Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 2.4e-139 498.8 252 100.0
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 9.3e-107 390.6 230 83.9
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 7.8e-106 387.5 229 80.3
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 7.8e-106 387.5 229 80.8
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 8.7e-105 384.0 229 81.2
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 1.9e-104 382.9 229 79.0
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.9e-104 382.9 229 79.0
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 3.3e-104 382.1 229 79.9
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 4.3e-104 381.7 229 81.7
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 5.6e-104 381.3 229 78.6
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 1.3e-103 380.2 229 78.6
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 2.8e-103 379.0 229 80.8
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 6.2e-103 377.9 229 79.0
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.1e-102 377.1 229 80.3
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 1.8e-102 376.3 245 75.9
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 2.4e-102 375.9 229 79.9
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 2.4e-102 375.9 229 79.9
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 3.1e-102 375.6 230 80.4
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 3.1e-102 375.6 230 80.4
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 3.1e-102 375.6 215 85.1
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 3.1e-102 375.6 215 85.1
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 5.3e-102 374.8 229 78.6
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 6.9e-102 374.4 229 79.5
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 9.0e-102 374.0 229 79.9
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 9.0e-102 374.0 215 84.7
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 1.5e-101 373.2 223 80.3
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 2.6e-101 372.5 233 79.4
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 3.4e-101 372.1 229 77.7
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 3.4e-101 372.1 229 77.3
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 4.5e-101 371.7 229 77.3
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 7.6e-101 370.9 223 79.4
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 9.9e-101 370.5 215 83.7
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 9.9e-101 370.5 232 78.4
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.7e-100 369.8 229 77.7
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.7e-100 369.8 229 77.7
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 1.7e-100 369.8 229 79.0
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 2.2e-100 369.4 229 77.3
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 3.8e-100 368.6 229 77.3
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 3.8e-100 368.6 224 77.2
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 6.4e-100 367.9 228 77.6
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 1.1e-99 367.1 215 81.9
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 1.4e-99 366.7 229 76.4
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 1.4e-99 366.7 229 78.6
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 1.4e-99 366.7 229 77.7
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 1.9e-99 366.3 230 78.3
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 2.4e-99 365.9 229 76.9
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 7.1e-99 364.4 239 77.0
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 7.1e-99 364.4 229 75.5
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 2.1e-98 362.8 232 78.9
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 4.6e-98 361.7 247 72.9
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 4.6e-98 361.7 229 78.6
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 6.0e-98 361.3 229 75.5
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 1.0e-97 360.5 229 76.4
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 1.3e-97 360.1 247 73.7
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 1.8e-97 359.8 229 76.0
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 3.0e-97 359.0 232 76.7
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 3.9e-97 358.6 229 75.5
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 3.9e-97 358.6 221 78.7
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 8.7e-97 357.5 221 78.3
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 1.9e-96 356.3 229 75.5
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 3.3e-96 355.5 232 76.7
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 9.6e-96 354.0 229 73.4
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 1.3e-95 353.6 264 69.7
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 4.8e-95 351.7 238 71.0
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 4.8e-95 351.7 223 75.3
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 8.1e-95 350.9 230 74.8
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 1.8e-94 349.7 222 73.9
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 3.1e-94 349.0 232 74.6
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 6.9e-94 347.8 244 70.1
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 6.9e-94 347.8 218 76.6
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 9.0e-94 347.4 244 69.7
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.2e-93 347.1 232 74.1
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 2.6e-93 345.9 215 80.5
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 5.8e-93 344.7 240 70.8
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 5.8e-93 344.7 215 80.5
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 5.8e-93 344.7 260 69.2
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 5.8e-93 344.7 229 74.2
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 9.9e-93 344.0 238 71.0
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.3e-92 343.6 225 75.1
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 1.7e-92 343.2 229 73.8
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 1.7e-92 343.2 233 71.2
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 2.2e-92 342.8 229 70.7
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 2.9e-92 342.4 223 74.0
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 3.8e-92 342.0 235 69.8
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 6.4e-92 341.3 224 71.4
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 8.4e-92 340.9 226 76.5
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 1.4e-91 340.1 232 72.8
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 1.4e-91 340.1 234 71.4
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 1.9e-91 339.7 229 72.5
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 2.5e-91 339.3 229 71.2
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 3.2e-91 339.0 223 74.0
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 3.2e-91 339.0 214 74.8
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 3.2e-91 339.0 273 63.7
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 4.2e-91 338.6 223 73.5
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 4.2e-91 338.6 223 73.1
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 4.2e-91 338.6 229 69.9
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 5.5e-91 338.2 215 73.5
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 7.1e-91 337.8 223 73.1
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 9.3e-91 337.4 223 73.1
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 9.3e-91 337.4 215 73.0
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 1.6e-90 336.7 223 73.1
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 3.5e-90 335.5 304 58.6
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 4.6e-90 335.1 215 76.3
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 7.9e-90 334.3 222 70.7
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 1.0e-89 334.0 229 70.3
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 1.0e-89 334.0 226 70.4
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 1.3e-89 333.6 223 71.3
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 3.0e-89 332.4 219 71.2
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 3.9e-89 332.0 223 70.9
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 3.9e-89 332.0 223 71.3
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 8.7e-89 330.9 282 61.0
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 8.7e-89 330.9 214 72.9
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 1.5e-88 330.1 219 70.8
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 5.6e-88 328.2 232 71.1
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 7.4e-88 327.8 205 77.6
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 2.1e-87 326.2 219 69.4
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 4.8e-87 325.1 224 71.9
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.1e-86 323.9 222 71.2
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 1.1e-86 323.9 232 69.8
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.3e-84 317.0 179 81.6
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 8.4e-84 314.3 233 62.7
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.2e-82 310.5 179 83.2
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 3.5e-82 308.9 220 65.5
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 3.0e-81 305.8 240 62.9
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 8.7e-81 304.3 233 64.8
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 1.9e-80 303.1 232 62.9
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 1.4e-78 297.0 230 60.9
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 4.1e-78 295.4 220 62.7
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 9.0e-78 294.3 229 66.8
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.4e-70 270.4 233 55.4
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 4.5e-69 265.4 213 59.6
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 5.5e-67 258.5 227 52.9
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 2.7e-66 256.1 243 54.7
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 2.3e-65 253.1 227 60.4
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 1.1e-64 250.8 227 56.4
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 2.6e-64 249.6 227 56.4
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 7.4e-64 248.1 164 71.3
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 7.4e-64 248.1 217 53.5
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 1.2e-61 240.7 233 49.4
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 1.2e-61 240.7 233 49.4
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 2.0e-61 240.0 223 52.5
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.0e-60 237.7 222 52.3
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 4.7e-58 228.8 189 60.3
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 1.3e-55 220.7 214 52.8
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 2.0e-53 213.4 162 61.7
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 3.8e-52 209.1 214 56.1
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 1.3e-47 194.1 123 70.7
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 1.3e-44 184.1 189 47.6
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 3.8e-44 182.6 102 82.4
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 7.0e-38 161.8 218 39.0
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 7.0e-38 161.8 109 70.6
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 5.0e-36 155.6 108 66.7
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 6.6e-36 155.2 115 63.5
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 3.6e-34 149.4 134 55.2
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 1.2e-32 144.4 264 31.8
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 1.4e-30 137.5 108 67.6
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 6.6e-28 128.6 84 69.0
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 4.7e-26 122.5 76 81.6
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 5.2e-25 119.0 208 28.4
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 6.8e-25 118.6 114 53.5
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 7.5e-24 115.2 193 34.7
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 8.3e-23 111.7 124 49.2
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 1.3e-20 104.4 224 29.0
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 2.3e-20 103.6 69 63.8
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 3.5e-13 79.7 219 26.0
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 3.1e-09 66.6 54 51.9
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 4.4e-08 62.8 50 60.0
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 8.3e-07 58.5 35 80.0


User provided reference genes

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