Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g03030 Coffea canephora HOM05D000780 ORTHO05D009033 4.2e-57 224.6 120 100.0
Dinv01155 Davidia involucrata HOM05D000780 ORTHO05D009033 2.7e-40 168.7 119 74.8
Nn1g03021 Nelumbo nucifera HOM05D000780 ORTHO05D009033 4.7e-40 167.9 120 75.8
Ciclev10021307m.g Citrus clementina HOM05D000780 ORTHO05D009033 1.4e-39 166.4 120 73.3
Atru.chr2.1117 Acer truncatum HOM05D000780 ORTHO05D009033 1.8e-39 166.0 120 75.8
MSTRG.27431 Avicennia marina HOM05D000780 ORTHO05D009033 2.3e-39 165.6 120 75.0
Hma1.2p1_0130F.1_g060510 Hydrangea macrophylla HOM05D000780 ORTHO05D009033 2.3e-39 165.6 120 72.5
Actinidia06831 Actinidia chinensis HOM05D000780 ORTHO05D009033 3.9e-39 164.9 120 74.2
CSS0005756 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 2.0e-38 162.5 120 70.8
Nitab4.5_0003148g0030 Nicotiana tabacum HOM05D000780 ORTHO05D009033 2.0e-38 162.5 120 70.8
QL01p042200 Quercus lobata HOM05D000780 ORTHO05D009033 2.6e-38 162.2 118 72.0
Manes.09G146600 Manihot esculenta HOM05D000780 ORTHO05D009033 3.3e-38 161.8 120 73.3
Cpa.g.c33516 Carica papaya HOM05D000780 ORTHO05D009033 5.7e-38 161.0 110 76.4
Rhsim05G0170400 Rhododendron simsii HOM05D000780 ORTHO05D009033 9.7e-38 160.2 120 70.8
Peaxi162Scf00077g00138 Petunia axillaris HOM05D000780 ORTHO05D009033 1.3e-37 159.8 120 74.2
Migut.F02052 Erythranthe guttata HOM05D000780 ORTHO05D009033 1.7e-37 159.5 120 71.7
MBI10_g26046_MAGBIO Magnolia biondii HOM05D000780 ORTHO05D009033 2.2e-37 159.1 119 70.6
TWI34G1716 Tripterygium wilfordii HOM05D000780 ORTHO05D009033 2.2e-37 159.1 120 67.5
GSVIVG01026324001 Vitis vinifera HOM05D000780 ORTHO05D009033 2.2e-37 159.1 120 70.8
Potri.019G023700 Populus trichocarpa HOM05D000780 ORTHO05D009033 2.8e-37 158.7 120 70.8
Sabra19G0033700 Salix brachista HOM05D000780 ORTHO05D009033 4.8e-37 157.9 120 70.0
Phvul.L002032 Phaseolus vulgaris HOM05D000780 ORTHO05D009033 6.3e-37 157.5 118 70.3
SGA_v2.0_scaffold329G48830 Striga asiatica HOM05D002740 ORTHO05D003126 6.3e-37 157.5 117 70.9
PGR004G1412 Punica granatum HOM05D000780 ORTHO05D009033 1.1e-36 156.8 120 72.5
Thecc.05G266300 Theobroma cacao HOM05D000780 ORTHO05D009033 1.1e-36 156.8 120 69.2
Glyma.20G221500 Glycine max HOM05D000780 ORTHO05D009033 1.4e-36 156.4 118 67.8
MD12G1251900 Malus domestica HOM05D000780 ORTHO05D009033 1.4e-36 156.4 116 74.1
DCAR_030971 Daucus carota HOM05D000780 ORTHO05D009033 1.8e-36 156.0 120 70.0
RcHm_v2.0_Chr3g0449091 Rosa chinensis HOM05D000780 ORTHO05D009033 1.8e-36 156.0 121 69.4
Haze_04472 Corylus avellana HOM05D000780 ORTHO05D009033 2.4e-36 155.6 118 72.0
Lj2A46G68 Lonicera japonica HOM05D000780 ORTHO05D009033 2.4e-36 155.6 121 71.9
VMungo0720G1285 Vigna mungo HOM05D000780 ORTHO05D009033 2.4e-36 155.6 118 70.3
FvH4_6g01461 Fragaria vesca HOM05D000780 ORTHO05D009033 3.1e-36 155.2 121 69.4
CANSAT54G0520 Cannabis sativa HOM05D000780 ORTHO05D009033 4.1e-36 154.8 120 69.2
FAN14G3828 Fragaria x ananassa HOM05D000780 ORTHO05D001132 7.0e-36 154.1 119 67.2
FAN14G4937 Fragaria x ananassa HOM05D000780 ORTHO05D001132 7.0e-36 154.1 119 67.2
vmacro19978 Vaccinium macrocarpon HOM05D000780 ORTHO05D009033 7.0e-36 154.1 120 70.0
Gohir.D13G172200 Gossypium hirsutum HOM05D000780 ORTHO05D009033 1.5e-35 152.9 116 69.8
Gorai.013G188500 Gossypium raimondii HOM05D000780 ORTHO05D009033 1.5e-35 152.9 116 69.8
SalBow1G6873 Salvia bowleyana HOM05D000780 ORTHO05D009033 2.6e-35 152.1 120 67.5
Aqoxy5G00106 Aquilegia oxysepala HOM05D000780 ORTHO05D009033 3.5e-35 151.8 120 69.2
FAN05G0905 Fragaria x ananassa HOM05D000780 ORTHO05D001132 3.5e-35 151.8 119 66.4
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 5.9e-35 151.0 108 73.1
ClCG03G011490 Citrullus lanatus HOM05D000780 ORTHO05D009033 7.7e-35 150.6 120 69.2
FAN02G1432 Fragaria x ananassa HOM05D000780 ORTHO05D009033 1.0e-34 150.2 121 66.9
Gohir.A13G161800 Gossypium hirsutum HOM05D000780 ORTHO05D009033 1.0e-34 150.2 120 67.5
Sc24g0002520 Simmondsia chinensis HOM05D000780 ORTHO05D009033 1.0e-34 150.2 120 67.5
arahy.Tifrunner.gnm1.ann1.ZAXM00 Arachis hypogaea HOM05D000780 ORTHO05D009033 1.7e-34 149.4 118 67.8
arahy.Tifrunner.gnm1.ann1.09X96J Arachis hypogaea HOM05D000780 ORTHO05D009033 2.2e-34 149.1 118 67.8
Carub.0007s3248 Capsella rubella HOM05D000780 ORTHO05D009033 2.9e-34 148.7 119 65.5
Eucgr.H04210 Eucalyptus grandis HOM05D000780 ORTHO05D009033 2.9e-34 148.7 119 68.1
FAN09G0636 Fragaria x ananassa HOM05D000780 ORTHO05D001132 2.9e-34 148.7 114 67.5
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 3.8e-34 148.3 120 68.3
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 3.8e-34 148.3 116 68.1
Thhalv10027857m.g Eutrema salsugineum HOM05D000780 ORTHO05D009033 3.8e-34 148.3 120 65.8
THA.LOC104821566 Tarenaya hassleriana HOM05D000780 ORTHO05D009033 3.8e-34 148.3 116 67.2
Ca_09986_v3 Cicer arietinum L. HOM05D000780 ORTHO05D009033 5.0e-34 147.9 120 63.3
PGSC0003DMG402028709 Solanum tuberosum HOM05D000780 ORTHO05D009033 5.0e-34 147.9 120 67.5
AUR62006989 Chenopodium quinoa HOM05D000780 ORTHO05D009033 6.5e-34 147.5 120 68.3
TPR.G10273 Trifolium pratense HOM05D000780 ORTHO05D009033 6.5e-34 147.5 120 65.0
Lalb_Chr21g0311301 Lupinus albus HOM05D000780 ORTHO05D009033 8.5e-34 147.1 120 65.0
Nitab4.5_0000841g0080 Nicotiana tabacum HOM05D000780 ORTHO05D009033 8.5e-34 147.1 120 67.5
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 8.5e-34 147.1 120 63.3
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 8.5e-34 147.1 118 67.8
Ah.06g187930 Amaranthus hybridus HOM05D000780 ORTHO05D009033 1.1e-33 146.7 119 65.5
EL10Ac4g09771 Beta vulgaris HOM05D000780 ORTHO05D009033 1.1e-33 146.7 118 67.8
CARHR215730 Cardamine hirsuta HOM05D000780 ORTHO05D009033 1.4e-33 146.4 120 64.2
Lj5g0019051 Lotus japonicus HOM05D000780 ORTHO05D009033 1.4e-33 146.4 120 64.2
PSO210G3904 Papaver somniferum HOM05D000780 ORTHO05D009033 1.9e-33 146.0 120 66.7
TAR633G0111 Trochodendron aralioides HOM05D000780 ORTHO05D009033 1.9e-33 146.0 117 68.4
Hund07171 Selenicereus undatus HOM05D000780 ORTHO05D009033 3.2e-33 145.2 120 65.8
SEGI_05244 Sequoiadendron giganteum HOM05D000780 ORTHO05D009033 5.5e-33 144.4 120 64.2
Sopen04g021250 Solanum pennellii HOM05D000780 ORTHO05D009033 5.5e-33 144.4 120 66.7
AT5G37360 Arabidopsis thaliana HOM05D000780 ORTHO05D009033 7.2e-33 144.1 120 63.3
Solyc04g050470.4 Solanum lycopersicum HOM05D000780 ORTHO05D009033 7.2e-33 144.1 119 66.4
CsaV3_1G045040 Cucumis sativus L. HOM05D000780 ORTHO05D009033 9.4e-33 143.7 118 67.8
AL7G45990 Arabidopsis lyrata HOM05D000780 ORTHO05D009033 2.1e-32 142.5 120 63.3
Sp7g05110 Schrenkiella parvula HOM05D000780 ORTHO05D009033 2.7e-32 142.1 120 63.3
ATR0088G058 Amborella trichopoda HOM05D000780 ORTHO05D009033 3.6e-32 141.7 119 67.2
HPP92_009057 Vanilla planifolia HOM05D000780 ORTHO05D009033 4.7e-32 141.4 117 65.8
BraA04t16719Z Brassica rapa HOM05D000780 ORTHO05D009033 1.0e-31 140.2 118 63.6
Lsat_1_v5_gn_9_46781 Lactuca sativa HOM05D000780 ORTHO05D009033 1.0e-31 140.2 119 63.9
Medtr1g079763 Medicago truncatula HOM05D000780 ORTHO05D009033 1.0e-31 140.2 120 60.8
BcaC02g09559 Brassica carinata HOM05D000780 ORTHO05D009033 3.0e-31 138.7 118 62.7
BolC4t25992H Brassica oleracea HOM05D000780 ORTHO05D009033 3.0e-31 138.7 118 62.7
C04p44170 Brassica napus HOM05D000780 ORTHO05D009033 3.9e-31 138.3 118 62.7
Sed0013634 Sechium edule HOM05D000780 ORTHO05D009033 3.9e-31 138.3 140 59.3
unitig_37.g12284 Utricularia gibba HOM05D000780 ORTHO05D009033 5.2e-31 137.9 114 66.7
ECA232G3479 Erigeron canadensis HOM05D000780 ORTHO05D009033 4.4e-30 134.8 116 61.2
Aa31LG9G18020 Aethionema arabicum HOM05D000780 ORTHO05D009033 5.7e-30 134.4 120 60.8
SalBow1G5981 Salvia bowleyana HOM05D000780 ORTHO05D009033 5.7e-30 134.4 150 54.7
A04p10530 Brassica napus HOM05D000780 ORTHO05D009033 2.8e-29 132.1 119 61.3
HanXRQChr05g0145151 Helianthus annuus HOM05D000780 ORTHO05D009033 8.2e-29 130.6 120 58.3
Prupe.6G353000 Prunus persica HOM05D000780 ORTHO05D009033 1.8e-28 129.4 93 75.3
Eucgr.H04100 Eucalyptus grandis HOM05D000780 ORTHO05D009033 1.0e-26 123.6 120 61.7
Os02g0815400 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D009033 1.5e-25 119.8 119 56.3
Glyma.10G167600 Glycine max HOM05D000780 ORTHO05D009033 1.2e-24 116.7 140 52.9
Potri.013G050300 Populus trichocarpa HOM05D000780 ORTHO05D009033 1.4e-23 113.2 98 62.2
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 3.0e-23 112.1 83 67.5
MELO3C010086.2 Cucumis melo HOM05D000780 ORTHO05D009033 2.8e-21 105.5 86 66.3
Zm00001eb258750 Zea mays HOM05D000780 ORTHO05D009033 3.7e-21 105.1 119 48.7
AagrBONN_evm.TU.Sc2ySwM_228.3981 Anthoceros agrestis HOM05D000780 ORTHO05D009033 2.4e-20 102.4 96 58.3
SMO172G0144 Selaginella moellendorffii HOM05D000780 ORTHO05D009033 5.0e-18 94.7 70 65.7
Pp3c18_1300 Physcomitrium patens HOM05D000780 ORTHO05D009033 4.2e-17 91.7 87 54.0
CBR_g11120 Chara braunii HOM05D000780 ORTHO05D009033 1.4e-12 76.6 94 43.6
FAN14G1321 Fragaria x ananassa HOM05D000780 ORTHO05D009033 2.3e-10 69.3 117 41.9
CSS0024577 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 8.6e-10 67.4 53 62.3
CiPaw.07G074400 Carya illinoinensis HOM05D000780 ORTHO05D009033 2.5e-09 65.9 53 64.2
FvH4_3g18300 Fragaria vesca HOM05D000780 ORTHO05D196851 3.6e-08 62.0 46 63.0
FAN11G0130 Fragaria x ananassa HOM05D000780 ORTHO05D009033 3.6e-08 62.0 46 63.0


User provided reference genes

Program Settings