Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 0.0e+00 2457.6 1325 100.0
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 0.0e+00 1110.1 1484 49.1
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 2.0e-309 1066.2 1426 48.8
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 2.2e-271 939.9 1349 47.3
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 3.1e-262 909.4 1331 45.7
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 7.0e-262 908.3 1454 44.2
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 9.1e-262 907.9 1437 44.0
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 1.3e-260 904.0 1450 43.7
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 3.1e-254 882.9 1300 46.0
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 4.1e-254 882.5 1419 44.6
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.8e-252 875.9 1179 48.5
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 5.0e-252 875.5 1254 46.9
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 8.5e-252 874.8 1427 42.5
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 1.2e-250 870.9 1471 42.2
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 1.3e-247 860.9 1508 41.6
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 5.9e-245 852.0 1416 43.2
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 5.0e-244 849.0 1451 41.6
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 3.2e-243 846.3 1328 44.3
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 9.4e-243 844.7 1395 44.7
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 1.0e-241 841.3 1367 45.0
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 1.5e-240 837.4 1447 42.8
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 2.0e-240 837.0 1417 41.8
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 9.8e-240 834.7 1310 44.2
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 8.3e-239 831.6 1496 42.0
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 3.1e-238 829.7 1501 41.4
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 3.1e-238 829.7 1447 42.6
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 7.7e-237 825.1 1447 42.6
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 7.7e-237 825.1 1495 41.2
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 1.1e-235 821.2 1516 41.0
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 1.8e-233 813.9 1364 43.8
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 5.7e-232 808.9 1376 43.6
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 5.7e-232 808.9 1374 43.9
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 2.9e-228 796.6 1386 40.5
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 6.1e-226 788.9 1365 42.3
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 1.0e-225 788.1 1468 40.8
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 1.8e-225 787.3 1385 40.6
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 5.8e-224 782.3 1256 43.8
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 7.5e-224 781.9 1382 41.2
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 1.3e-223 781.2 1251 44.1
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 1.4e-222 777.7 1395 42.4
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 4.1e-222 776.2 1379 41.0
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 1.0e-220 771.5 1405 41.9
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 1.0e-220 771.5 1452 41.8
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 8.6e-220 768.5 1448 40.7
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 5.8e-216 755.7 1285 42.3
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 9.8e-216 755.0 1467 40.8
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 1.0e-212 745.0 1440 39.9
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 1.3e-212 744.6 1463 40.2
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 3.3e-211 740.0 1474 39.3
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 1.1e-209 734.9 1492 39.3
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 2.3e-209 733.8 1456 40.4
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 4.9e-207 726.1 1365 40.5
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 2.5e-203 713.8 1273 40.9
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 8.9e-201 705.3 1238 42.0
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 1.5e-200 704.5 1344 38.4
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 2.2e-199 700.7 1359 38.9
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 8.7e-196 688.7 1413 39.1
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 3.3e-195 686.8 1375 39.0
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 8.1e-194 682.2 1451 37.5
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 1.8e-193 681.0 1272 39.2
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 6.9e-193 679.1 1238 42.7
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.5e-192 677.9 1127 42.7
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 5.8e-192 676.0 1316 41.0
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 2.4e-190 670.6 1197 40.7
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 3.2e-190 670.2 1238 41.8
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 1.2e-189 668.3 1303 40.4
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 6.2e-186 656.0 1198 40.0
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 1.2e-184 651.7 1286 38.7
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 2.0e-184 651.0 971 45.0
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 9.9e-184 648.7 1399 38.2
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 2.2e-183 647.5 1187 39.3
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 4.9e-183 646.4 1243 41.3
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 1.6e-181 641.3 1203 40.5
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 4.6e-181 639.8 1273 41.5
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 2.9e-175 620.5 1426 35.8
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 6.4e-175 619.4 843 47.6
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 7.1e-174 615.9 1373 37.0
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 1.5e-171 608.2 1315 38.9
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 4.8e-170 603.2 1152 38.5
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 5.1e-164 583.2 1190 38.9
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 2.8e-162 577.4 1226 38.5
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 1.4e-161 575.1 1369 35.6
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 3.8e-159 567.0 1251 38.0
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 5.0e-159 566.6 1206 37.8
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 6.5e-159 566.2 1185 38.0
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 4.2e-158 563.5 1379 36.5
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 7.2e-158 562.8 1141 38.5
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 1.6e-157 561.6 1198 39.4
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 2.8e-154 550.8 1164 38.2
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 2.8e-154 550.8 1215 37.5
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 2.4e-153 547.7 1195 38.4
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 5.3e-153 546.6 1214 37.7
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 2.5e-150 537.7 1219 36.4
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 3.2e-150 537.3 1219 36.4
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 1.3e-146 525.4 1248 36.1
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 8.5e-143 512.7 1425 34.2
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 2.0e-136 491.5 661 47.2
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 3.5e-136 490.7 1159 34.9
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.9e-135 487.6 550 56.4
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 5.5e-134 483.4 1152 35.9
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 1.4e-132 478.8 1454 32.3
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 7.0e-121 439.9 577 49.2
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.8e-113 415.2 1217 35.0
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 1.7e-103 382.1 440 52.7
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 2.1e-101 375.2 1025 34.5
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 1.8e-100 372.1 760 38.4
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 8.9e-100 369.8 619 41.4
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 2.2e-98 365.2 819 40.0
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 1.9e-97 362.1 791 36.0
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 6.2e-93 347.1 445 49.0
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 4.0e-92 344.4 643 43.2
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 9.2e-89 333.2 492 45.7
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 5.2e-84 317.4 605 40.3
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 1.5e-75 289.3 678 36.4
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 6.0e-72 277.3 499 41.9
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 5.1e-71 274.2 300 50.7
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 2.4e-65 255.4 400 44.0
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 2.1e-56 225.7 271 46.9
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 1.9e-54 219.2 453 37.1
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 2.4e-52 212.2 454 37.2
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 7.4e-46 190.7 564 30.5
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 4.1e-44 184.9 158 58.9
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 3.2e-41 175.3 342 40.4
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 1.8e-39 169.5 506 33.0
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 3.0e-39 168.7 707 29.0
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 3.3e-38 165.2 417 33.6
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 1.3e-37 163.3 143 58.7
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 1.7e-37 162.9 589 30.7
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 4.1e-36 158.3 234 40.6
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 4.5e-35 154.8 233 39.1
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 9.1e-28 130.6 219 39.3
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 3.5e-27 128.6 264 40.5
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 4.5e-27 128.3 269 39.0
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 2.0e-22 112.8 421 29.0
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 3.3e-22 112.1 534 28.5
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.7e-21 109.8 123 51.2
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 6.3e-21 107.8 521 31.5
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 2.2e-18 99.4 253 32.8
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 3.2e-17 95.5 445 24.9
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.1e-12 80.5 113 49.6
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 5.4e-12 78.2 90 45.6
MD05G1347200 Malus domestica HOM05D002890 ORTHO05D005855 7.2e-09 67.8 353 34.8
SHI02204 Sapria himalayana HOM05D002890 ORTHO05D005855 7.2e-09 67.8 124 40.3
Haze_20535 Corylus avellana HOM05D002890 ORTHO05D038830 2.3e-07 62.8 157 35.7


User provided reference genes

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