Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g01290 Coffea canephora HOM05D007052 ORTHO05D008871 1.3e-96 356.3 172 100.0
Rhsim02G0105300 Rhododendron simsii HOM05D007052 ORTHO05D008871 4.4e-68 261.5 183 71.0
vmacro15801 Vaccinium macrocarpon HOM05D007052 ORTHO05D008871 4.4e-68 261.5 181 70.7
VMungo0540G2459 Vigna mungo HOM05D007052 ORTHO05D008871 2.9e-67 258.8 172 73.8
GSVIVG01012660001 Vitis vinifera HOM05D007052 ORTHO05D008871 3.8e-67 258.5 169 75.7
Lj1A1235T90 Lonicera japonica HOM05D007052 ORTHO05D008871 6.4e-67 257.7 166 75.9
Cfa000169 Carpinus fangiana HOM05D007052 ORTHO05D008871 1.4e-66 256.5 172 75.6
TAR627G0466 Trochodendron aralioides HOM05D007052 ORTHO05D008871 1.9e-66 256.1 169 72.2
Haze_06850 Corylus avellana HOM05D007052 ORTHO05D008871 3.2e-66 255.4 172 75.0
Phvul.006G146300 Phaseolus vulgaris HOM05D007052 ORTHO05D008871 6.0e-65 251.1 172 71.5
Glyma.15G111400 Glycine max HOM05D007052 ORTHO05D008871 3.0e-64 248.8 173 70.5
EL10Ac8g20122 Beta vulgaris HOM05D007052 ORTHO05D008871 5.6e-63 244.6 169 70.4
Dinv20100 Davidia involucrata HOM05D007052 ORTHO05D008871 1.6e-62 243.0 186 68.3
TWI38G1879 Tripterygium wilfordii HOM05D007052 ORTHO05D008871 2.1e-62 242.7 168 73.8
PGR042G3505 Punica granatum HOM05D007052 ORTHO05D008871 2.8e-62 242.3 141 81.6
Glyma.09G007000 Glycine max HOM05D007052 ORTHO05D008871 4.7e-62 241.5 173 68.8
Duzib235G0934 Durio zibethinus HOM05D007052 ORTHO05D008871 6.9e-61 237.7 165 69.7
Eucgr.E03993 Eucalyptus grandis HOM05D007052 ORTHO05D008871 9.0e-61 237.3 175 69.7
Potri.011G010300 Populus trichocarpa HOM05D007052 ORTHO05D008871 2.0e-60 236.1 173 71.1
SGA_v2.0_scaffold7G03781 Striga asiatica HOM05D007052 ORTHO05D008871 2.6e-60 235.7 165 68.5
Ciclev10016958m.g Citrus clementina HOM05D007052 ORTHO05D008871 3.4e-60 235.3 173 69.9
Sc05g0009410 Simmondsia chinensis HOM05D007052 ORTHO05D008871 4.4e-60 235.0 170 70.6
Ca_00688_v3 Cicer arietinum L. HOM05D007052 ORTHO05D008871 1.3e-59 233.4 176 68.2
MD05G1351600 Malus domestica HOM05D007052 ORTHO05D008871 3.8e-59 231.9 178 70.2
Sabra11G0007900 Salix brachista HOM05D007052 ORTHO05D008871 4.9e-59 231.5 174 70.7
Thecc.06G227100 Theobroma cacao HOM05D007052 ORTHO05D008871 4.9e-59 231.5 166 68.7
Manes.17G028000 Manihot esculenta HOM05D007052 ORTHO05D008871 6.4e-59 231.1 171 65.5
Lalb_Chr18g0056571 Lupinus albus HOM05D007052 ORTHO05D008871 8.4e-59 230.7 172 66.9
arahy.Tifrunner.gnm1.ann1.LNF63F Arachis hypogaea HOM05D007052 ORTHO05D008871 1.1e-58 230.3 177 66.7
arahy.Tifrunner.gnm1.ann1.MS5PCD Arachis hypogaea HOM05D007052 ORTHO05D008871 1.1e-58 230.3 177 66.7
MD10G1325900 Malus domestica HOM05D007052 ORTHO05D008871 1.1e-58 230.3 178 69.7
Aqoxy1G03011 Aquilegia oxysepala HOM05D007052 ORTHO05D008871 3.2e-58 228.8 173 65.9
CANSAT56G3240 Cannabis sativa HOM05D007052 ORTHO05D008871 1.6e-57 226.5 144 77.1
Lj6g0012328 Lotus japonicus HOM05D007052 ORTHO05D008871 1.6e-57 226.5 174 66.7
Actinidia11870 Actinidia chinensis HOM05D007052 ORTHO05D008871 3.5e-57 225.3 125 84.8
CAN.G1014.43 Capsicum annuum HOM05D007052 ORTHO05D008871 2.3e-56 222.6 166 64.5
Sed0006602 Sechium edule HOM05D007052 ORTHO05D008871 8.7e-56 220.7 150 70.0
Gohir.A10G011300 Gossypium hirsutum HOM05D007052 ORTHO05D008871 1.1e-55 220.3 141 75.9
Gorai.011G012000 Gossypium raimondii HOM05D007052 ORTHO05D008871 1.1e-55 220.3 141 75.9
Lsat_1_v5_gn_1_129560 Lactuca sativa HOM05D007052 ORTHO05D008871 1.5e-55 219.9 168 65.5
Sopen02g025730 Solanum pennellii HOM05D007052 ORTHO05D008871 1.5e-55 219.9 165 64.8
Gohir.D06G156800 Gossypium hirsutum HOM05D007052 ORTHO05D008871 4.3e-55 218.4 168 66.1
A09p26390 Brassica napus HOM05D007052 ORTHO05D008871 3.6e-54 215.3 156 68.6
BraA09t38213Z Brassica rapa HOM05D007052 ORTHO05D008871 3.6e-54 215.3 156 68.6
BcaC04g21282 Brassica carinata HOM05D007052 ORTHO05D008871 4.8e-54 214.9 156 68.6
C09p33580 Brassica napus HOM05D007052 ORTHO05D008871 4.8e-54 214.9 156 68.6
BolC9t56192H Brassica oleracea HOM05D007052 ORTHO05D008871 4.8e-54 214.9 156 68.6
Medtr2g024300 Medicago truncatula HOM05D007052 ORTHO05D008871 4.8e-54 214.9 174 63.2
TPR.G13090 Trifolium pratense HOM05D007052 ORTHO05D008871 8.1e-54 214.2 174 63.8
MELO3C007415.2 Cucumis melo HOM05D007052 ORTHO05D008871 1.1e-53 213.8 176 62.5
AT4G04330 Arabidopsis thaliana HOM05D007052 ORTHO05D008871 1.8e-53 213.0 138 73.9
Sp6g04520 Schrenkiella parvula HOM05D007052 ORTHO05D008871 2.4e-53 212.6 137 75.2
BcaB01g01799 Brassica carinata HOM05D007052 ORTHO05D008871 6.9e-53 211.1 139 73.4
Carub.0006s3216 Capsella rubella HOM05D007052 ORTHO05D008871 6.9e-53 211.1 158 67.7
PSO541G4001 Papaver somniferum HOM05D007052 ORTHO05D008871 9.0e-53 210.7 175 61.7
PSO675G2240 Papaver somniferum HOM05D007052 ORTHO05D008871 9.0e-53 210.7 174 61.5
CARHR253150 Cardamine hirsuta HOM05D007052 ORTHO05D008871 1.2e-52 210.3 138 73.2
PGSC0003DMG400016462 Solanum tuberosum HOM05D007052 ORTHO05D008871 1.2e-52 210.3 147 68.7
THA.LOC104812978 Tarenaya hassleriana HOM05D007052 ORTHO05D008871 1.5e-52 209.9 141 71.6
AUR62012751 Chenopodium quinoa HOM05D007052 ORTHO05D008871 2.6e-52 209.1 169 63.3
Aa31LG9G9870 Aethionema arabicum HOM05D007052 ORTHO05D008871 4.5e-52 208.4 145 70.3
ATR0624G054 Amborella trichopoda HOM05D007052 ORTHO05D008871 5.8e-52 208.0 133 75.2
HanXRQChr01g0006501 Helianthus annuus HOM05D007052 ORTHO05D008871 5.8e-52 208.0 175 62.3
CSS0050367 Camellia sinensis var. sinensis HOM05D007052 ORTHO05D008871 7.6e-52 207.6 130 79.2
AL6G47870 Arabidopsis lyrata HOM05D007052 ORTHO05D008871 3.8e-51 205.3 126 77.8
Gohir.A06G150600 Gossypium hirsutum HOM05D007052 ORTHO05D008871 3.8e-51 205.3 168 62.5
QL05p072067 Quercus lobata HOM05D007052 ORTHO05D008871 4.9e-51 204.9 230 52.2
ECA248G2484 Erigeron canadensis HOM05D007052 ORTHO05D008871 8.4e-51 204.1 127 77.2
CsaV3_6G048750 Cucumis sativus L. HOM05D007052 ORTHO05D008871 1.1e-50 203.8 122 78.7
Os08g0425200 Oryza sativa ssp. japonica HOM05D007052 ORTHO05D008871 1.2e-49 200.3 138 69.6
Migut.M01374 Erythranthe guttata HOM05D007052 ORTHO05D008871 1.3e-48 196.8 143 69.9
Hund21433 Selenicereus undatus HOM05D007052 ORTHO05D008871 3.9e-48 195.3 198 55.6
CDE07G0375 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 1.5e-47 193.4 123 71.5
Solyc02g081060.4 Solanum lycopersicum HOM05D007052 ORTHO05D008871 2.1e-46 189.5 120 75.0
ClCG01G021710 Citrullus lanatus HOM05D007052 ORTHO05D008871 1.8e-45 186.4 151 64.2
DCAR_024989 Daucus carota HOM05D007052 ORTHO05D008871 5.3e-45 184.9 121 72.7
Ah.09g234570 Amaranthus hybridus HOM05D007052 ORTHO05D008871 6.9e-45 184.5 144 66.0
COL.COLO4_31826 Corchorus olitorius HOM05D007052 ORTHO05D008871 1.2e-44 183.7 125 70.4
AUR62021907 Chenopodium quinoa HOM05D007052 ORTHO05D008871 1.7e-43 179.9 141 63.1
Hund23440 Selenicereus undatus HOM05D007052 ORTHO05D008871 6.4e-43 177.9 121 70.2
Peaxi162Scf00178g00039 Petunia axillaris HOM05D007052 ORTHO05D008871 2.4e-42 176.0 127 67.7
Pp3c25_6660 Physcomitrium patens HOM05D007052 ORTHO05D008871 3.5e-41 172.2 124 67.7
AagrBONN_evm.TU.Sc2ySwM_117.3173 Anthoceros agrestis HOM05D007052 ORTHO05D008871 1.5e-39 166.8 125 63.2
CiPaw.09G097200 Carya illinoinensis HOM05D007052 ORTHO05D008871 7.4e-39 164.5 121 70.2
RcHm_v2.0_Chr5g0002341 Rosa chinensis HOM05D007052 ORTHO05D008871 2.1e-38 162.9 177 52.5
Prupe.4G016000 Prunus persica HOM05D007052 ORTHO05D008871 4.0e-37 158.7 128 67.2
SMO118G0387 Selaginella moellendorffii HOM05D007052 ORTHO05D008871 6.9e-37 157.9 121 59.5
Nn1g07250 Nelumbo nucifera HOM05D007052 ORTHO05D008871 9.0e-37 157.5 92 81.5
SalBow8G1921 Salvia bowleyana HOM05D007052 ORTHO05D008871 3.5e-33 145.6 103 67.0
Psat1g177840 Pisum sativum HOM05D007052 ORTHO05D008871 6.0e-33 144.8 122 60.7
Atru.chr10.2273 Acer truncatum HOM05D007052 ORTHO05D008871 2.5e-31 139.4 122 59.8
Thhalv10029002m.g Eutrema salsugineum HOM05D007052 ORTHO05D008871 8.2e-30 134.4 87 73.6
RcHm_v2.0_Chr7g0236991 Rosa chinensis HOM05D007052 ORTHO05D008871 2.4e-29 132.9 165 49.1
arahy.Tifrunner.gnm1.ann1.ZUMJ7A Arachis hypogaea HOM05D007052 ORTHO05D008871 3.8e-27 125.6 120 55.8
Gorai.010G183200 Gossypium raimondii HOM05D007052 ORTHO05D008871 9.3e-26 120.9 168 44.6
BcaC04g21271 Brassica carinata HOM05D004489 ORTHO05D039740 6.1e-25 118.2 89 67.4
Zm00001eb179210 Zea mays HOM05D007052 ORTHO05D008871 7.4e-23 111.3 100 60.0
Cre07.g339000 Chlamydomonas reinhardtii HOM05D007052 ORTHO05D008871 7.2e-18 94.7 125 42.4
Nitab4.5_0001409g0190 Nicotiana tabacum HOM05D007052 ORTHO05D008871 9.4e-18 94.4 83 59.0
FAN21G0414 Fragaria x ananassa HOM05D007052 ORTHO05D008871 1.0e-16 90.9 81 61.7
RcHm_v2.0_Chr5g0002331 Rosa chinensis HOM05D007052 ORTHO05D008871 2.3e-16 89.7 50 84.0
Cre01.g030350 Chlamydomonas reinhardtii HOM05D007052 ORTHO05D008871 2.2e-14 83.2 123 40.7
FAN25G3667 Fragaria x ananassa HOM05D007052 ORTHO05D008871 4.8e-14 82.0 44 86.4
MSTRG.7177 Avicennia marina HOM05D007052 ORTHO05D008871 1.1e-13 80.9 48 77.1
PRCOL_00003846 Prasinoderma coloniale HOM05D007052 ORTHO05D008871 1.8e-13 80.1 138 34.8
MCO13G382 Micromonas commoda HOM05D007052 ORTHO05D008871 5.9e-12 75.1 184 30.4
PRCOL_00004464 Prasinoderma coloniale HOM05D007052 ORTHO05D008871 1.4e-08 63.9 119 32.8
Nitab4.5_0007209g0010 Nicotiana tabacum HOM05D007052 ORTHO05D008871 8.8e-08 61.2 39 66.7
PRCOL_00003373 Prasinoderma coloniale HOM05D007052 ORTHO05D008871 7.4e-07 58.2 128 30.5


User provided reference genes

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