Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g03260 Coffea canephora HOM05D007078 ORTHO05D008745 3.4e-133 478.4 256 100.0
Potri.014G137300 Populus trichocarpa HOM05D007078 ORTHO05D008745 1.6e-74 283.5 151 90.7
Gorai.004G084200 Gossypium raimondii HOM05D007078 ORTHO05D008745 6.2e-74 281.6 171 81.3
Ciclev10022169m.g Citrus clementina HOM05D007078 ORTHO05D008745 1.4e-73 280.4 159 86.2
Cfa006079 Carpinus fangiana HOM05D007078 ORTHO05D008745 1.8e-73 280.0 155 87.1
Gohir.D08G078400 Gossypium hirsutum HOM05D007078 ORTHO05D008745 1.8e-73 280.0 158 86.1
Nn3g21178 Nelumbo nucifera HOM05D007078 ORTHO05D008745 1.8e-73 280.0 164 84.1
GSVIVG01011060001 Vitis vinifera HOM05D007078 ORTHO05D008745 3.1e-73 279.3 174 78.2
Dinv11266 Davidia involucrata HOM05D007078 ORTHO05D008745 4.0e-73 278.9 183 77.0
arahy.Tifrunner.gnm1.ann1.9GKU3H Arachis hypogaea HOM05D007078 ORTHO05D008745 6.8e-73 278.1 155 86.5
arahy.Tifrunner.gnm1.ann1.ERKA9X Arachis hypogaea HOM05D007078 ORTHO05D008745 6.8e-73 278.1 155 86.5
Manes.05G071800 Manihot esculenta HOM05D007078 ORTHO05D008745 6.8e-73 278.1 156 86.5
QL12p022959 Quercus lobata HOM05D007078 ORTHO05D008745 2.6e-72 276.2 152 88.2
Eucgr.K03409 Eucalyptus grandis HOM05D007078 ORTHO05D008745 4.4e-72 275.4 250 60.0
CSS0036917 Camellia sinensis var. sinensis HOM05D007078 ORTHO05D008745 5.8e-72 275.0 165 82.4
Atru.chr5.1330 Acer truncatum HOM05D007078 ORTHO05D008745 1.3e-71 273.9 160 83.8
Duzib138G1888 Durio zibethinus HOM05D007078 ORTHO05D008745 1.3e-71 273.9 173 78.6
Hma1.2p1_0628F.1_g191760 Hydrangea macrophylla HOM05D007078 ORTHO05D008745 1.3e-71 273.9 157 86.0
CSS0044942 Camellia sinensis var. sinensis HOM05D007078 ORTHO05D008745 1.7e-71 273.5 165 81.8
CiPaw.07G095800 Carya illinoinensis HOM05D007078 ORTHO05D008745 1.7e-71 273.5 164 82.3
TWI59G1055 Tripterygium wilfordii HOM05D007078 ORTHO05D008745 1.7e-71 273.5 143 90.2
CsaV3_7G028490 Cucumis sativus L. HOM05D007078 ORTHO05D008745 2.2e-71 273.1 157 82.2
Sed0016724 Sechium edule HOM05D007078 ORTHO05D008745 2.2e-71 273.1 155 84.5
MELO3C015872.2 Cucumis melo HOM05D007078 ORTHO05D008745 2.9e-71 272.7 157 83.4
PGR044G0767 Punica granatum HOM05D007078 ORTHO05D008745 2.9e-71 272.7 142 90.8
CANSAT25G2561 Cannabis sativa HOM05D007078 ORTHO05D008745 3.7e-71 272.3 164 82.9
Nitab4.5_0005757g0030 Nicotiana tabacum HOM05D007078 ORTHO05D008745 3.7e-71 272.3 255 61.2
Haze_04771 Corylus avellana HOM05D007078 ORTHO05D008745 6.4e-71 271.6 149 87.9
Glyma.19G152600 Glycine max HOM05D007078 ORTHO05D008745 6.4e-71 271.6 171 78.4
VMungo1383G1152 Vigna mungo HOM05D007078 ORTHO05D008745 6.4e-71 271.6 157 82.2
EL10Ac7g17029 Beta vulgaris HOM05D007078 ORTHO05D008745 1.1e-70 270.8 164 80.5
Aqoxy5G00564 Aquilegia oxysepala HOM05D007078 ORTHO05D008745 3.2e-70 269.2 157 80.9
Cpa.g.sc9.128 Carica papaya HOM05D007078 ORTHO05D008745 5.4e-70 268.5 142 89.4
Phvul.001G147500 Phaseolus vulgaris HOM05D007078 ORTHO05D008745 7.0e-70 268.1 163 77.9
Oeu047893.1 Olea europaea HOM05D007078 ORTHO05D008745 9.2e-70 267.7 143 89.5
Ca_08555_v3 Cicer arietinum L. HOM05D007078 ORTHO05D008745 1.2e-69 267.3 169 76.3
TAR362G1057 Trochodendron aralioides HOM05D007078 ORTHO05D008745 1.2e-69 267.3 156 83.3
unitig_0.g636 Utricularia gibba HOM05D007078 ORTHO05D008745 1.2e-69 267.3 161 82.6
Lj1g0026447 Lotus japonicus HOM05D007078 ORTHO05D008745 1.6e-69 266.9 163 79.8
ATR0626G125 Amborella trichopoda HOM05D007078 ORTHO05D008745 2.1e-69 266.5 160 80.6
Migut.D00250 Erythranthe guttata HOM05D007078 ORTHO05D008745 2.1e-69 266.5 149 83.9
DCAR_018382 Daucus carota HOM05D007078 ORTHO05D008745 2.7e-69 266.2 160 80.0
Nitab4.5_0001436g0040 Nicotiana tabacum HOM05D007078 ORTHO05D008745 3.5e-69 265.8 171 77.2
THA.LOC104823061 Tarenaya hassleriana HOM05D007078 ORTHO05D008745 4.6e-69 265.4 150 84.7
CDE12G0236 Ceratophyllum demersum HOM05D007078 ORTHO05D008745 7.8e-69 264.6 169 78.7
Prupe.8G247900 Prunus persica HOM05D007078 ORTHO05D008745 7.8e-69 264.6 165 78.2
Medtr7g094220 Medicago truncatula HOM05D007078 ORTHO05D008745 1.3e-68 263.8 164 78.7
Lsat_1_v5_gn_9_1840 Lactuca sativa HOM05D007078 ORTHO05D008745 1.7e-68 263.5 149 83.9
HanXRQChr15g0466581 Helianthus annuus HOM05D007078 ORTHO05D008745 2.3e-68 263.1 176 76.1
vmacro02537 Vaccinium macrocarpon HOM05D007078 ORTHO05D008745 3.9e-68 262.3 145 86.2
Psat3g066400 Pisum sativum HOM05D007078 ORTHO05D008745 6.6e-68 261.5 169 76.3
RcHm_v2.0_Chr6g0291981 Rosa chinensis HOM05D007078 ORTHO05D008745 1.1e-67 260.8 168 75.6
MD03G1271700 Malus domestica HOM05D007078 ORTHO05D008745 1.9e-67 260.0 175 76.6
PSO210G6132 Papaver somniferum HOM05D007078 ORTHO05D008745 1.9e-67 260.0 160 78.1
Glyma.03G149600 Glycine max HOM05D007078 ORTHO05D008745 2.5e-67 259.6 164 77.4
Os05g0404400 Oryza sativa ssp. japonica HOM05D007078 ORTHO05D008745 2.5e-67 259.6 144 84.7
TPR.G32805 Trifolium pratense HOM05D007078 ORTHO05D008745 4.3e-67 258.8 169 75.7
FAN27G0292 Fragaria x ananassa HOM05D007078 ORTHO05D008745 5.6e-67 258.5 142 86.6
PSO832G3632 Papaver somniferum HOM05D007078 ORTHO05D008745 5.6e-67 258.5 160 77.5
FvH4_2g24170 Fragaria vesca HOM05D007078 ORTHO05D008745 7.3e-67 258.1 142 86.6
Thecc.01G285900 Theobroma cacao HOM05D007078 ORTHO05D008745 7.3e-67 258.1 156 84.0
Rhsim13G0021200 Rhododendron simsii HOM05D005701 ORTHO05D007058 9.5e-67 257.7 142 84.5
ECA247G1342 Erigeron canadensis HOM05D007078 ORTHO05D008745 1.6e-66 256.9 156 79.5
MD11G1292300 Malus domestica HOM05D007078 ORTHO05D008745 1.6e-66 256.9 150 84.0
Sp4g29960 Schrenkiella parvula HOM05D007078 ORTHO05D008745 2.1e-66 256.5 150 81.3
Solyc05g055850.3 Solanum lycopersicum HOM05D007078 ORTHO05D008745 3.6e-66 255.8 158 79.1
PGR142G0265 Punica granatum HOM05D007078 ORTHO05D008745 4.7e-66 255.4 150 83.3
Sopen05g034250 Solanum pennellii HOM05D007078 ORTHO05D008745 6.2e-66 255.0 156 80.1
PGSC0003DMG400023469 Solanum tuberosum HOM05D007078 ORTHO05D008745 6.2e-66 255.0 172 76.7
Thhalv10001627m.g Eutrema salsugineum HOM05D007078 ORTHO05D008745 8.1e-66 254.6 155 78.7
Sc24g0004060 Simmondsia chinensis HOM05D007078 ORTHO05D008745 8.1e-66 254.6 141 85.8
CARHR143460 Cardamine hirsuta HOM05D007078 ORTHO05D008745 1.1e-65 254.2 151 79.5
Sabra14G0103700 Salix brachista HOM05D007078 ORTHO05D008745 1.1e-65 254.2 140 88.6
Lj1C43T3 Lonicera japonica HOM05D007078 ORTHO05D008745 3.1e-65 252.7 146 82.2
AL4G47660 Arabidopsis lyrata HOM05D007078 ORTHO05D008745 4.0e-65 252.3 157 77.1
AT2G48070 Arabidopsis thaliana HOM05D007078 ORTHO05D008745 7.5e-64 248.1 172 70.9
FAN15G0223 Fragaria x ananassa HOM05D007078 ORTHO05D008745 9.9e-64 247.7 137 85.4
BcaC02g12558 Brassica carinata HOM05D007078 ORTHO05D008745 3.7e-63 245.7 160 73.8
BolSC55t61232H Brassica oleracea HOM05D007078 ORTHO05D008745 3.7e-63 245.7 160 73.8
Carub.0004s3077 Capsella rubella HOM05D007078 ORTHO05D008745 4.9e-63 245.4 142 81.7
BcaB02g08732 Brassica carinata HOM05D007078 ORTHO05D008745 8.3e-63 244.6 142 80.3
A05p00060 Brassica napus HOM05D007078 ORTHO05D008745 1.4e-62 243.8 157 75.2
BraA05t19002Z Brassica rapa HOM05D007078 ORTHO05D008745 1.4e-62 243.8 157 75.2
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 1.9e-62 243.4 136 84.6
Aa31LG1G29480 Aethionema arabicum HOM05D007078 ORTHO05D008745 1.6e-61 240.4 130 88.5
Ah.08g209880 Amaranthus hybridus HOM05D007078 ORTHO05D008745 4.6e-61 238.8 128 89.8
BNapus_Darmor_BZH_scaffold_188p00040 Brassica napus HOM05D007078 ORTHO05D008745 6.0e-61 238.4 153 75.2
FAN24G3201 Fragaria x ananassa HOM05D007078 ORTHO05D008745 1.0e-60 237.7 137 84.7
AagrBONN_evm.TU.Sc2ySwM_117.1018 Anthoceros agrestis HOM05D007078 ORTHO05D008745 1.3e-60 237.3 142 76.1
AUR62026362 Chenopodium quinoa HOM05D007078 ORTHO05D008745 1.7e-60 236.9 129 86.8
Mapoly0037s0112 Marchantia polymorpha HOM05D007078 ORTHO05D008745 2.3e-60 236.5 151 74.2
Lalb_Chr01g0020251 Lupinus albus HOM05D007078 ORTHO05D008745 5.1e-60 235.3 169 67.5
SMO358G0655 Selaginella moellendorffii HOM05D007078 ORTHO05D008745 1.4e-57 227.3 155 67.7
Pp3c24_17730 Physcomitrium patens HOM05D007078 ORTHO05D008745 2.0e-56 223.4 158 67.1
CBR_g32237 Chara braunii HOM05D007078 ORTHO05D008745 4.3e-51 205.7 139 70.5
Oeu006229.1 Olea europaea HOM05D007078 ORTHO05D008745 1.6e-45 187.2 90 95.6
CDE01G0430 Ceratophyllum demersum HOM05D007078 ORTHO05D008745 2.1e-45 186.8 97 89.7
Cre03.g145207 Chlamydomonas reinhardtii HOM05D007078 ORTHO05D008745 6.9e-41 171.8 141 53.9
MCO10G051 Micromonas commoda HOM05D007078 ORTHO05D008745 1.2e-40 171.0 130 60.8
MBI19_g21637_MAGBIO Magnolia biondii HOM05D007078 ORTHO05D008745 5.8e-40 168.7 156 61.5
ClCG09G006760 Citrullus lanatus HOM05D007078 ORTHO05D008745 7.6e-40 168.3 147 59.2
Gohir.A08G070800 Gossypium hirsutum HOM05D007078 ORTHO05D008745 9.3e-38 161.4 107 75.7
SGA_v2.0_scaffold11G05787 Striga asiatica HOM05D007078 ORTHO05D008745 7.9e-37 158.3 135 60.7
Zm00001eb287740 Zea mays HOM05D007078 ORTHO05D008745 7.4e-35 151.8 105 71.4
PRCOL_00000964 Prasinoderma coloniale HOM05D007078 ORTHO05D008745 3.7e-34 149.4 133 56.4
Ca_08589_v3 Cicer arietinum L. HOM05D007078 ORTHO05D008745 6.2e-34 148.7 105 68.6
Actinidia00723 Actinidia chinensis HOM05D007078 ORTHO05D008745 1.1e-33 147.9 74 89.2
HPP92_019174 Vanilla planifolia HOM05D007078 ORTHO05D008745 2.0e-32 143.7 84 77.4
SEGI_07843 Sequoiadendron giganteum HOM05D007078 ORTHO05D008745 4.5e-32 142.5 102 68.6
Peaxi162Scf00156g00061 Petunia axillaris HOM05D007078 ORTHO05D008745 2.5e-30 136.7 72 91.7
PGR142G2005 Punica granatum HOM05D007078 ORTHO05D008745 2.1e-29 133.7 77 85.7
Actinidia24309 Actinidia chinensis HOM05D007078 ORTHO05D008745 2.4e-25 120.2 67 82.1
Hma1.2p1_0628F.1_g191770 Hydrangea macrophylla HOM05D007078 ORTHO05D008745 3.8e-23 112.8 56 91.1


User provided reference genes

Program Settings