Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g03000 Coffea canephora HOM05D005427 ORTHO05D006461 1.3e-85 319.7 158 100.0
TAR628G1492 Trochodendron aralioides HOM05D001631 ORTHO05D001591 4.5e-35 151.8 137 56.9
Dinv36993 Davidia involucrata HOM05D005427 ORTHO05D006461 2.3e-34 149.4 134 55.2
CiPaw.08G147100 Carya illinoinensis HOM05D005427 ORTHO05D006461 3.8e-34 148.7 137 54.0
Atru.chr3.1127 Acer truncatum HOM05D005427 ORTHO05D006461 8.6e-34 147.5 130 57.7
Atru.chr3.1136 Acer truncatum HOM05D005427 ORTHO05D006461 8.6e-34 147.5 130 57.7
Migut.F01758 Erythranthe guttata HOM05D005427 ORTHO05D006461 9.5e-33 144.1 134 53.7
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 1.2e-32 143.7 137 53.3
QL06p037683 Quercus lobata HOM05D005427 ORTHO05D006461 6.1e-32 141.4 137 53.3
GSVIVG01017423001 Vitis vinifera HOM05D005427 ORTHO05D006461 6.1e-32 141.4 139 51.8
Dinv21205 Davidia involucrata HOM05D005427 ORTHO05D006461 1.4e-31 140.2 119 56.3
RcHm_v2.0_Chr2g0109701 Rosa chinensis HOM05D005427 ORTHO05D006461 1.8e-31 139.8 136 53.7
RcHm_v2.0_Chr5g0054161 Rosa chinensis HOM05D005427 ORTHO05D006461 2.3e-31 139.4 136 53.7
Ciclev10026408m.g Citrus clementina HOM05D005427 ORTHO05D006461 5.2e-31 138.3 130 56.2
CSS0026502 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 8.9e-31 137.5 134 54.5
PGR102G2470 Punica granatum HOM05D005427 ORTHO05D006461 1.2e-30 137.1 136 52.2
Prupe.6G211100 Prunus persica HOM05D005427 ORTHO05D006461 2.0e-30 136.3 134 50.0
TWI74G0676 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 2.0e-30 136.3 137 53.3
FAN23G0196 Fragaria x ananassa HOM05D005427 ORTHO05D006461 4.4e-30 135.2 136 52.9
Gorai.007G232600 Gossypium raimondii HOM05D005427 ORTHO05D006461 4.4e-30 135.2 137 50.4
CSS0032221 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 7.5e-30 134.4 134 51.5
FAN27G1155 Fragaria x ananassa HOM05D005427 ORTHO05D006461 7.5e-30 134.4 136 52.2
ECA233G5189 Erigeron canadensis HOM05D005427 ORTHO05D006461 9.8e-30 134.0 134 50.7
Gohir.D11G216500 Gossypium hirsutum HOM05D005427 ORTHO05D006461 9.8e-30 134.0 137 49.6
Thecc.01G082100 Theobroma cacao HOM05D005427 ORTHO05D006461 1.7e-29 133.3 130 52.3
COL.COLO4_11665 Corchorus olitorius HOM05D005427 ORTHO05D006461 2.2e-29 132.9 142 50.7
Nn1g05775 Nelumbo nucifera HOM05D005427 ORTHO05D006461 2.2e-29 132.9 137 49.6
Aqoxy3G03178 Aquilegia oxysepala HOM05D005427 ORTHO05D006461 2.9e-29 132.5 134 48.5
Manes.13G105100 Manihot esculenta HOM05D005427 ORTHO05D006461 3.7e-29 132.1 139 54.0
CSS0024088 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 6.4e-29 131.3 134 50.7
FvH4_1g18830 Fragaria vesca HOM05D005427 ORTHO05D006461 6.4e-29 131.3 134 50.7
HanXRQChr12g0368771 Helianthus annuus HOM05D005427 ORTHO05D006461 2.4e-28 129.4 134 50.0
Carub.0005s1599 Capsella rubella HOM05D005427 ORTHO05D006461 3.2e-28 129.0 136 50.0
Gohir.A11G206966 Gossypium hirsutum HOM05D005427 ORTHO05D006461 1.6e-27 126.7 156 46.2
Lalb_Chr04g0263231 Lupinus albus HOM05D005427 ORTHO05D006461 1.6e-27 126.7 137 49.6
AT3G49645 Arabidopsis thaliana HOM05D005427 ORTHO05D006461 2.0e-27 126.3 135 51.9
Eucgr.H02348 Eucalyptus grandis HOM05D005427 ORTHO05D006461 2.0e-27 126.3 137 47.4
Rhsim07G0122400 Rhododendron simsii HOM05D005427 ORTHO05D006461 2.7e-27 125.9 144 49.3
AL7G47510 Arabidopsis lyrata HOM05D005427 ORTHO05D006461 3.5e-27 125.6 135 50.4
Sopen09g003480 Solanum pennellii HOM05D005427 ORTHO05D006461 3.5e-27 125.6 140 51.4
Potri.017G091300 Populus trichocarpa HOM05D005427 ORTHO05D006461 4.6e-27 125.2 134 53.7
Solyc09g008680.4 Solanum lycopersicum HOM05D005427 ORTHO05D006461 4.6e-27 125.2 142 50.7
Lsat_1_v5_gn_8_18901 Lactuca sativa HOM05D005427 ORTHO05D006461 5.9e-27 124.8 134 49.3
SGA_v2.0_scaffold70G23436 Striga asiatica HOM05D005427 ORTHO05D006461 5.9e-27 124.8 131 50.4
Thhalv10019696m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 1.7e-26 123.2 137 50.4
BcaC01g02424 Brassica carinata HOM05D005427 ORTHO05D006461 2.3e-26 122.9 135 46.7
C03p65440 Brassica napus HOM05D005427 ORTHO05D006461 2.3e-26 122.9 135 46.7
BolC3t18796H Brassica oleracea HOM05D005427 ORTHO05D006461 2.3e-26 122.9 135 46.7
Nitab4.5_0004281g0090 Nicotiana tabacum HOM05D005427 ORTHO05D006461 2.3e-26 122.9 132 48.5
FAN26G2664 Fragaria x ananassa HOM05D005427 ORTHO05D006461 3.0e-26 122.5 139 51.1
A06p28350 Brassica napus HOM05D005427 ORTHO05D006461 3.9e-26 122.1 135 46.7
BraA06t25777Z Brassica rapa HOM05D005427 ORTHO05D006461 3.9e-26 122.1 135 46.7
CAN.G1830.8 Capsicum annuum HOM05D005427 ORTHO05D006461 3.9e-26 122.1 138 51.4
Thhalv10010700m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 6.6e-26 121.3 137 48.9
FAN19G1732 Fragaria x ananassa HOM05D005427 ORTHO05D006461 6.6e-26 121.3 153 45.8
PGSC0003DMG400012980 Solanum tuberosum HOM05D005427 ORTHO05D006461 6.6e-26 121.3 138 49.3
Aa31LG4G18120 Aethionema arabicum HOM05D005427 ORTHO05D006461 1.5e-25 120.2 165 46.7
BraA07t29893Z Brassica rapa HOM05D005427 ORTHO05D006461 1.9e-25 119.8 135 45.2
ClCG09G016510 Citrullus lanatus HOM05D005427 ORTHO05D006461 2.5e-25 119.4 135 45.9
THA.LOC104819282 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 3.3e-25 119.0 136 44.9
BcaB01g00686 Brassica carinata HOM05D005427 ORTHO05D006461 5.6e-25 118.2 137 47.4
A07p22100 Brassica napus HOM05D005427 ORTHO05D006461 5.6e-25 118.2 135 44.4
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 5.6e-25 118.2 134 50.0
CARHR158680 Cardamine hirsuta HOM05D005427 ORTHO05D006461 7.3e-25 117.9 140 48.6
vmacro05473 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 1.6e-24 116.7 124 50.8
vmacro07282 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 2.1e-24 116.3 134 45.5
TAR376G0349 Trochodendron aralioides HOM05D005427 ORTHO05D006461 3.6e-24 115.5 134 47.0
Phvul.003G285200 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 6.2e-24 114.8 138 47.1
Cpa.g.sc3.369 Carica papaya HOM05D005427 ORTHO05D006461 1.4e-23 113.6 130 44.6
CsaV3_7G007450 Cucumis sativus L. HOM05D005427 ORTHO05D006461 1.8e-23 113.2 135 42.2
Sp5g12450 Schrenkiella parvula HOM05D005427 ORTHO05D006461 2.3e-23 112.8 137 44.5
AUR62041740 Chenopodium quinoa HOM05D005427 ORTHO05D006461 4.0e-23 112.1 136 47.1
Glyma.08G273000 Glycine max HOM05D005427 ORTHO05D006461 4.0e-23 112.1 144 46.5
VMungo1309G2225 Vigna mungo HOM05D005427 ORTHO05D006461 4.0e-23 112.1 139 47.5
Peaxi162Scf00500g00116 Petunia axillaris HOM05D005427 ORTHO05D006461 5.2e-23 111.7 132 47.7
Phvul.003G285800 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 6.8e-23 111.3 138 47.1
AL5G29490 Arabidopsis lyrata HOM05D007023 ORTHO05D008684 8.9e-23 110.9 121 54.5
BcaC07g39428 Brassica carinata HOM05D005427 ORTHO05D006461 8.9e-23 110.9 137 43.1
Phvul.002G065300 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 8.9e-23 110.9 138 47.1
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 1.2e-22 110.5 138 42.0
Sed0018601 Sechium edule HOM05D005427 ORTHO05D006461 1.5e-22 110.2 130 44.6
CSS0003252 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 2.0e-22 109.8 76 68.4
SGA_v2.0_scaffold147G36350 Striga asiatica HOM05D005427 ORTHO05D006461 4.4e-22 108.6 131 48.1
Cfa001616 Carpinus fangiana HOM05D005427 ORTHO05D006461 5.8e-22 108.2 137 42.3
SGA_v2.0_scaffold4G02171 Striga asiatica HOM05D005427 ORTHO05D006461 1.3e-21 107.1 131 48.9
THA.LOC104799739 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 1.3e-21 107.1 142 40.8
Peaxi162Scf01051g00142 Petunia axillaris HOM05D005427 ORTHO05D006461 2.2e-21 106.3 126 44.4
Sc06g0009050 Simmondsia chinensis HOM05D005427 ORTHO05D006461 2.9e-21 105.9 134 45.5
MELO3C018556.2 Cucumis melo HOM05D005427 ORTHO05D006461 4.9e-21 105.1 139 40.3
Lj3g0020172 Lotus japonicus HOM05D005427 ORTHO05D006461 1.1e-20 104.0 146 42.5
Rhsim10G0082400 Rhododendron simsii HOM05D005427 ORTHO05D006461 1.4e-20 103.6 107 49.5
Ah.01g003640 Amaranthus hybridus HOM05D000109 ORTHO05D000520 2.4e-20 102.8 133 46.6
EL10Ac9g20957 Beta vulgaris HOM05D005427 ORTHO05D006461 2.4e-20 102.8 137 45.3
Carub.0005s0959 Capsella rubella HOM05D005427 ORTHO05D006461 2.4e-20 102.8 119 49.6
TPR.G15264 Trifolium pratense HOM05D005427 ORTHO05D006461 2.4e-20 102.8 153 39.9
Ah.01g015840 Amaranthus hybridus HOM05D005427 ORTHO05D006461 1.6e-19 100.1 137 44.5
Psat4g120800 Pisum sativum HOM05D005427 ORTHO05D006461 1.6e-19 100.1 156 40.4
CANSAT01G2304 Cannabis sativa HOM05D005427 ORTHO05D006461 2.0e-19 99.8 117 48.7
Hund15020 Selenicereus undatus HOM05D005427 ORTHO05D006461 2.7e-19 99.4 136 41.9
BraA06t24896Z Brassica rapa HOM05D007023 ORTHO05D008684 4.6e-19 98.6 122 45.1
AUR62024067 Chenopodium quinoa HOM05D005427 ORTHO05D006461 6.0e-19 98.2 124 46.8
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 1.3e-18 97.1 141 41.8
Glyma.20G162400 Glycine max HOM05D005427 ORTHO05D006461 1.3e-18 97.1 126 46.0
HPP92_024834 Vanilla planifolia HOM05D005427 ORTHO05D006461 1.7e-18 96.7 138 37.7
HPP92_026626 Vanilla planifolia HOM05D005427 ORTHO05D006461 1.7e-18 96.7 138 37.7
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 2.3e-18 96.3 141 41.8
AUR62012052 Chenopodium quinoa HOM05D005427 ORTHO05D006461 3.0e-18 95.9 132 43.9
Zm00001eb210960 Zea mays HOM05D005427 ORTHO05D006461 3.0e-18 95.9 141 34.0
BcaB02g09598 Brassica carinata HOM05D005427 ORTHO05D006461 3.9e-18 95.5 119 40.3
PSO761G0697 Papaver somniferum HOM05D005427 ORTHO05D006461 6.6e-18 94.7 138 37.7
MD00G1139600 Malus domestica HOM05D005427 ORTHO05D006461 1.5e-17 93.6 56 78.6
MD04G1240700 Malus domestica HOM05D005427 ORTHO05D006461 1.5e-17 93.6 56 78.6
Hund13132 Selenicereus undatus HOM05D005427 ORTHO05D006461 1.5e-17 93.6 128 39.8
Hund00873 Selenicereus undatus HOM05D005427 ORTHO05D006461 1.9e-17 93.2 135 37.0
C08p24660 Brassica napus HOM05D007023 ORTHO05D008684 1.2e-16 90.5 123 42.3
BolC8t50081H Brassica oleracea HOM05D007023 ORTHO05D008684 1.2e-16 90.5 123 42.3
AUR62019836 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.6e-16 90.1 124 41.1
MBI16_g26727_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 3.6e-16 89.0 63 63.5
PSO210G5957 Papaver somniferum HOM05D005427 ORTHO05D006461 4.7e-16 88.6 127 40.2
Actinidia11934 Actinidia chinensis HOM05D005427 ORTHO05D006461 1.4e-15 87.0 117 41.9
Os07g0264900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 1.4e-15 87.0 135 35.6
A06p18060 Brassica napus HOM05D007023 ORTHO05D008684 2.3e-15 86.3 107 43.9
Os10g0360900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 4.0e-15 85.5 135 37.0
Medtr8g067265 Medicago truncatula HOM05D005427 ORTHO05D006461 1.2e-14 84.0 153 36.6
Duzib264G0001 Durio zibethinus HOM05D005427 ORTHO05D006461 3.4e-14 82.4 97 46.4
SEGI_00262 Sequoiadendron giganteum HOM05D005427 ORTHO05D006461 5.8e-14 81.6 98 42.9
AagrBONN_evm.TU.Sc2ySwM_344.3300 Anthoceros agrestis HOM05D005427 ORTHO05D006461 8.3e-13 77.8 128 34.4
AagrBONN_evm.TU.Sc2ySwM_228.2937 Anthoceros agrestis HOM05D005427 ORTHO05D006461 1.4e-12 77.0 126 33.3
SMO367G1008 Selaginella moellendorffii HOM05D005427 ORTHO05D006461 5.4e-12 75.1 109 37.6
Zm00001eb064010 Zea mays HOM05D005427 ORTHO05D006461 7.1e-12 74.7 56 53.6
MD01G1046300 Malus domestica HOM05D005427 ORTHO05D006461 9.2e-12 74.3 99 41.4
Pp3c24_9930 Physcomitrium patens HOM05D005427 ORTHO05D006461 8.6e-10 67.8 139 30.2
Haze_16903 Corylus avellana HOM05D005427 ORTHO05D006461 1.1e-09 67.4 124 33.1
Mapoly0002s0147 Marchantia polymorpha HOM05D005427 ORTHO05D006461 1.9e-09 66.6 63 47.6
CBR_g36746 Chara braunii HOM05D005427 ORTHO05D006461 5.2e-07 58.5 74 39.2
Mapoly0085s0034 Marchantia polymorpha HOM05D005427 ORTHO05D006461 2.6e-06 56.2 122 27.0


User provided reference genes

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