Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 3.2e-56 221.5 109 100.0
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 4.4e-37 157.9 94 87.2
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 2.7e-31 138.7 93 78.5
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 1.4e-30 136.3 104 65.4
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 1.4e-30 136.3 94 73.4
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 1.4e-30 136.3 93 74.2
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 1.4e-30 136.3 93 74.2
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 2.3e-30 135.6 93 75.3
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 3.0e-30 135.2 103 70.9
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 5.2e-30 134.4 94 74.5
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 8.8e-30 133.7 94 72.3
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 3.4e-29 131.7 104 65.4
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 4.4e-29 131.3 93 73.1
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 4.4e-29 131.3 95 72.6
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 4.4e-29 131.3 94 74.5
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 4.4e-29 131.3 94 71.3
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 7.5e-29 130.6 94 74.5
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 9.8e-29 130.2 104 64.4
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 9.8e-29 130.2 93 73.1
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 1.3e-28 129.8 94 71.3
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 1.7e-28 129.4 93 71.0
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 2.2e-28 129.0 93 73.1
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 2.8e-28 128.6 104 64.4
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 3.7e-28 128.3 93 69.9
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 4.8e-28 127.9 93 67.7
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 6.3e-28 127.5 93 68.8
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 6.3e-28 127.5 92 70.7
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 6.3e-28 127.5 100 68.0
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 6.3e-28 127.5 93 73.1
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 8.3e-28 127.1 93 67.7
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 8.3e-28 127.1 104 64.4
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 1.1e-27 126.7 101 72.3
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 1.1e-27 126.7 93 69.9
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 1.4e-27 126.3 93 69.9
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 1.4e-27 126.3 93 69.9
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 1.8e-27 125.9 93 71.0
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 1.8e-27 125.9 98 66.3
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 1.8e-27 125.9 93 68.8
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 2.4e-27 125.6 104 63.5
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 2.4e-27 125.6 103 66.0
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 3.1e-27 125.2 92 70.7
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 3.1e-27 125.2 93 71.0
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 3.1e-27 125.2 93 69.9
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 3.1e-27 125.2 93 69.9
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 4.1e-27 124.8 101 67.3
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 4.1e-27 124.8 93 68.8
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 5.4e-27 124.4 90 68.9
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 7.0e-27 124.0 93 67.7
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 7.0e-27 124.0 93 69.9
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 7.0e-27 124.0 93 69.9
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 1.2e-26 123.2 95 71.6
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 1.2e-26 123.2 93 66.7
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 2.0e-26 122.5 98 65.3
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 2.7e-26 122.1 93 68.8
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 4.5e-26 121.3 94 64.9
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 4.5e-26 121.3 94 64.9
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 4.5e-26 121.3 93 68.8
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 4.5e-26 121.3 94 67.0
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 5.9e-26 120.9 93 65.6
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 7.7e-26 120.6 86 72.1
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 7.7e-26 120.6 93 66.7
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 7.7e-26 120.6 103 58.3
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 1.0e-25 120.2 93 66.7
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 1.0e-25 120.2 93 65.6
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 1.3e-25 119.8 104 60.6
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 2.3e-25 119.0 93 62.4
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 2.9e-25 118.6 93 64.5
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 2.9e-25 118.6 89 68.5
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 5.0e-25 117.9 98 66.3
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 5.0e-25 117.9 94 62.8
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 6.5e-25 117.5 92 67.4
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 1.5e-24 116.3 93 65.6
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 1.5e-24 116.3 103 61.2
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 1.5e-24 116.3 94 67.0
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 1.9e-24 115.9 93 63.4
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 1.9e-24 115.9 94 66.0
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 2.5e-24 115.5 105 58.1
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 4.2e-24 114.8 93 65.6
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 7.2e-24 114.0 97 59.8
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 9.5e-24 113.6 104 60.6
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 9.5e-24 113.6 93 63.4
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 9.5e-24 113.6 93 65.6
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 1.6e-23 112.8 92 64.1
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 1.6e-23 112.8 91 63.7
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 1.6e-23 112.8 115 53.0
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 2.8e-23 112.1 93 63.4
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 4.7e-23 111.3 93 63.4
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 4.7e-23 111.3 98 66.3
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 1.0e-22 110.2 93 63.4
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 1.8e-22 109.4 92 62.0
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 3.0e-22 108.6 92 60.9
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 3.0e-22 108.6 98 60.2
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 8.9e-22 107.1 91 61.5
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 1.2e-21 106.7 103 55.3
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 1.2e-21 106.7 92 59.8
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 4.4e-21 104.8 94 60.6
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 9.8e-21 103.6 92 58.7
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 9.8e-21 103.6 92 58.7
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 9.8e-21 103.6 92 58.7
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 1.3e-20 103.2 92 58.7
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 1.3e-20 103.2 60 81.7
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 2.2e-20 102.4 71 74.6
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 3.7e-20 101.7 97 56.7
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 4.9e-20 101.3 97 56.7
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 6.3e-20 100.9 96 57.3
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 1.1e-19 100.1 98 60.2
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 9.2e-19 97.1 62 75.8
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 1.6e-18 96.3 92 57.6
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 7.8e-18 94.0 101 53.5
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 1.0e-17 93.6 86 60.5
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 1.0e-17 93.6 92 55.4
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 1.0e-17 93.6 92 55.4
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 1.0e-17 93.6 92 55.4
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.3e-17 93.2 93 58.1
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 1.7e-17 92.8 94 51.1
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 1.7e-17 92.8 61 75.4
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 2.9e-17 92.0 92 55.4
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 3.8e-17 91.7 92 55.4
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 3.8e-17 91.7 92 55.4
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 6.6e-17 90.9 98 55.1
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 3.3e-16 88.6 106 49.1
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 9.5e-16 87.0 92 55.4
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 2.8e-15 85.5 94 52.1
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 3.0e-14 82.0 91 48.4
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 5.2e-14 81.3 96 51.0
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 5.2e-14 81.3 96 51.0
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 6.8e-14 80.9 95 50.5
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 1.5e-13 79.7 92 46.7
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 3.4e-13 78.6 91 47.3
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 9.8e-13 77.0 72 59.7
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 8.3e-12 73.9 56 64.3
GSVIVG01036883001 Vitis vinifera HOM05D004411 ORTHO05D005569 9.2e-11 70.5 55 61.8
arahy.Tifrunner.gnm1.ann1.ZM7UYF Arachis hypogaea HOM05D004411 ORTHO05D005569 1.6e-10 69.7 81 45.7
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 6.0e-10 67.8 92 41.3
PGSC0003DMG400013925 Solanum tuberosum HOM05D004411 ORTHO05D005569 8.0e-07 57.4 61 52.5


User provided reference genes

Program Settings