Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 4.5e-211 737.6 366 100.0
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 6.2e-160 567.8 367 77.9
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 7.6e-142 507.7 366 68.6
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 1.3e-141 506.9 366 68.6
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 3.2e-140 502.3 366 69.4
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 3.2e-140 502.3 371 66.6
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 1.2e-139 500.4 375 67.2
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 2.7e-139 499.2 370 66.5
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 4.6e-139 498.4 370 68.1
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 7.8e-139 497.7 370 66.8
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 3.9e-138 495.4 366 67.5
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 8.6e-138 494.2 370 65.4
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 1.1e-137 493.8 374 67.9
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 1.6e-136 490.0 370 65.4
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 6.2e-136 488.0 369 65.0
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 3.1e-135 485.7 369 63.7
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 8.9e-135 484.2 370 66.2
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 2.0e-134 483.0 370 64.3
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 2.6e-134 482.6 372 65.1
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 7.6e-134 481.1 370 64.3
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 9.9e-134 480.7 371 63.6
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 2.9e-133 479.2 370 63.5
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 2.9e-133 479.2 370 64.9
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 2.9e-133 479.2 366 64.2
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 6.4e-133 478.0 369 63.1
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 1.4e-132 476.9 369 65.0
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 2.4e-132 476.1 367 65.7
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 4.2e-132 475.3 372 63.7
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 5.4e-132 474.9 366 64.5
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 1.2e-131 473.8 361 67.3
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.6e-131 473.4 371 63.1
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 3.5e-131 472.2 371 62.8
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 7.8e-131 471.1 366 63.7
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 1.7e-130 469.9 366 64.2
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 1.7e-130 469.9 366 65.6
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 2.3e-130 469.5 369 64.0
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 5.1e-130 468.4 370 61.6
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 5.1e-130 468.4 370 63.0
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 1.9e-129 466.5 413 59.6
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 3.3e-129 465.7 370 64.1
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 3.3e-129 465.7 373 67.0
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 5.6e-129 464.9 375 61.6
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 5.6e-129 464.9 368 62.8
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 7.3e-129 464.5 370 62.4
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.6e-128 463.4 370 62.2
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 2.8e-128 462.6 368 63.3
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 3.6e-128 462.2 370 63.5
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 4.0e-127 458.8 366 61.2
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 5.8e-126 454.9 368 62.5
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 2.2e-125 453.0 363 62.0
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 3.8e-125 452.2 368 62.5
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 3.8e-125 452.2 373 61.9
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 4.9e-125 451.8 346 63.9
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 1.1e-124 450.7 371 62.0
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 4.2e-124 448.7 367 61.0
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 4.2e-124 448.7 367 61.0
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 1.6e-123 446.8 370 60.3
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 2.1e-123 446.4 372 59.9
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 2.7e-123 446.0 401 60.3
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 5.1e-122 441.8 371 60.9
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 7.4e-121 438.0 355 61.4
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 1.3e-120 437.2 366 62.0
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 2.8e-120 436.0 375 59.7
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 8.1e-120 434.5 370 61.6
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 1.1e-119 434.1 343 64.1
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 1.2e-118 430.6 348 63.2
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 4.5e-118 428.7 370 59.2
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 7.6e-118 427.9 367 62.7
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 7.6e-118 427.9 346 62.4
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 6.4e-117 424.9 370 61.1
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 1.4e-116 423.7 370 59.5
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 4.2e-116 422.2 354 61.6
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 5.5e-116 421.8 349 64.8
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 1.6e-115 420.2 353 62.3
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 4.6e-115 418.7 321 65.4
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 1.3e-114 417.2 371 58.2
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 3.9e-114 415.6 376 57.2
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 3.9e-114 415.6 370 57.0
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 1.5e-113 413.7 386 56.5
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 3.3e-113 412.5 376 56.9
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 4.3e-113 412.1 374 56.7
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 4.3e-113 412.1 375 57.9
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 3.7e-112 409.1 374 56.4
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 1.4e-111 407.1 374 56.1
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 1.4e-111 407.1 351 61.3
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 1.8e-111 406.8 370 55.1
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 2.4e-111 406.4 371 57.1
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 2.4e-111 406.4 326 60.7
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 3.1e-111 406.0 375 56.8
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 4.0e-111 405.6 377 57.3
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 5.3e-111 405.2 376 56.6
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 1.2e-110 404.1 370 54.6
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 3.4e-110 402.5 375 56.3
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 3.4e-110 402.5 379 56.2
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 4.5e-110 402.1 381 57.2
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 1.7e-109 400.2 385 55.3
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 3.8e-109 399.1 347 60.8
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 1.1e-108 397.5 322 62.1
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 1.4e-108 397.1 374 55.9
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 9.3e-108 394.4 340 58.5
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 1.6e-107 393.7 324 60.8
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 2.1e-107 393.3 370 55.1
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 6.0e-107 391.7 375 55.2
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 1.0e-106 391.0 329 59.3
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 1.9e-105 386.7 366 55.7
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 2.5e-105 386.3 374 55.1
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 1.8e-103 380.2 305 62.6
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 3.1e-103 379.4 371 54.7
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 4.1e-103 379.0 367 52.0
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 2.6e-102 376.3 371 51.5
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 4.5e-102 375.6 391 50.9
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 5.9e-102 375.2 351 55.8
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 5.0e-101 372.1 346 54.6
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 1.6e-99 367.1 382 51.8
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 7.9e-99 364.8 328 57.3
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.3e-96 357.5 371 52.6
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 4.1e-95 352.4 301 58.8
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 9.0e-95 351.3 332 54.8
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 5.9e-94 348.6 360 53.1
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 2.3e-90 336.7 366 48.9
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 3.8e-85 319.3 297 57.6
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 2.2e-80 303.5 340 48.8
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 1.6e-78 297.4 381 42.3
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 2.0e-78 297.0 232 63.8
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 2.2e-77 293.5 273 59.3
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 2.1e-75 287.0 259 59.8
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 4.0e-74 282.7 287 55.4
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 2.6e-73 280.0 292 52.7
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 7.5e-73 278.5 241 60.6
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 1.7e-72 277.3 415 40.0
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 7.0e-71 271.9 475 37.1
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 3.7e-64 249.6 382 37.2
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 7.0e-63 245.4 260 51.2
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.7e-61 240.7 241 54.4
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 4.0e-58 229.6 234 53.0
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 6.8e-58 228.8 388 35.6
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 8.8e-58 228.4 200 55.0
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 4.9e-56 222.6 251 49.0
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 1.5e-52 211.1 339 35.4
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 4.3e-52 209.5 202 58.4
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 1.2e-46 191.4 383 33.7
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 9.5e-44 181.8 115 73.9
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 1.6e-43 181.0 149 59.1
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 2.6e-41 173.7 137 60.6
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 3.8e-24 116.7 438 23.1
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 2.1e-22 110.9 75 68.0
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 1.1e-20 105.1 152 45.4
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 2.5e-20 104.0 200 29.5
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 9.9e-17 92.0 73 64.4
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 2.9e-16 90.5 120 43.3
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 1.0e-13 82.0 42 92.9
MBI11_g13051_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 1.1e-10 72.0 77 53.2
Hund16967 Selenicereus undatus HOM05D004815 ORTHO05D005742 1.3e-08 65.1 81 44.4
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 6.4e-08 62.8 50 58.0


User provided reference genes

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