Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g02120 Coffea canephora HOM05D007562 ORTHO05D009721 0.0e+00 1692.6 876 100.0
Oeu043937.1 Olea europaea HOM05D007562 ORTHO05D009721 2.6e-116 424.1 863 37.4
Dinv11774 Davidia involucrata HOM05D007562 ORTHO05D009721 3.6e-113 413.7 677 41.7
Rhsim09G0152200 Rhododendron simsii HOM05D007562 ORTHO05D009721 1.5e-111 408.3 906 34.8
Peaxi162Scf00072g00627 Petunia axillaris HOM05D007562 ORTHO05D009721 8.2e-110 402.5 887 36.2
CSS0037048 Camellia sinensis var. sinensis HOM05D007562 ORTHO05D009721 3.6e-105 387.1 935 33.3
GSVIVG01016281001 Vitis vinifera HOM05D007562 ORTHO05D009721 2.2e-102 377.9 932 32.8
Nitab4.5_0000575g0170 Nicotiana tabacum HOM05D007562 ORTHO05D009721 6.5e-99 366.3 879 34.5
QL08p056015 Quercus lobata HOM05D007562 ORTHO05D009721 8.5e-99 365.9 956 32.2
Cc09_g02140 Coffea canephora HOM05D007562 ORTHO05D009721 3.7e-94 350.5 205 92.2
CiPaw.01G273100 Carya illinoinensis HOM05D007562 ORTHO05D009721 5.3e-93 346.7 935 31.3
Nitab4.5_0010206g0020 Nicotiana tabacum HOM05D007562 ORTHO05D009721 9.1e-85 319.3 895 30.6
TAR629G1307 Trochodendron aralioides HOM05D007562 ORTHO05D009721 9.1e-85 319.3 997 29.8
Manes.07G100520 Manihot esculenta HOM05D007562 ORTHO05D009721 7.7e-84 316.2 953 30.0
Potri.010G222200 Populus trichocarpa HOM05D007562 ORTHO05D009721 7.7e-84 316.2 925 30.4
Thecc.10G073300 Theobroma cacao HOM05D007562 ORTHO05D009721 8.5e-83 312.8 825 30.4
Duzib114G0316 Durio zibethinus HOM05D007562 ORTHO05D009721 6.3e-78 296.6 761 30.6
Atru.chr12.774 Acer truncatum HOM05D007562 ORTHO05D009721 1.4e-77 295.4 902 31.4
Solyc04g049440.2 Solanum lycopersicum HOM05D007562 ORTHO05D009721 2.9e-75 287.7 676 33.0
Ciclev10033298m.g Citrus clementina HOM05D007562 ORTHO05D009721 5.5e-74 283.5 877 29.6
TWI63G1657 Tripterygium wilfordii HOM05D007562 ORTHO05D009721 8.0e-73 279.6 914 29.9
Atru.chr12.749 Acer truncatum HOM05D007562 ORTHO05D009721 8.3e-70 269.6 915 30.2
Eucgr.G02827 Eucalyptus grandis HOM05D007562 ORTHO05D009721 8.3e-70 269.6 771 30.1
Nn4g24611 Nelumbo nucifera HOM05D007562 ORTHO05D009721 4.0e-64 250.8 1061 25.6
Aqoxy1G01241 Aquilegia oxysepala HOM05D007562 ORTHO05D009721 1.3e-62 245.7 999 25.4
MD07G1174900 Malus domestica HOM05D007562 ORTHO05D009721 4.1e-61 240.7 923 27.3
Gohir.D06G174900 Gossypium hirsutum HOM05D007562 ORTHO05D009721 1.7e-59 235.3 727 29.2
Ciclev10033636m.g Citrus clementina HOM05D007562 ORTHO05D009721 5.0e-59 233.8 515 35.0
FvH4_7g19620 Fragaria vesca HOM05D007562 ORTHO05D009721 8.6e-59 233.0 908 27.6
FAN01G2123 Fragaria x ananassa HOM05D007562 ORTHO05D009721 1.1e-58 232.6 898 27.6
Gorai.010G205300 Gossypium raimondii HOM05D007562 ORTHO05D009721 1.5e-58 232.3 727 29.2
SGA_v2.0_scaffold71G24023 Striga asiatica HOM05D007562 ORTHO05D009721 1.5e-58 232.3 532 35.7
Gohir.A06G167500 Gossypium hirsutum HOM05D007562 ORTHO05D009721 1.9e-58 231.9 727 28.9
FAN03G1079 Fragaria x ananassa HOM05D007562 ORTHO05D009721 9.5e-58 229.6 907 27.3
ClCG05G020990 Citrullus lanatus HOM05D007562 ORTHO05D009721 3.1e-56 224.6 531 33.7
Prupe.2G214000 Prunus persica HOM05D007562 ORTHO05D009721 3.1e-56 224.6 923 26.9
Ciclev10033468m.g Citrus clementina HOM05D007562 ORTHO05D009721 4.0e-56 224.2 617 31.6
COL.COLO4_23667 Corchorus olitorius HOM05D007562 ORTHO05D009721 6.8e-56 223.4 642 29.4
Ca_04680_v3 Cicer arietinum L. HOM05D007562 ORTHO05D009721 4.4e-55 220.7 682 29.5
Haze_16895 Corylus avellana HOM05D007562 ORTHO05D009721 1.3e-54 219.2 864 26.6
DCAR_004783 Daucus carota HOM05D007562 ORTHO05D009721 2.2e-54 218.4 881 26.9
Cfa021509 Carpinus fangiana HOM05D007562 ORTHO05D009721 1.1e-53 216.1 866 26.0
Glyma.16G154800 Glycine max HOM05D007562 ORTHO05D009721 1.9e-53 215.3 957 25.8
Lalb_Chr19g0129691 Lupinus albus HOM05D007562 ORTHO05D009721 3.2e-53 214.5 944 26.9
Phvul.004G082400 Phaseolus vulgaris HOM05D007562 ORTHO05D009721 1.6e-52 212.2 936 26.9
FAN10G0414 Fragaria x ananassa HOM05D007562 ORTHO05D009721 3.5e-52 211.1 942 26.2
Ciclev10033649m.g Citrus clementina HOM05D007562 ORTHO05D009721 2.3e-51 208.4 620 30.3
RcHm_v2.0_Chr1g0363431 Rosa chinensis HOM05D007562 ORTHO05D009721 3.0e-51 208.0 941 25.8
Lj2g0025537 Lotus japonicus HOM05D007562 ORTHO05D009721 3.9e-51 207.6 920 26.7
VMungo0464G0183 Vigna mungo HOM05D007562 ORTHO05D009721 1.9e-50 205.3 952 25.8
MBI10_g06724_MAGBIO Magnolia biondii HOM05D007562 ORTHO05D009721 2.5e-50 204.9 495 30.9
arahy.Tifrunner.gnm1.ann1.264L58 Arachis hypogaea HOM05D007562 ORTHO05D009721 3.3e-50 204.5 927 25.9
SalBow3G0440 Salvia bowleyana HOM05D007562 ORTHO05D009721 3.3e-50 204.5 618 31.6
MELO3C012431.2 Cucumis melo HOM05D007562 ORTHO05D009721 8.1e-49 199.9 743 27.3
Ciclev10033616m.g Citrus clementina HOM05D007562 ORTHO05D009721 1.3e-46 192.6 596 29.9
CsaV3_5G036330 Cucumis sativus L. HOM05D007562 ORTHO05D009721 6.4e-46 190.3 584 28.8
Medtr6g060178 Medicago truncatula HOM05D007562 ORTHO05D009721 5.4e-45 187.2 920 25.4
Cpa.g.sc53.80 Carica papaya HOM05D007562 ORTHO05D009721 9.2e-45 186.4 264 46.2
FAN06G2349 Fragaria x ananassa HOM05D000286 ORTHO05D009721 7.8e-44 183.3 795 26.8
PSO339G1903 Papaver somniferum HOM05D007562 ORTHO05D009721 1.3e-43 182.6 856 25.5
BcaC03g13438 Brassica carinata HOM05D007562 ORTHO05D009721 5.1e-43 180.6 548 30.3
C02p07440 Brassica napus HOM05D007562 ORTHO05D009721 5.1e-43 180.6 513 30.6
Sp6g29050 Schrenkiella parvula HOM05D007562 ORTHO05D009721 6.6e-43 180.3 493 31.6
A02p02820 Brassica napus HOM05D007562 ORTHO05D009721 1.5e-42 179.1 633 29.2
BraA02t05255Z Brassica rapa HOM05D007562 ORTHO05D009721 1.9e-42 178.7 560 29.5
CARHR198320 Cardamine hirsuta HOM05D007562 ORTHO05D009721 2.1e-41 175.3 502 30.5
Thhalv10015291m.g Eutrema salsugineum HOM05D007562 ORTHO05D009721 2.1e-41 175.3 499 30.3
AL6G25790 Arabidopsis lyrata HOM05D007562 ORTHO05D009721 3.1e-40 171.4 504 31.0
Carub.0006s1315 Capsella rubella HOM05D007562 ORTHO05D009721 3.1e-40 171.4 699 27.0
AT5G14990 Arabidopsis thaliana HOM05D007562 ORTHO05D009721 4.0e-40 171.0 505 31.1
BolC2t06675H Brassica oleracea HOM05D000286 ORTHO05D009721 4.0e-40 171.0 508 29.7
PSO063G7346 Papaver somniferum HOM05D007562 ORTHO05D009721 1.1e-37 162.9 359 34.5
TPR.G20136 Trifolium pratense HOM05D007562 ORTHO05D009721 3.5e-36 157.9 561 28.7
Sed0018277 Sechium edule HOM05D007562 ORTHO05D009721 7.8e-36 156.8 810 25.4
Ciclev10033702m.g Citrus clementina HOM05D007562 ORTHO05D009721 8.7e-35 153.3 237 43.0
Migut.F01779 Erythranthe guttata HOM05D007562 ORTHO05D009721 8.1e-33 146.7 213 46.5
Aa31LG11G14520 Aethionema arabicum HOM05D007562 ORTHO05D009721 9.0e-32 143.3 516 28.9
ECA233G5285 Erigeron canadensis HOM05D007562 ORTHO05D009721 7.1e-29 133.7 253 36.8
PGR142G4136 Punica granatum HOM05D007562 ORTHO05D009721 9.3e-29 133.3 662 26.6
Sc20g0001880 Simmondsia chinensis HOM05D007562 ORTHO05D009721 8.7e-27 126.7 336 33.9
Actinidia38851 Actinidia chinensis HOM05D007562 ORTHO05D009721 9.6e-26 123.2 156 42.9
Lsat_1_v5_gn_8_19320 Lactuca sativa HOM05D007562 ORTHO05D009721 1.3e-22 112.8 261 30.7
CDE08G0023 Ceratophyllum demersum HOM05D007562 ORTHO05D009721 2.3e-19 102.1 328 26.8
FAN06G4675 Fragaria x ananassa HOM05D007562 ORTHO05D009721 5.6e-18 97.4 254 31.9
Dinv10790 Davidia involucrata HOM05D004088 ORTHO05D004736 2.4e-08 65.5 234 28.2
Cpa.g.sc53.79 Carica papaya HOM05D007562 ORTHO05D009721 4.0e-08 64.7 293 25.9
Zm00001eb077110 Zea mays HOM05D007562 ORTHO05D009721 5.3e-08 64.3 343 21.9
Os04g0521600 Oryza sativa ssp. japonica HOM05D007562 ORTHO05D004736 5.8e-07 60.8 205 29.8
MBI18_g11295_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 1.0e-06 60.1 541 21.1
Glyma.02G073401 Glycine max HOM05D007562 ORTHO05D009721 1.7e-06 59.3 328 22.9
TAR629G1981 Trochodendron aralioides HOM05D004088 ORTHO05D004736 4.9e-06 57.8 536 21.6


User provided reference genes

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