Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 0.0e+00 1310.0 631 100.0
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 3.1e-284 981.5 633 72.8
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 5.2e-284 980.7 633 73.3
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 6.9e-284 980.3 641 72.2
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 4.4e-283 977.6 633 72.7
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 5.8e-283 977.2 633 72.8
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 2.9e-282 974.9 635 72.6
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 3.5e-280 968.0 633 72.0
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 6.0e-280 967.2 633 71.1
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 1.0e-279 966.5 608 75.5
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 1.0e-279 966.5 633 72.0
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 1.7e-279 965.7 632 72.0
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 3.0e-279 964.9 633 70.5
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 1.5e-278 962.6 633 71.7
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 2.8e-277 958.4 633 71.4
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 1.1e-276 956.4 632 70.7
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 1.1e-276 956.4 632 70.7
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 2.4e-276 955.3 633 71.2
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 6.9e-276 953.7 633 71.1
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 1.1e-273 946.4 633 69.7
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 1.9e-273 945.7 633 70.5
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 2.1e-272 942.2 633 69.7
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 3.0e-271 938.3 633 69.8
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 1.1e-270 936.4 633 70.0
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 3.3e-270 934.9 636 70.3
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 1.6e-269 932.6 635 69.1
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 2.8e-269 931.8 635 69.1
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 3.7e-269 931.4 635 68.5
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 4.0e-268 927.9 635 69.6
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 4.5e-267 924.5 635 68.7
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 1.7e-266 922.5 636 69.5
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 2.9e-266 921.8 635 67.9
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 1.6e-264 916.0 631 69.9
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 4.6e-264 914.4 633 68.7
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 1.8e-263 912.5 635 67.7
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 8.7e-263 910.2 636 66.7
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 9.6e-262 906.7 594 71.5
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 2.1e-261 905.6 633 68.6
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 4.5e-259 897.9 635 67.1
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 1.7e-258 896.0 633 65.7
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 6.3e-253 877.5 635 65.8
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 1.2e-248 863.2 605 68.1
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 2.3e-247 859.0 622 65.1
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 2.7e-232 808.9 646 61.1
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 2.7e-232 808.9 636 60.1
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 3.1e-228 795.4 637 60.0
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 1.7e-218 763.1 634 58.0
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 4.2e-217 758.4 637 57.1
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 2.1e-216 756.1 633 57.5
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 2.1e-216 756.1 633 57.5
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 1.5e-214 750.0 638 57.2
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 2.4e-212 742.7 633 56.6
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 1.2e-211 740.3 644 55.6
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 1.8e-207 726.5 534 66.1
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 1.7e-205 719.9 636 55.2
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 1.5e-201 706.8 634 55.0
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 3.4e-198 695.7 544 59.0
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 1.0e-170 604.4 639 48.8
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 1.2e-166 590.9 637 47.6
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 1.3e-162 577.4 640 45.8
GSVIVG01002953001 Vitis vinifera HOM05D007895 ORTHO05D010017 9.3e-156 554.7 360 72.5
Cc00_g03030 Coffea canephora HOM05D007895 ORTHO05D010017 8.7e-138 495.0 247 96.0
CiPaw.09G090200 Carya illinoinensis HOM05D007895 ORTHO05D010017 3.6e-123 446.4 303 69.0
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 2.0e-121 440.7 739 35.2
MSTRG.7225 Avicennia marina HOM05D007895 ORTHO05D010017 2.0e-113 414.1 270 73.0
CANSAT56G1122 Cannabis sativa HOM05D007895 ORTHO05D010017 1.2e-105 388.3 275 67.6
Cpa.g.sc189.18 Carica papaya HOM05D007895 ORTHO05D010017 1.2e-102 378.3 244 72.5
AUR62021973 Chenopodium quinoa HOM05D007895 ORTHO05D010017 1.3e-96 358.2 269 62.1
AUR62012684 Chenopodium quinoa HOM05D007895 ORTHO05D010017 4.8e-96 356.3 269 61.7
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 7.7e-94 349.0 241 66.4
Thhalv10026963m.g Eutrema salsugineum HOM05D007895 ORTHO05D010017 2.1e-91 340.9 256 62.9
AT4G21890 Arabidopsis thaliana HOM05D007895 ORTHO05D010017 4.7e-91 339.7 252 64.3
Lalb_Chr15g0087521 Lupinus albus HOM05D007895 ORTHO05D010017 1.4e-90 338.2 224 70.1
CARHR228650 Cardamine hirsuta HOM05D007895 ORTHO05D010017 2.3e-90 337.4 264 61.4
Aa31LG6G3880 Aethionema arabicum HOM05D007895 ORTHO05D010017 3.6e-83 313.5 255 59.2
Sc05g0009090 Simmondsia chinensis HOM05D007895 ORTHO05D010017 1.2e-81 308.5 252 57.9
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 8.6e-61 239.2 256 53.5
SalBow8G0130 Salvia bowleyana HOM05D007895 ORTHO05D010017 2.1e-51 208.0 170 60.0
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 5.3e-42 176.8 130 64.6
Rhsim13G0155300 Rhododendron simsii HOM05D007895 ORTHO05D013379 7.9e-38 162.9 261 40.2
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 8.1e-35 152.9 383 29.8
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 8.1e-35 152.9 365 31.2
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 4.0e-34 150.6 373 29.0
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 4.0e-34 150.6 366 30.9
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 4.0e-34 150.6 377 30.5
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 5.3e-34 150.2 373 29.0
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 2.0e-33 148.3 372 28.5
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 1.3e-32 145.6 376 30.1
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 1.7e-32 145.2 372 29.8
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 1.7e-32 145.2 376 30.1
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 2.2e-32 144.8 383 28.5
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 6.5e-32 143.3 374 29.7
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 1.1e-31 142.5 374 27.8
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 1.9e-31 141.7 384 28.4
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 1.9e-31 141.7 368 28.0
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 1.9e-31 141.7 368 28.0
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 4.2e-31 140.6 370 27.8
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 4.2e-31 140.6 372 28.2
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 5.5e-31 140.2 384 29.4
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 9.3e-31 139.4 399 27.6
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 1.2e-30 139.0 372 26.9
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 1.2e-30 139.0 374 28.1
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 1.6e-30 138.7 372 28.0
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 2.1e-30 138.3 375 29.1
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.7e-30 137.9 372 29.0
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 2.7e-30 137.9 400 28.2
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 3.5e-30 137.5 392 30.1
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 3.5e-30 137.5 361 29.9
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 4.6e-30 137.1 366 28.1
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 6.0e-30 136.7 383 29.0
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 7.9e-30 136.3 373 29.2
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 1.0e-29 136.0 378 28.6
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 1.3e-29 135.6 372 28.0
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 1.8e-29 135.2 376 29.5
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 2.3e-29 134.8 372 26.9
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 5.1e-29 133.7 390 27.9
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 5.1e-29 133.7 375 30.9
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 6.7e-29 133.3 377 27.9
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 6.7e-29 133.3 379 29.8
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 1.1e-28 132.5 369 28.7
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 1.1e-28 132.5 371 28.3
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 1.5e-28 132.1 355 25.4
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 2.5e-28 131.3 392 28.6
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.5e-28 131.3 377 30.2
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 2.5e-28 131.3 376 29.3
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 3.3e-28 131.0 366 28.7
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 3.3e-28 131.0 364 28.6
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 7.4e-28 129.8 371 28.0
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 1.3e-27 129.0 368 27.4
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 1.3e-27 129.0 398 28.4
CAN.G328.16 Capsicum annuum HOM05D007895 ORTHO05D010017 2.1e-27 128.3 152 46.7
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 3.7e-27 127.5 384 26.6
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 6.3e-27 126.7 367 28.1
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 6.3e-27 126.7 375 27.7
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 8.2e-27 126.3 379 28.5
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 8.2e-27 126.3 379 27.7
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 1.1e-26 125.9 363 28.4
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.1e-26 125.9 371 27.5
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 1.8e-26 125.2 379 27.4
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 3.1e-26 124.4 379 29.3
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 3.1e-26 124.4 371 26.7
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 5.3e-26 123.6 378 29.6
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 9.0e-26 122.9 349 28.7
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 1.2e-25 122.5 371 28.8
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 1.2e-25 122.5 375 27.5
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 2.0e-25 121.7 375 28.5
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 2.6e-25 121.3 380 27.1
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 3.4e-25 120.9 376 26.6
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 4.5e-25 120.6 369 27.6
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 7.6e-25 119.8 379 26.9
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 1.0e-24 119.4 364 27.2
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 1.0e-24 119.4 374 27.3
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 1.0e-24 119.4 384 27.6
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 1.3e-24 119.0 386 26.4
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 1.7e-24 118.6 325 28.0
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 5.0e-24 117.1 315 28.6
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 2.5e-23 114.8 348 28.4
HPP92_001781 Vanilla planifolia HOM05D007895 ORTHO05D010017 4.2e-23 114.0 129 48.1
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 7.2e-23 113.2 351 27.1
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 7.2e-23 113.2 224 33.9
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 1.2e-22 112.5 394 27.4
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 1.2e-22 112.5 402 26.4
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 1.6e-22 112.1 310 29.0
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 1.0e-21 109.4 241 31.1
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.3e-21 109.0 317 27.8
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 1.3e-21 109.0 306 25.2
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 5.1e-21 107.1 371 28.3
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 6.7e-21 106.7 359 28.1
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 8.7e-21 106.3 322 27.6
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 1.9e-20 105.1 418 24.9
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 1.3e-19 102.4 353 26.3
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.6e-19 102.1 241 31.1
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 2.4e-18 98.2 227 30.8
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 2.4e-18 98.2 241 30.7
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 5.3e-18 97.1 251 26.7
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 1.2e-17 95.9 286 26.2
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 1.1e-15 89.4 158 34.8
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 1.1e-12 79.3 243 25.1
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 3.7e-11 74.3 362 24.3
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 3.1e-10 71.2 95 37.9
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 2.7e-06 58.2 155 26.5


User provided reference genes

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