Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 5.1e-148 527.7 267 100.0
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 9.8e-131 470.3 264 87.5
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 6.3e-130 467.6 267 86.5
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 6.3e-130 467.6 259 89.2
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 1.1e-129 466.8 267 85.4
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 2.4e-129 465.7 264 87.1
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 2.4e-129 465.7 266 86.5
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 4.5e-128 461.5 264 87.5
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 2.9e-127 458.8 262 87.0
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 5.0e-127 458.0 268 85.4
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 5.0e-127 458.0 267 85.0
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 8.5e-127 457.2 267 85.8
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 8.5e-127 457.2 267 85.0
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 1.1e-126 456.8 267 85.0
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 1.5e-126 456.4 262 86.6
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.9e-126 456.1 267 83.5
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 1.9e-126 456.1 267 83.5
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 1.9e-126 456.1 267 84.3
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 5.5e-126 454.5 264 86.4
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 9.4e-126 453.8 264 84.8
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 1.2e-125 453.4 267 83.9
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.6e-125 453.0 267 83.1
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.1e-125 452.6 267 85.4
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 2.1e-125 452.6 267 83.1
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 4.7e-125 451.4 267 83.9
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 1.0e-124 450.3 267 83.5
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 1.0e-124 450.3 262 85.1
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 1.0e-124 450.3 264 86.0
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 1.8e-124 449.5 267 83.5
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 2.3e-124 449.1 263 84.8
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 1.2e-123 446.8 268 84.0
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 2.0e-123 446.0 267 83.1
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 3.4e-123 445.3 264 83.3
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 4.4e-123 444.9 267 82.8
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 9.8e-123 443.7 264 84.5
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 1.3e-122 443.4 267 83.1
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 2.2e-122 442.6 262 84.4
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 3.7e-122 441.8 264 83.3
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 8.3e-122 440.7 259 83.0
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.1e-121 440.3 264 84.5
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 2.4e-121 439.1 267 83.5
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 5.4e-121 438.0 261 84.7
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 7.0e-121 437.6 267 81.3
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 9.1e-121 437.2 266 84.6
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 9.1e-121 437.2 263 81.0
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.6e-120 436.4 267 81.6
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.5e-120 435.3 267 81.3
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 4.5e-120 434.9 268 83.2
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 4.5e-120 434.9 267 80.9
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.5e-120 434.9 267 80.9
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 4.5e-120 434.9 315 72.7
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 5.9e-120 434.5 265 83.4
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 7.7e-120 434.1 264 81.8
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 8.6e-119 430.6 261 82.4
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 8.6e-119 430.6 264 82.2
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 1.1e-118 430.3 264 81.1
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 1.5e-118 429.9 264 80.7
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.5e-118 429.1 255 85.5
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 2.5e-118 429.1 250 85.2
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 3.3e-118 428.7 272 81.2
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 5.5e-118 427.9 262 82.1
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 1.2e-117 426.8 264 80.7
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 1.6e-117 426.4 264 81.4
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 1.6e-117 426.4 261 82.8
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 2.8e-117 425.6 271 80.1
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 4.7e-117 424.9 267 79.0
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 6.1e-117 424.5 264 79.5
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 8.0e-117 424.1 268 81.3
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 1.0e-116 423.7 265 80.8
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.4e-116 423.3 266 77.8
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 1.8e-116 422.9 262 80.5
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 5.2e-116 421.4 254 82.3
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 6.8e-116 421.0 267 81.3
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 8.9e-116 420.6 285 77.2
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.2e-115 420.2 267 79.4
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 1.2e-115 420.2 265 80.8
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.5e-115 419.9 267 78.7
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 2.0e-115 419.5 261 80.1
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 2.0e-115 419.5 267 79.4
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 2.0e-115 419.5 267 78.7
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 2.0e-115 419.5 267 79.4
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 9.8e-115 417.2 257 81.7
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 3.7e-114 415.2 303 71.9
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 4.9e-114 414.8 267 79.0
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.8e-113 412.9 288 74.0
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.8e-113 412.9 265 77.4
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 4.1e-113 411.8 264 79.5
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 5.4e-113 411.4 251 80.1
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 1.6e-112 409.8 250 80.4
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 4.6e-112 408.3 264 78.0
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 1.1e-110 403.7 238 82.8
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 2.5e-110 402.5 262 77.5
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 4.3e-110 401.7 267 75.3
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 2.8e-109 399.1 262 78.2
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 4.7e-109 398.3 279 73.8
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 2.3e-108 396.0 284 74.3
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 1.2e-107 393.7 262 75.6
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 2.6e-107 392.5 264 75.4
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 7.5e-107 391.0 256 77.3
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 1.3e-106 390.2 259 75.7
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 1.7e-106 389.8 264 74.6
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 4.9e-106 388.3 317 66.6
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 3.2e-105 385.6 266 74.1
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 3.5e-104 382.1 250 77.6
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 3.9e-103 378.6 257 73.2
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 3.9e-103 378.6 257 73.2
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 6.6e-103 377.9 266 73.3
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 1.5e-102 376.7 252 76.2
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 9.5e-102 374.0 268 69.4
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 1.6e-101 373.2 260 73.5
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 1.6e-101 373.2 242 78.1
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 2.1e-101 372.9 266 72.9
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 2.3e-100 369.4 262 72.1
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 2.3e-100 369.4 272 72.1
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 7.5e-99 364.4 262 71.4
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 7.5e-99 364.4 265 70.2
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 4.9e-98 361.7 262 70.6
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 8.3e-98 360.9 262 70.6
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 1.1e-97 360.5 266 68.8
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 1.4e-97 360.1 263 71.5
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 1.9e-97 359.8 235 76.2
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 1.9e-97 359.8 257 71.6
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 1.6e-96 356.7 262 70.2
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 2.7e-96 355.9 262 70.2
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 3.5e-96 355.5 262 70.6
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 7.8e-96 354.4 227 78.0
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 1.7e-95 353.2 262 69.5
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 2.3e-95 352.8 262 71.4
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 3.9e-95 352.1 257 70.8
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 1.9e-94 349.7 261 69.0
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 4.3e-94 348.6 262 69.5
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 4.3e-94 348.6 262 69.5
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 5.6e-94 348.2 262 69.1
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 7.3e-94 347.8 259 71.0
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.2e-93 347.1 264 68.9
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 3.1e-92 342.4 262 69.8
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 1.5e-91 340.1 199 85.9
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 1.5e-91 340.1 253 67.6
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 3.4e-91 339.0 281 65.5
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 4.6e-88 328.6 265 66.4
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 4.6e-88 328.6 199 82.9
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 1.2e-85 320.5 198 81.3
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 1.6e-85 320.1 263 63.5
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 5.2e-84 315.1 263 63.1
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 1.5e-83 313.5 263 63.5
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 4.2e-81 305.4 263 62.0
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 1.3e-79 300.4 241 67.2
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 3.9e-79 298.9 263 60.8
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 1.9e-78 296.6 262 59.9
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 5.4e-73 278.5 191 73.8
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 5.1e-71 271.9 174 76.4
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 5.3e-68 261.9 144 88.2
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 2.0e-43 180.3 198 53.5
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 2.9e-42 176.4 120 75.0
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 3.2e-41 172.9 107 79.4
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 4.2e-41 172.6 244 43.4
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 9.4e-41 171.4 264 41.7
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 3.6e-40 169.5 148 60.1
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.8e-28 130.6 74 90.5
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 9.1e-28 128.3 93 69.9
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-26 124.4 231 39.0
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 1.2e-24 117.9 76 77.6
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 1.4e-20 104.4 181 39.2
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.3e-18 97.8 86 58.1
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 5.5e-17 92.4 182 33.5
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 3.7e-13 79.7 120 45.0
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 2.4e-12 77.0 40 82.5
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 4.1e-12 76.3 40 85.0
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 4.5e-11 72.8 40 80.0
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 1.7e-10 70.9 43 69.8
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 4.2e-09 66.2 135 33.3
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 1.4e-07 61.2 86 37.2


User provided reference genes

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