
PGSC0003DMG402023117 Solanum tuberosum HOM05D008013 ORTHO05D010149 1.3e-15 86.3 80 61.2
BcaB03g12645 Brassica carinata HOM05D008013 ORTHO05D010149 7.2e-14 80.5 85 49.4
AagrBONN_evm.TU.Sc2ySwM_228.1824 Anthoceros agrestis HOM05D008013 ORTHO05D010149 3.0e-12 75.1 79 49.4
Sed0019520 Sechium edule HOM05D008013 ORTHO05D010149 7.4e-11 70.5 48 72.9
TAR109G0001 Trochodendron aralioides HOM05D008013 ORTHO05D010149 7.4e-11 70.5 42 85.7
MBI07_g00621_MAGBIO Magnolia biondii HOM05D000837 ORTHO05D008386 1.3e-10 69.7 50 74.0
Sc16g0010260 Simmondsia chinensis HOM05D008013 ORTHO05D010149 1.3e-10 69.7 48 72.9
FAN09G3946 Fragaria x ananassa HOM05D000837 ORTHO05D008386 6.3e-10 67.4 50 70.0
CARHR238290 Cardamine hirsuta HOM05D008013 ORTHO05D010149 1.1e-09 66.6 49 57.1
Mapoly0013s0068 Marchantia polymorpha HOM05D008013 ORTHO05D010149 2.0e-08 62.4 82 40.2
BcaC01g01153 Brassica carinata HOM05D008013 ORTHO05D010149 8.5e-07 57.0 63 42.9
SalBow3G2297 Salvia bowleyana HOM05D000837 ORTHO05D008386 7.2e-06 53.9 36 72.2
SalBow3G2750 Salvia bowleyana HOM05D000837 ORTHO05D008386 7.2e-06 53.9 36 72.2


User provided reference genes

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