Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g03150 Coffea canephora HOM05D006063 ORTHO05D000023 0.0e+00 1471.8 766 100.0
CSS0004581 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 6.7e-132 475.7 661 45.5
vmacro10365 Vaccinium macrocarpon HOM05D006063 ORTHO05D000023 1.5e-128 464.5 616 46.4
PGSC0003DMG400015112 Solanum tuberosum HOM05D006063 ORTHO05D000023 4.2e-126 456.4 633 46.4
CAN.G4.18 Capsicum annuum HOM05D006063 ORTHO05D000023 5.1e-124 449.5 618 45.6
Nitab4.5_0000504g0070 Nicotiana tabacum HOM05D006063 ORTHO05D000023 1.6e-122 444.5 616 46.6
Sopen04g021710 Solanum pennellii HOM05D006063 ORTHO05D000023 1.6e-122 444.5 633 45.7
Actinidia34754 Actinidia chinensis HOM05D006063 ORTHO05D000023 1.8e-121 441.0 609 44.8
Rhsim09G0137100 Rhododendron simsii HOM05D006063 ORTHO05D000023 1.8e-121 441.0 655 44.3
Solyc04g050760.4 Solanum lycopersicum HOM05D006063 ORTHO05D000023 5.8e-120 436.0 620 45.3
MSTRG.9222 Avicennia marina HOM05D006063 ORTHO05D000023 9.3e-118 428.7 621 42.7
Migut.F02045 Erythranthe guttata HOM05D006063 ORTHO05D000023 3.9e-116 423.3 620 42.9
Manes.09G145100 Manihot esculenta HOM05D006063 ORTHO05D000023 3.9e-116 423.3 618 43.4
Sabra19G0036100 Salix brachista HOM05D006063 ORTHO05D000023 1.5e-115 421.4 609 43.7
Sabra19G0039200 Salix brachista HOM05D006063 ORTHO05D000023 7.4e-115 419.1 609 43.5
CANSAT54G1152 Cannabis sativa HOM05D006063 ORTHO05D000023 4.1e-113 413.3 618 41.7
Nitab4.5_0004201g0010 Nicotiana tabacum HOM05D006063 ORTHO05D000023 1.0e-111 408.7 641 43.7
Peaxi162Scf00071g01413 Petunia axillaris HOM05D006063 ORTHO05D000023 2.9e-111 407.1 516 49.4
Potri.019G029400 Populus trichocarpa HOM05D006063 ORTHO05D000023 5.0e-111 406.4 606 44.4
Lsat_1_v5_gn_9_46040 Lactuca sativa HOM05D006063 ORTHO05D000023 9.4e-110 402.1 612 42.5
SalBow1G1068 Salvia bowleyana HOM05D006063 ORTHO05D000023 1.2e-109 401.7 627 42.1
Prupe.6G355400 Prunus persica HOM05D006063 ORTHO05D000023 6.1e-109 399.4 624 43.1
TWI34G0066 Tripterygium wilfordii HOM05D006063 ORTHO05D000023 7.9e-109 399.1 625 41.9
Cpa.g.sc51.61 Carica papaya HOM05D006063 ORTHO05D000023 2.5e-107 394.0 522 44.1
MELO3C010119.2 Cucumis melo HOM05D006063 ORTHO05D000023 4.3e-107 393.3 631 41.5
SalBow1G3325 Salvia bowleyana HOM05D006063 ORTHO05D000023 5.7e-107 392.9 618 41.4
Hund07147 Selenicereus undatus HOM05D006063 ORTHO05D000023 4.8e-106 389.8 618 40.6
SGA_v2.0_scaffold62G21476 Striga asiatica HOM05D006063 ORTHO05D000023 4.8e-106 389.8 605 42.5
MD04G1235500 Malus domestica HOM05D006063 ORTHO05D000023 2.4e-105 387.5 619 41.4
EL10Ac4g09796 Beta vulgaris HOM05D006063 ORTHO05D000023 1.2e-104 385.2 629 41.5
Sed0026121 Sechium edule HOM05D006063 ORTHO05D000023 1.2e-104 385.2 633 41.1
Gorai.013G118800 Gossypium raimondii HOM05D006063 ORTHO05D000023 2.0e-104 384.4 602 41.9
CsaV3_1G044890 Cucumis sativus L. HOM05D006063 ORTHO05D000023 1.3e-103 381.7 613 41.8
Gohir.D13G106000 Gossypium hirsutum HOM05D006063 ORTHO05D000023 1.3e-103 381.7 602 41.7
FvH4_6g01260 Fragaria vesca HOM05D006063 ORTHO05D000023 1.7e-103 381.3 616 43.3
FAN02G3689 Fragaria x ananassa HOM05D006063 ORTHO05D000023 2.2e-103 380.9 618 42.7
Ciclev10019009m.g Citrus clementina HOM05D006063 ORTHO05D000023 1.4e-102 378.3 629 40.5
TAR362G1155 Trochodendron aralioides HOM05D006063 ORTHO05D000023 1.2e-101 375.2 645 41.4
FAN05G0856 Fragaria x ananassa HOM05D006063 ORTHO05D000023 2.1e-101 374.4 620 42.4
Sc16g0010060 Simmondsia chinensis HOM05D006063 ORTHO05D000023 2.7e-101 374.0 619 41.7
FAN09G4822 Fragaria x ananassa HOM05D006063 ORTHO05D000023 4.7e-101 373.2 617 42.6
Thecc.05G261400 Theobroma cacao HOM05D006063 ORTHO05D000023 1.4e-100 371.7 627 40.4
HanXRQChr15g0491401 Helianthus annuus HOM05D006063 ORTHO05D000023 2.0e-99 367.9 597 42.5
Aqoxy2G04022 Aquilegia oxysepala HOM05D006063 ORTHO05D000023 2.6e-99 367.5 634 39.9
ClCG03G011330 Citrullus lanatus HOM05D006063 ORTHO05D000023 2.6e-99 367.5 690 38.6
Oeu010183.1 Olea europaea HOM05D006063 ORTHO05D000023 3.7e-98 363.6 472 46.8
Eucgr.H04160 Eucalyptus grandis HOM05D006063 ORTHO05D000023 5.5e-94 349.7 634 39.7
Lj2A50T27 Lonicera japonica HOM05D006063 ORTHO05D000023 2.7e-93 347.4 394 49.0
AUR62005299 Chenopodium quinoa HOM05D006063 ORTHO05D000765 3.6e-93 347.1 531 42.2
Carub.0003s0342 Capsella rubella HOM05D006063 ORTHO05D000023 6.3e-90 336.3 611 38.8
AL3G14090 Arabidopsis lyrata HOM05D006063 ORTHO05D000023 1.2e-88 332.0 594 38.9
Sp3g03130 Schrenkiella parvula HOM05D006063 ORTHO05D000023 1.6e-88 331.6 636 39.0
AT3G04160 Arabidopsis thaliana HOM05D006063 ORTHO05D000023 7.7e-88 329.3 607 38.6
CARHR078300 Cardamine hirsuta HOM05D006063 ORTHO05D000023 1.3e-87 328.6 635 37.6
Dinv03784 Davidia involucrata HOM05D006063 ORTHO05D000023 1.7e-87 328.2 447 43.2
PSO063G1700 Papaver somniferum HOM05D006063 ORTHO05D000023 1.1e-86 325.5 635 37.0
THA.LOC104820746 Tarenaya hassleriana HOM05D006063 ORTHO05D000023 1.5e-86 325.1 668 37.3
Lalb_Chr21g0311331 Lupinus albus HOM05D006063 ORTHO05D000023 2.1e-85 321.2 651 36.3
Thhalv10020148m.g Eutrema salsugineum HOM05D006063 ORTHO05D000023 3.6e-85 320.5 623 38.7
VMungo0720G1344 Vigna mungo HOM05D006063 ORTHO05D000023 2.6e-83 314.3 610 37.5
Glyma.10G169000 Glycine max HOM05D006063 ORTHO05D000023 3.4e-83 313.9 609 36.6
PSO017G2613 Papaver somniferum HOM05D006063 ORTHO05D000023 3.4e-83 313.9 638 36.1
Aa31LG5G14700 Aethionema arabicum HOM05D006063 ORTHO05D000023 4.8e-82 310.1 612 36.9
arahy.Tifrunner.gnm1.ann1.2N7XA4 Arachis hypogaea HOM05D006063 ORTHO05D000023 1.1e-81 308.9 618 37.4
BcaB04g19349 Brassica carinata HOM05D006063 ORTHO05D000023 1.8e-81 308.1 610 37.4
CSS0046279 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 1.2e-80 305.4 434 43.8
CiPaw.07G075500 Carya illinoinensis HOM05D006063 ORTHO05D000023 3.5e-80 303.9 494 41.7
arahy.Tifrunner.gnm1.ann1.JVQ2Z4 Arachis hypogaea HOM05D006063 ORTHO05D000023 4.5e-80 303.5 613 36.9
A03p33520 Brassica napus HOM05D006063 ORTHO05D000023 5.9e-80 303.1 564 38.1
BraA03t12527Z Brassica rapa HOM05D006063 ORTHO05D000023 2.2e-79 301.2 564 38.1
MBI07_g04744_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 5.0e-79 300.1 622 37.8
Phvul.L001648 Phaseolus vulgaris HOM05D006063 ORTHO05D000023 5.0e-79 300.1 604 36.1
BolC3t16339H Brassica oleracea HOM05D006063 ORTHO05D000023 3.2e-78 297.4 584 38.2
C03p40730 Brassica napus HOM05D006063 ORTHO05D000023 4.2e-78 297.0 600 37.8
Lj3g0014127 Lotus japonicus HOM05D006063 ORTHO05D000023 5.5e-78 296.6 601 36.8
BcaC01g04385 Brassica carinata HOM05D006063 ORTHO05D000023 1.6e-77 295.0 535 38.5
Hma1.2p1_0153F.1_g067880 Hydrangea macrophylla HOM05D006063 ORTHO05D000023 3.6e-77 293.9 432 43.5
SHI14775 Sapria himalayana HOM05D006063 ORTHO05D000023 3.6e-77 293.9 484 38.0
ATR0618G015 Amborella trichopoda HOM05D006063 ORTHO05D000023 1.8e-76 291.6 673 35.8
FAN05G5389 Fragaria x ananassa HOM05D006063 ORTHO05D000023 3.0e-76 290.8 436 43.6
Medtr1g079470 Medicago truncatula HOM05D006063 ORTHO05D000023 7.5e-75 286.2 602 36.5
Ca_09979_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 3.7e-74 283.9 607 35.7
Ca_09995_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 3.7e-74 283.9 607 35.7
Gohir.A13G102800 Gossypium hirsutum HOM05D006063 ORTHO05D000023 4.9e-66 256.9 386 43.3
MBI18_g19284_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 2.0e-64 251.5 456 39.7
RcHm_v2.0_Chr3g0448821 Rosa chinensis HOM05D006063 ORTHO05D000023 1.1e-57 229.2 376 41.8
QL07p027196 Quercus lobata HOM05D006063 ORTHO05D000023 1.2e-56 225.7 683 31.5
ECA232G4499 Erigeron canadensis HOM05D006063 ORTHO05D000023 6.6e-55 219.9 402 39.3
Haze_04487 Corylus avellana HOM05D006063 ORTHO05D000023 1.9e-54 218.4 601 31.4
Atru.chr2.1232 Acer truncatum HOM05D006063 ORTHO05D000023 2.5e-54 218.0 348 39.9
Zm00001eb086400 Zea mays HOM05D006063 ORTHO05D000023 5.8e-51 206.8 480 33.5
AagrBONN_evm.TU.Sc2ySwM_362.520 Anthoceros agrestis HOM05D006063 ORTHO05D000023 1.7e-50 205.3 552 30.1
Mapoly0001s0430 Marchantia polymorpha HOM05D006063 ORTHO05D000023 4.0e-44 184.1 587 29.0
SMO351G0027 Selaginella moellendorffii HOM05D006063 ORTHO05D000023 6.8e-44 183.3 566 28.6
Pp3c17_4760 Physcomitrium patens HOM05D006063 ORTHO05D000023 1.2e-43 182.6 527 28.8
TPR.G10281 Trifolium pratense HOM05D006063 ORTHO05D000023 1.5e-43 182.2 361 35.5
MBI18_g46979_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 5.4e-41 173.7 404 35.1
Os04g0349401 Oryza sativa ssp. japonica HOM05D006063 ORTHO05D000023 1.2e-40 172.6 385 34.8
GSVIVG01026370001 Vitis vinifera HOM05D006063 ORTHO05D000023 3.5e-40 171.0 227 45.8
A05p43190 Brassica napus HOM05D006063 ORTHO05D000023 1.9e-38 165.2 383 33.9
COL.COLO4_20542 Corchorus olitorius HOM05D006063 ORTHO05D000023 7.3e-38 163.3 264 43.9
FvH4_5g38930 Fragaria vesca HOM05D006063 ORTHO05D000023 2.8e-37 161.4 248 44.8
Psat6g141160 Pisum sativum HOM05D006063 ORTHO05D000023 5.8e-35 153.7 367 34.1
HPP92_006232 Vanilla planifolia HOM05D006063 ORTHO05D000023 7.1e-33 146.7 243 40.3
CDE05G2869 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 7.8e-32 143.3 216 40.7
HPP92_006233 Vanilla planifolia HOM05D006063 ORTHO05D000023 1.3e-29 136.0 234 40.6
DCAR_005531 Daucus carota HOM05D006063 ORTHO05D000023 1.5e-27 129.0 290 32.1
CDE05G3203 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 5.8e-27 127.1 247 38.5
Atru.chr2.1231 Acer truncatum HOM05D006063 ORTHO05D000023 1.1e-25 122.9 128 53.1
CsaV3_1G044530 Cucumis sativus L. HOM05D006063 ORTHO05D000023 1.1e-22 112.8 210 41.9
A05p43200 Brassica napus HOM05D000005 ORTHO05D000449 1.7e-18 99.0 137 46.7
SEGI_40887 Sequoiadendron giganteum HOM05D006063 ORTHO05D000023 2.9e-18 98.2 217 34.6
RcHm_v2.0_Chr3g0448831 Rosa chinensis HOM05D006063 ORTHO05D000023 3.5e-16 91.3 154 40.9
BraA05t23062Z Brassica rapa HOM05D006063 ORTHO05D000023 5.1e-15 87.4 127 41.7
Cpa.g.sc51.65 Carica papaya HOM05D006063 ORTHO05D000023 3.7e-13 81.3 153 34.0
MBI18_g46978_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 1.4e-09 69.3 186 34.9
BcaC05g30213 Brassica carinata HOM05D006063 ORTHO05D000023 3.5e-08 64.7 48 68.8
Dinv03782 Davidia involucrata HOM05D006063 ORTHO05D045148 4.6e-08 64.3 37 83.8
unitig_46.g17983 Utricularia gibba HOM05D006063 ORTHO05D000023 6.0e-08 63.9 146 34.9
Cpa.g.sc51.64 Carica papaya HOM05D006063 ORTHO05D000023 3.0e-07 61.6 106 40.6
C05p62930 Brassica napus HOM05D000005 ORTHO05D000294 3.3e-06 58.2 123 35.8


User provided reference genes

Program Settings