Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g03180 Coffea canephora HOM05D002211 ORTHO05D002206 1.1e-105 387.1 265 100.0
MSTRG.9225 Avicennia marina HOM05D002211 ORTHO05D002206 8.7e-23 111.7 269 34.6
MSTRG.8176 Avicennia marina HOM05D002211 ORTHO05D002206 1.8e-20 104.0 259 33.2
Migut.F02065 Erythranthe guttata HOM05D002211 ORTHO05D002206 1.2e-19 101.3 272 33.5
Psat0s3509g0040 Pisum sativum HOM05D002211 ORTHO05D002206 2.6e-19 100.1 254 33.9
CiPaw.07G075600 Carya illinoinensis HOM05D002211 ORTHO05D002206 3.4e-19 99.8 259 34.4
Glyma.19G250900 Glycine max HOM05D002211 ORTHO05D002206 2.2e-18 97.1 264 36.0
Phvul.006G108100 Phaseolus vulgaris HOM05D002211 ORTHO05D002206 2.2e-18 97.1 260 35.0
Dinv10852 Davidia involucrata HOM05D002211 ORTHO05D002206 3.8e-18 96.3 258 31.4
FvH4_6g01210 Fragaria vesca HOM05D002211 ORTHO05D002206 5.0e-18 95.9 259 33.2
FAN05G1779 Fragaria x ananassa HOM05D002211 ORTHO05D002206 6.5e-18 95.5 259 33.6
FAN05G2499 Fragaria x ananassa HOM05D002211 ORTHO05D002206 6.5e-18 95.5 259 33.6
Oeu001241.1 Olea europaea HOM05D002211 ORTHO05D002206 8.5e-18 95.1 258 32.2
COL.COLO4_20545 Corchorus olitorius HOM05D002211 ORTHO05D002206 1.4e-17 94.4 265 34.3
RcHm_v2.0_Chr3g0448791 Rosa chinensis HOM05D002211 ORTHO05D002206 1.4e-17 94.4 259 34.0
VMungo0540G2450 Vigna mungo HOM05D002211 ORTHO05D002206 1.9e-17 94.0 257 33.9
Ca_09451_v3 Cicer arietinum L. HOM05D002211 ORTHO05D002206 3.2e-17 93.2 256 32.0
Haze_04489 Corylus avellana HOM05D002211 ORTHO05D002206 4.2e-17 92.8 259 33.6
SalBow1G6037 Salvia bowleyana HOM05D002211 ORTHO05D002206 7.2e-17 92.0 261 31.0
Duzib177G1183 Durio zibethinus HOM05D002211 ORTHO05D002206 2.7e-16 90.1 264 33.3
TPR.G4687 Trifolium pratense HOM05D002211 ORTHO05D002206 2.7e-16 90.1 258 33.3
CANSAT54G2545 Cannabis sativa HOM05D002211 ORTHO05D002206 7.9e-16 88.6 259 32.8
Medtr7g116610 Medicago truncatula HOM05D002211 ORTHO05D002206 7.9e-16 88.6 259 32.4
FAN02G1834 Fragaria x ananassa HOM05D002211 ORTHO05D002206 1.0e-15 88.2 260 31.9
Thecc.05G260900 Theobroma cacao HOM05D002211 ORTHO05D002206 1.0e-15 88.2 259 37.1
Cpa.g.sc51.66 Carica papaya HOM05D002211 ORTHO05D002206 2.3e-15 87.0 256 31.6
GSVIVG01026373001 Vitis vinifera HOM05D002211 ORTHO05D002206 2.3e-15 87.0 259 32.0
Duzib106G0223 Durio zibethinus HOM05D002211 ORTHO05D002206 3.0e-15 86.7 256 32.4
Glyma.03G253400 Glycine max HOM05D002211 ORTHO05D002206 3.0e-15 86.7 253 31.6
Nitab4.5_0004201g0020 Nicotiana tabacum HOM05D002211 ORTHO05D002206 3.9e-15 86.3 261 28.7
Potri.019G029600 Populus trichocarpa HOM05D002211 ORTHO05D002206 3.9e-15 86.3 260 33.8
Potri.013G052600 Populus trichocarpa HOM05D002211 ORTHO05D002206 5.1e-15 85.9 264 32.2
EL10Ac4g09798 Beta vulgaris HOM05D002211 ORTHO05D002206 1.1e-14 84.7 256 31.6
Ciclev10022368m.g Citrus clementina HOM05D002211 ORTHO05D002206 1.1e-14 84.7 268 33.6
Psat0s3038g0080 Pisum sativum HOM05D002211 ORTHO05D002206 3.3e-14 83.2 254 29.9
SGA_v2.0_scaffold13G06340 Striga asiatica HOM05D002211 ORTHO05D002206 3.3e-14 83.2 265 26.8
Eucgr.B02173 Eucalyptus grandis HOM05D002211 ORTHO05D002206 4.3e-14 82.8 282 30.1
Actinidia34770 Actinidia chinensis HOM05D002211 ORTHO05D002206 5.7e-14 82.4 259 36.3
Duzib128G1915 Durio zibethinus HOM05D002211 ORTHO05D002206 5.7e-14 82.4 265 30.6
Lalb_Chr04g0261851 Lupinus albus HOM05D002211 ORTHO05D002206 5.7e-14 82.4 263 30.8
Aqoxy5G00107 Aquilegia oxysepala HOM05D002211 ORTHO05D002206 1.3e-13 81.3 263 30.4
Gohir.D11G250800 Gossypium hirsutum HOM05D002211 ORTHO05D002206 1.3e-13 81.3 258 33.3
TWI60G0660 Tripterygium wilfordii HOM05D002211 ORTHO05D002206 2.2e-13 80.5 259 31.3
Gohir.A11G241500 Gossypium hirsutum HOM05D002211 ORTHO05D002206 3.7e-13 79.7 257 31.5
TAR362G0774 Trochodendron aralioides HOM05D002211 ORTHO05D002206 3.7e-13 79.7 261 30.3
arahy.Tifrunner.gnm1.ann1.ML5U0X Arachis hypogaea HOM05D002211 ORTHO05D002206 4.8e-13 79.3 258 36.8
MD04G1235700 Malus domestica HOM05D002211 ORTHO05D002206 4.8e-13 79.3 259 34.0
MD12G1253400 Malus domestica HOM05D002211 ORTHO05D002206 4.8e-13 79.3 259 33.6
Peaxi162Scf00071g00139 Petunia axillaris HOM05D002211 ORTHO05D002206 4.8e-13 79.3 260 30.4
CsaV3_2G010180 Cucumis sativus L. HOM05D002211 ORTHO05D002206 6.3e-13 79.0 260 29.6
FvH4_6g01200 Fragaria vesca HOM05D001040 ORTHO05D002795 6.3e-13 79.0 249 30.9
Psat3g005480 Pisum sativum HOM05D002211 ORTHO05D002206 8.2e-13 78.6 76 57.9
FAN05G1484 Fragaria x ananassa HOM05D002211 ORTHO05D002206 1.1e-12 78.2 249 31.3
Manes.09G144900 Manihot esculenta HOM05D002211 ORTHO05D002206 1.1e-12 78.2 254 28.7
Psat3g005600 Pisum sativum HOM05D002211 ORTHO05D002206 1.1e-12 78.2 251 30.3
MELO3C008671.2 Cucumis melo HOM05D002211 ORTHO05D002206 1.4e-12 77.8 266 30.5
PGR142G0339 Punica granatum HOM05D002211 ORTHO05D002206 1.4e-12 77.8 262 30.9
Atru.chr2.1234 Acer truncatum HOM05D002211 ORTHO05D002206 3.1e-12 76.6 153 38.6
QL01p047517 Quercus lobata HOM05D002211 ORTHO05D002206 5.3e-12 75.9 241 39.4
Sabra19G0036300 Salix brachista HOM05D002211 ORTHO05D002206 9.1e-12 75.1 82 53.7
Sabra19G0039400 Salix brachista HOM05D002211 ORTHO05D002206 9.1e-12 75.1 82 53.7
TWI32G0781 Tripterygium wilfordii HOM05D002211 ORTHO05D002206 2.0e-11 73.9 259 30.9
Gorai.013G118400 Gossypium raimondii HOM05D002211 ORTHO05D002206 2.6e-11 73.6 108 41.7
Gohir.D13G105700 Gossypium hirsutum HOM05D002211 ORTHO05D002206 3.4e-11 73.2 109 41.3
Potri.015G040500 Populus trichocarpa HOM05D002211 ORTHO05D002206 4.5e-11 72.8 89 48.3
Gorai.007G268900 Gossypium raimondii HOM05D002211 ORTHO05D002206 7.7e-11 72.0 91 50.5
Hund07149 Selenicereus undatus HOM05D002211 ORTHO05D002206 1.0e-10 71.6 266 32.0
ClCG11G010190 Citrullus lanatus HOM05D002211 ORTHO05D002206 1.3e-10 71.2 253 30.4
Gorai.013G198900 Gossypium raimondii HOM05D002211 ORTHO05D002206 1.3e-10 71.2 45 68.9
Gorai.011G084500 Gossypium raimondii HOM05D002211 ORTHO05D002206 1.7e-10 70.9 45 68.9
THA.LOC104820745 Tarenaya hassleriana HOM05D002211 ORTHO05D002206 1.7e-10 70.9 47 63.8
Sabra13G0047200 Salix brachista HOM05D002211 ORTHO05D002206 2.2e-10 70.5 247 31.2
FvH4_2g17840 Fragaria vesca HOM05D002211 ORTHO05D002206 2.9e-10 70.1 259 29.0
RcHm_v2.0_Chr6g0282871 Rosa chinensis HOM05D002211 ORTHO05D002206 2.9e-10 70.1 256 28.9
FAN09G3091 Fragaria x ananassa HOM05D002211 ORTHO05D002206 3.8e-10 69.7 88 46.6
Manes.08G147100 Manihot esculenta HOM05D002211 ORTHO05D002206 3.8e-10 69.7 248 30.2
Gohir.D08G053500 Gossypium hirsutum HOM05D002211 ORTHO05D002206 5.0e-10 69.3 45 66.7
Gohir.D10G077733 Gossypium hirsutum HOM05D002211 ORTHO05D002206 5.0e-10 69.3 45 66.7
Prupe.6G355600 Prunus persica HOM05D002211 ORTHO05D002206 5.0e-10 69.3 275 29.8
Ciclev10017076m.g Citrus clementina HOM05D002211 ORTHO05D002206 6.5e-10 68.9 264 27.3
FAN24G0249 Fragaria x ananassa HOM05D002211 ORTHO05D002206 6.5e-10 68.9 259 29.3
Gohir.A13G102400 Gossypium hirsutum HOM05D002211 ORTHO05D002206 6.5e-10 68.9 109 39.4
Gohir.D10G077875 Gossypium hirsutum HOM05D002211 ORTHO05D002206 6.5e-10 68.9 45 66.7
TAR365G0725 Trochodendron aralioides HOM05D002211 ORTHO05D002206 8.5e-10 68.6 251 29.1
Lj1g0002409 Lotus japonicus HOM05D002211 ORTHO05D002206 1.4e-09 67.8 33 87.9
SalBow1G4707 Salvia bowleyana HOM05D002211 ORTHO05D002206 1.4e-09 67.8 36 77.8
Eucgr.H04158 Eucalyptus grandis HOM05D002211 ORTHO05D002206 1.9e-09 67.4 258 29.8
Nn1g08275 Nelumbo nucifera HOM05D002211 ORTHO05D002206 1.9e-09 67.4 256 28.1
THA.LOC104827277 Tarenaya hassleriana HOM05D002211 ORTHO05D002206 1.9e-09 67.4 48 58.3
DCAR_005529 Daucus carota HOM05D002211 ORTHO05D002206 3.2e-09 66.6 41 75.6
Rhsim09G0131800 Rhododendron simsii HOM05D002211 ORTHO05D002206 3.2e-09 66.6 43 69.8
Solyc04g050790.3 Solanum lycopersicum HOM05D002211 ORTHO05D002206 3.2e-09 66.6 46 71.7
Sopen04g021740 Solanum pennellii HOM05D002211 ORTHO05D002206 3.2e-09 66.6 46 71.7
PGSC0003DMG400004509 Solanum tuberosum HOM05D002211 ORTHO05D002206 3.2e-09 66.6 46 71.7
vmacro10391 Vaccinium macrocarpon HOM05D002211 ORTHO05D002206 4.2e-09 66.2 43 72.1
BcaB08g36688 Brassica carinata HOM05D002211 ORTHO05D002206 5.5e-09 65.9 34 79.4
A10p21210 Brassica napus HOM05D002211 ORTHO05D002206 5.5e-09 65.9 34 79.4
C09p58640 Brassica napus HOM05D002211 ORTHO05D002206 5.5e-09 65.9 34 79.4
BolC9t58706H Brassica oleracea HOM05D002211 ORTHO05D002206 5.5e-09 65.9 34 79.4
BraA10t44184Z Brassica rapa HOM05D002211 ORTHO05D002206 5.5e-09 65.9 34 79.4
Duzib138G0235 Durio zibethinus HOM05D002211 ORTHO05D002206 5.5e-09 65.9 255 26.7
Nitab4.5_0000504g0030 Nicotiana tabacum HOM05D002211 ORTHO05D002206 5.5e-09 65.9 46 63.0
Actinidia38919 Actinidia chinensis HOM05D002211 ORTHO05D002206 1.2e-08 64.7 35 77.1
MBI07_g44687_MAGBIO Magnolia biondii HOM05D002211 ORTHO05D002206 1.2e-08 64.7 261 26.1
AL6G29540 Arabidopsis lyrata HOM05D002211 ORTHO05D002206 1.6e-08 64.3 34 76.5
Manes.12G053700 Manihot esculenta HOM05D002211 ORTHO05D002206 2.1e-08 63.9 260 26.9
BraA02t05441Z Brassica rapa HOM05D002211 ORTHO05D002206 2.7e-08 63.5 34 76.5
Thecc.01G211400 Theobroma cacao HOM05D002211 ORTHO05D002206 3.6e-08 63.2 255 26.7
Lalb_Chr02g0149321 Lupinus albus HOM05D002211 ORTHO05D002206 4.7e-08 62.8 258 28.7
Psat3g004920 Pisum sativum HOM05D002211 ORTHO05D002206 4.7e-08 62.8 31 87.1
Sp6g26000 Schrenkiella parvula HOM05D002211 ORTHO05D002206 6.1e-08 62.4 254 28.7
Sc06g0005240 Simmondsia chinensis HOM05D002211 ORTHO05D002206 6.1e-08 62.4 49 59.2
Thhalv10014852m.g Eutrema salsugineum HOM05D002211 ORTHO05D002206 7.9e-08 62.0 256 28.1
Actinidia30019 Actinidia chinensis HOM05D002211 ORTHO05D002206 1.0e-07 61.6 256 27.3
CDE05G0436 Ceratophyllum demersum HOM05D002211 ORTHO05D002206 1.0e-07 61.6 258 25.6
A02p04820 Brassica napus HOM05D002211 ORTHO05D002206 1.4e-07 61.2 34 70.6
C02p09800 Brassica napus HOM05D002211 ORTHO05D002206 1.4e-07 61.2 256 28.1
TAR365G1226 Trochodendron aralioides HOM05D002211 ORTHO05D002206 1.4e-07 61.2 253 28.5
BolC2t06888H Brassica oleracea HOM05D002211 ORTHO05D002206 1.8e-07 60.8 256 27.3
unitig_46.g18575 Utricularia gibba HOM05D002211 ORTHO05D002206 1.8e-07 60.8 34 73.5
ATR0686G227 Amborella trichopoda HOM05D002211 ORTHO05D002206 2.3e-07 60.5 36 72.2
Nn5g27522 Nelumbo nucifera HOM05D002211 ORTHO05D002206 3.0e-07 60.1 259 24.7
TAR636G2930 Trochodendron aralioides HOM05D002211 ORTHO05D002206 3.0e-07 60.1 33 78.8
Ah.02g111170 Amaranthus hybridus HOM05D002211 ORTHO05D002206 3.9e-07 59.7 38 71.1
TWI36G0467 Tripterygium wilfordii HOM05D002211 ORTHO05D002206 3.9e-07 59.7 257 28.4
Glyma.20G220500 Glycine max HOM05D002211 ORTHO05D002206 5.1e-07 59.3 32 84.4
COL.COLO4_38590 Corchorus olitorius HOM05D002211 ORTHO05D002206 6.7e-07 58.9 255 24.7
Carub.0006s1659 Capsella rubella HOM05D002211 ORTHO05D002206 8.8e-07 58.5 30 80.0
Dinv10434 Davidia involucrata HOM05D002211 ORTHO05D002206 8.8e-07 58.5 256 27.7
MBI07_g09899_MAGBIO Magnolia biondii HOM05D002211 ORTHO05D002206 8.8e-07 58.5 39 69.2
TAR633G0017 Trochodendron aralioides HOM05D002211 ORTHO05D002206 8.8e-07 58.5 41 68.3
MBI07_g35241_MAGBIO Magnolia biondii HOM05D002211 ORTHO05D002206 1.1e-06 58.2 250 25.2
PSO170G3935 Papaver somniferum HOM05D002211 ORTHO05D002206 1.1e-06 58.2 33 75.8
Glyma.18G152300 Glycine max HOM05D002211 ORTHO05D002206 2.0e-06 57.4 258 25.6
Phvul.010G031300 Phaseolus vulgaris HOM05D002211 ORTHO05D002206 2.0e-06 57.4 265 25.3
Potri.002G250800 Populus trichocarpa HOM05D002211 ORTHO05D002206 2.0e-06 57.4 262 26.7
CARHR194750 Cardamine hirsuta HOM05D002211 ORTHO05D002206 2.6e-06 57.0 30 76.7
PSO357G0293 Papaver somniferum HOM05D002211 ORTHO05D002206 2.6e-06 57.0 268 31.3
HPP92_021397 Vanilla planifolia HOM05D002211 ORTHO05D002206 2.6e-06 57.0 42 57.1
VMungo1383G1511 Vigna mungo HOM05D002211 ORTHO05D002206 2.6e-06 57.0 256 25.0
arahy.Tifrunner.gnm1.ann1.TRRB3R Arachis hypogaea HOM05D002211 ORTHO05D002206 3.3e-06 56.6 34 76.5
EL10Ac5g10628 Beta vulgaris HOM05D002211 ORTHO05D002206 3.3e-06 56.6 36 72.2
unitig_37.g12278 Utricularia gibba HOM05D002211 ORTHO05D002206 3.3e-06 56.6 32 71.9
VMungo0331G1849 Vigna mungo HOM05D002211 ORTHO05D002206 3.3e-06 56.6 265 26.0
MD05G1159900 Malus domestica HOM05D002211 ORTHO05D002206 4.4e-06 56.2 39 66.7
Hund09466 Selenicereus undatus HOM05D002211 ORTHO05D002206 4.4e-06 56.2 251 25.5
MSTRG.17972 Avicennia marina HOM05D002211 ORTHO05D002206 5.7e-06 55.8 266 27.1
Aqoxy5G00111 Aquilegia oxysepala HOM05D002211 ORTHO05D002206 7.4e-06 55.5 263 26.2
MSTRG.18492 Avicennia marina HOM05D002211 ORTHO05D002206 7.4e-06 55.5 72 47.2
Dinv28814 Davidia involucrata HOM05D002211 ORTHO05D002206 7.4e-06 55.5 258 27.9
Phvul.L001850 Phaseolus vulgaris HOM05D002211 ORTHO05D002206 7.4e-06 55.5 32 75.0
Sed0010531 Sechium edule HOM05D002211 ORTHO05D002206 7.4e-06 55.5 243 28.4
Cpa.g.sc8.75 Carica papaya HOM05D002211 ORTHO05D002206 9.7e-06 55.1 36 66.7
CDE05G1888 Ceratophyllum demersum HOM05D002211 ORTHO05D002206 9.7e-06 55.1 258 25.2
Haze_23452 Corylus avellana HOM05D002211 ORTHO05D002206 9.7e-06 55.1 39 66.7
Gohir.A11G142300 Gossypium hirsutum HOM05D002211 ORTHO05D002206 9.7e-06 55.1 251 25.1
Manes.13G054300 Manihot esculenta HOM05D002211 ORTHO05D002206 9.7e-06 55.1 262 24.4
HPP92_024641 Vanilla planifolia HOM05D002211 ORTHO05D002206 9.7e-06 55.1 36 61.1


User provided reference genes

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