Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g02140 Coffea canephora HOM05D007562 ORTHO05D009721 3.7e-106 388.3 205 100.0
Cc09_g02120 Coffea canephora HOM05D007562 ORTHO05D009721 1.0e-95 353.6 205 92.2
Oeu043937.1 Olea europaea HOM05D007562 ORTHO05D009721 1.0e-55 220.7 207 62.8
CSS0037048 Camellia sinensis var. sinensis HOM05D007562 ORTHO05D009721 7.2e-41 171.4 227 46.7
Dinv11774 Davidia involucrata HOM05D007562 ORTHO05D009721 2.1e-40 169.9 227 47.6
Rhsim09G0152200 Rhododendron simsii HOM05D007562 ORTHO05D009721 3.9e-39 165.6 228 47.4
Nitab4.5_0000575g0170 Nicotiana tabacum HOM05D007562 ORTHO05D009721 6.3e-37 158.3 219 46.6
QL08p056015 Quercus lobata HOM05D007562 ORTHO05D009721 7.0e-36 154.8 217 44.7
Peaxi162Scf00072g00627 Petunia axillaris HOM05D007562 ORTHO05D009721 2.0e-35 153.3 222 46.4
Nitab4.5_0010206g0020 Nicotiana tabacum HOM05D007562 ORTHO05D009721 2.6e-35 152.9 214 44.9
Haze_16895 Corylus avellana HOM05D007562 ORTHO05D009721 5.9e-35 151.8 218 46.8
Cfa021509 Carpinus fangiana HOM05D007562 ORTHO05D009721 2.2e-34 149.8 218 45.0
GSVIVG01016281001 Vitis vinifera HOM05D007562 ORTHO05D009721 3.8e-34 149.1 211 46.4
Solyc04g049440.2 Solanum lycopersicum HOM05D007562 ORTHO05D009721 1.1e-33 147.5 216 44.0
CiPaw.01G273100 Carya illinoinensis HOM05D007562 ORTHO05D009721 3.2e-33 146.0 219 43.8
Cpa.g.sc53.80 Carica papaya HOM05D007562 ORTHO05D009721 1.6e-32 143.7 216 45.4
Thecc.10G073300 Theobroma cacao HOM05D007562 ORTHO05D009721 1.6e-32 143.7 220 44.1
TWI63G1657 Tripterygium wilfordii HOM05D007562 ORTHO05D009721 4.7e-32 142.1 215 43.3
Duzib114G0316 Durio zibethinus HOM05D007562 ORTHO05D009721 6.7e-31 138.3 217 40.6
ClCG05G020990 Citrullus lanatus HOM05D007562 ORTHO05D009721 1.5e-30 137.1 218 41.7
Nn4g24611 Nelumbo nucifera HOM05D007562 ORTHO05D009721 1.7e-29 133.7 269 37.9
DCAR_004783 Daucus carota HOM05D007562 ORTHO05D009721 2.8e-29 132.9 222 39.6
Potri.010G222200 Populus trichocarpa HOM05D007562 ORTHO05D009721 2.8e-29 132.9 219 43.4
Eucgr.G02827 Eucalyptus grandis HOM05D007562 ORTHO05D009721 1.8e-28 130.2 221 40.7
TAR629G1307 Trochodendron aralioides HOM05D007562 ORTHO05D009721 1.8e-28 130.2 269 36.4
Manes.07G100520 Manihot esculenta HOM05D007562 ORTHO05D009721 3.1e-28 129.4 212 42.0
CARHR198320 Cardamine hirsuta HOM05D007562 ORTHO05D009721 4.1e-28 129.0 208 39.4
COL.COLO4_23667 Corchorus olitorius HOM05D007562 ORTHO05D009721 9.1e-28 127.9 219 40.6
Gohir.A06G167500 Gossypium hirsutum HOM05D007562 ORTHO05D009721 1.6e-27 127.1 218 43.1
Gohir.D06G174900 Gossypium hirsutum HOM05D007562 ORTHO05D009721 5.9e-27 125.2 218 42.7
Gorai.010G205300 Gossypium raimondii HOM05D007562 ORTHO05D009721 5.9e-27 125.2 218 42.7
A02p02820 Brassica napus HOM05D007562 ORTHO05D009721 2.9e-26 122.9 208 39.4
BraA02t05255Z Brassica rapa HOM05D007562 ORTHO05D009721 2.9e-26 122.9 208 39.4
CsaV3_5G036330 Cucumis sativus L. HOM05D007562 ORTHO05D009721 2.9e-26 122.9 216 39.4
Sp6g29050 Schrenkiella parvula HOM05D007562 ORTHO05D009721 5.0e-26 122.1 208 39.4
C02p07440 Brassica napus HOM05D007562 ORTHO05D009721 6.5e-26 121.7 208 39.4
Thhalv10015291m.g Eutrema salsugineum HOM05D007562 ORTHO05D009721 8.5e-26 121.3 209 39.2
Lalb_Chr19g0129691 Lupinus albus HOM05D007562 ORTHO05D009721 8.5e-26 121.3 222 40.5
Atru.chr12.774 Acer truncatum HOM05D007562 ORTHO05D009721 1.1e-25 120.9 211 40.8
AT5G14990 Arabidopsis thaliana HOM05D007562 ORTHO05D009721 1.1e-25 120.9 211 39.3
BcaC03g13438 Brassica carinata HOM05D007562 ORTHO05D009721 1.5e-25 120.6 208 38.9
SalBow3G0440 Salvia bowleyana HOM05D007562 ORTHO05D009721 1.5e-25 120.6 173 46.2
Atru.chr12.749 Acer truncatum HOM05D007562 ORTHO05D009721 2.5e-25 119.8 211 40.8
BolC2t06675H Brassica oleracea HOM05D000286 ORTHO05D009721 2.5e-25 119.8 208 38.9
Carub.0006s1315 Capsella rubella HOM05D007562 ORTHO05D009721 2.5e-25 119.8 208 38.9
Ciclev10033636m.g Citrus clementina HOM05D007562 ORTHO05D009721 5.5e-25 118.6 214 42.1
Ciclev10033702m.g Citrus clementina HOM05D007562 ORTHO05D009721 5.5e-25 118.6 214 42.1
Ciclev10033298m.g Citrus clementina HOM05D007562 ORTHO05D009721 7.2e-25 118.2 214 42.1
AL6G25790 Arabidopsis lyrata HOM05D007562 ORTHO05D009721 1.2e-24 117.5 208 38.5
MELO3C012431.2 Cucumis melo HOM05D007562 ORTHO05D009721 1.2e-24 117.5 206 39.3
Ciclev10033616m.g Citrus clementina HOM05D007562 ORTHO05D009721 3.6e-24 115.9 214 41.6
Prupe.2G214000 Prunus persica HOM05D007562 ORTHO05D009721 2.3e-23 113.2 229 38.4
SGA_v2.0_scaffold71G24023 Striga asiatica HOM05D007562 ORTHO05D009721 3.0e-23 112.8 257 36.6
Migut.F01779 Erythranthe guttata HOM05D007562 ORTHO05D009721 5.2e-23 112.1 189 44.4
Phvul.004G082400 Phaseolus vulgaris HOM05D007562 ORTHO05D009721 6.8e-23 111.7 217 38.7
Ca_04680_v3 Cicer arietinum L. HOM05D007562 ORTHO05D009721 8.8e-23 111.3 236 36.9
VMungo0464G0183 Vigna mungo HOM05D007562 ORTHO05D009721 8.8e-23 111.3 210 37.6
Aa31LG11G14520 Aethionema arabicum HOM05D007562 ORTHO05D009721 1.5e-22 110.5 211 37.4
Ciclev10033468m.g Citrus clementina HOM05D007562 ORTHO05D009721 2.6e-22 109.8 211 40.8
Ciclev10033649m.g Citrus clementina HOM05D007562 ORTHO05D009721 3.4e-22 109.4 214 39.7
Lj2g0025537 Lotus japonicus HOM05D007562 ORTHO05D009721 3.4e-22 109.4 219 37.0
Aqoxy1G01241 Aquilegia oxysepala HOM05D007562 ORTHO05D009721 4.4e-22 109.0 266 34.6
Medtr6g060178 Medicago truncatula HOM05D007562 ORTHO05D009721 7.5e-22 108.2 223 35.4
FAN03G1079 Fragaria x ananassa HOM05D007562 ORTHO05D009721 2.2e-21 106.7 220 36.8
MBI10_g06724_MAGBIO Magnolia biondii HOM05D007562 ORTHO05D009721 6.3e-21 105.1 171 40.9
Sed0018277 Sechium edule HOM05D007562 ORTHO05D009721 8.3e-21 104.8 209 35.9
FvH4_7g19620 Fragaria vesca HOM05D007562 ORTHO05D009721 1.1e-20 104.4 226 36.3
RcHm_v2.0_Chr1g0363431 Rosa chinensis HOM05D007562 ORTHO05D009721 1.1e-20 104.4 220 35.9
Glyma.16G154800 Glycine max HOM05D007562 ORTHO05D009721 1.8e-20 103.6 217 37.3
TPR.G20136 Trifolium pratense HOM05D007562 ORTHO05D009721 2.0e-19 100.1 223 35.0
FAN10G0414 Fragaria x ananassa HOM05D007562 ORTHO05D009721 5.9e-19 98.6 220 35.9
PGR142G4136 Punica granatum HOM05D007562 ORTHO05D009721 5.9e-19 98.6 226 37.6
FAN01G2123 Fragaria x ananassa HOM05D007562 ORTHO05D009721 2.3e-18 96.7 221 34.8
MD07G1174900 Malus domestica HOM05D007562 ORTHO05D009721 3.8e-18 95.9 230 36.5
PSO063G7346 Papaver somniferum HOM05D007562 ORTHO05D009721 3.8e-18 95.9 264 31.1
Sc20g0001880 Simmondsia chinensis HOM05D007562 ORTHO05D009721 6.5e-18 95.1 253 33.2
arahy.Tifrunner.gnm1.ann1.264L58 Arachis hypogaea HOM05D007562 ORTHO05D009721 8.0e-16 88.2 217 34.6
ECA233G5285 Erigeron canadensis HOM05D007562 ORTHO05D009721 1.0e-15 87.8 208 33.2
PSO339G1903 Papaver somniferum HOM05D007562 ORTHO05D009721 2.6e-14 83.2 264 28.8
CDE08G0023 Ceratophyllum demersum HOM05D007562 ORTHO05D009721 4.5e-11 72.4 197 31.5
Lsat_1_v5_gn_8_19320 Lactuca sativa HOM05D007562 ORTHO05D009721 6.6e-10 68.6 207 28.5
FAN06G2349 Fragaria x ananassa HOM05D000286 ORTHO05D009721 4.0e-07 59.3 213 31.0
FAN06G4675 Fragaria x ananassa HOM05D007562 ORTHO05D009721 4.0e-07 59.3 213 31.0


User provided reference genes

Program Settings