Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g01210 Coffea canephora HOM05D000015 ORTHO05D154434 5.9e-42 173.7 83 100.0
Cc09_g01240 Coffea canephora HOM05D000015 ORTHO05D009146 4.8e-12 74.3 41 82.9
CiPaw.10G074200 Carya illinoinensis HOM05D000015 ORTHO05D009146 1.1e-11 73.2 44 75.0
Nitab4.5_0000054g0120 Nicotiana tabacum HOM05D000015 ORTHO05D019576 4.1e-11 71.2 44 72.7
Nitab4.5_0007785g0010 Nicotiana tabacum HOM05D000015 ORTHO05D009146 4.1e-11 71.2 44 72.7
Gohir.A06G150800 Gossypium hirsutum HOM05D000015 ORTHO05D009146 2.7e-10 68.6 42 78.6
Solyc03g078200.3 Solanum lycopersicum HOM05D000015 ORTHO05D009146 2.7e-10 68.6 44 68.2
Dinv13936 Davidia involucrata HOM05D000015 ORTHO05D009146 5.9e-10 67.4 42 78.6
TAR627G0218 Trochodendron aralioides HOM05D000015 ORTHO05D009146 5.9e-10 67.4 43 76.7
MSTRG.7179 Avicennia marina HOM05D000015 ORTHO05D009146 7.7e-10 67.0 41 75.6
Cfa000165 Carpinus fangiana HOM05D000015 ORTHO05D009146 7.7e-10 67.0 42 69.0
Ciclev10014290m.g Citrus clementina HOM05D000015 ORTHO05D009146 7.7e-10 67.0 45 71.1
Haze_06854 Corylus avellana HOM05D000015 ORTHO05D009146 7.7e-10 67.0 42 69.0
Sopen03g020930 Solanum pennellii HOM05D000015 ORTHO05D009146 7.7e-10 67.0 44 65.9
Actinidia26881 Actinidia chinensis HOM05D000015 ORTHO05D009146 1.0e-09 66.6 43 74.4
Gohir.D06G157000 Gossypium hirsutum HOM05D000015 ORTHO05D009146 1.3e-09 66.2 42 76.2
Gorai.010G183500 Gossypium raimondii HOM05D000015 ORTHO05D009146 1.3e-09 66.2 42 76.2
Manes.17G027600 Manihot esculenta HOM05D000015 ORTHO05D009146 1.3e-09 66.2 45 71.1
Duzib160G0860 Durio zibethinus HOM05D000015 ORTHO05D009146 2.2e-09 65.5 45 68.9
COL.COLO4_31829 Corchorus olitorius HOM05D001347 ORTHO05D009146 2.9e-09 65.1 41 73.2
Migut.M01372 Erythranthe guttata HOM05D000015 ORTHO05D009146 5.0e-09 64.3 41 70.7
vmacro03667 Vaccinium macrocarpon HOM05D000015 ORTHO05D009146 8.5e-09 63.5 42 71.4
FvH4_3g01420 Fragaria vesca HOM05D000015 ORTHO05D009146 1.1e-08 63.2 43 74.4
FAN21G0890 Fragaria x ananassa HOM05D001347 ORTHO05D009146 1.1e-08 63.2 43 74.4
FAN25G2248 Fragaria x ananassa HOM05D001347 ORTHO05D009146 1.1e-08 63.2 43 74.4
Lsat_1_v5_gn_7_15100 Lactuca sativa HOM05D000015 ORTHO05D009146 1.5e-08 62.8 45 68.9
Nn1g03398 Nelumbo nucifera HOM05D000015 ORTHO05D009146 1.5e-08 62.8 43 72.1
Lj1A1236G69 Lonicera japonica HOM05D000015 ORTHO05D009146 1.9e-08 62.4 44 70.5
Rhsim13G0150400 Rhododendron simsii HOM05D000015 ORTHO05D009146 1.9e-08 62.4 42 71.4
Lsat_1_v5_gn_7_15080 Lactuca sativa HOM05D000015 ORTHO05D009146 3.2e-08 61.6 43 69.8
Sabra11G0008100 Salix brachista HOM05D000015 ORTHO05D009146 3.2e-08 61.6 43 69.8
QL03p004924 Quercus lobata HOM05D000015 ORTHO05D009146 5.5e-08 60.8 41 65.9
QL05p071991 Quercus lobata HOM05D000015 ORTHO05D009146 5.5e-08 60.8 41 65.9
GSVIVG01004808001 Vitis vinifera HOM05D000015 ORTHO05D009146 5.5e-08 60.8 54 57.4
CANSAT56G2899 Cannabis sativa HOM05D000015 ORTHO05D009146 7.2e-08 60.5 42 69.0
RcHm_v2.0_Chr5g0002151 Rosa chinensis HOM05D000015 ORTHO05D009146 1.2e-07 59.7 43 69.8
RcHm_v2.0_Chr5g0002191 Rosa chinensis HOM05D000015 ORTHO05D009146 2.1e-07 58.9 43 69.8
VMungo1215G0634 Vigna mungo HOM05D000015 ORTHO05D009146 2.7e-07 58.5 43 65.1
Peaxi162Scf01184g00144 Petunia axillaris HOM05D000015 ORTHO05D009146 3.6e-07 58.2 45 60.0
Prupe.4G015500 Prunus persica HOM05D000015 ORTHO05D009146 3.6e-07 58.2 44 70.5
Cpa.g.sc152.53 Carica papaya HOM05D000015 ORTHO05D009146 4.7e-07 57.8 42 69.0
Eucgr.D01361 Eucalyptus grandis HOM05D000015 ORTHO05D009146 4.7e-07 57.8 43 67.4
CSS0000708 Camellia sinensis var. sinensis HOM05D000015 ORTHO05D009146 6.1e-07 57.4 44 61.4
Ca_21061_v3 Cicer arietinum L. HOM05D000015 ORTHO05D009146 6.1e-07 57.4 43 65.1
Lj4g0012750 Lotus japonicus HOM05D000015 ORTHO05D009146 6.1e-07 57.4 44 63.6
Lj5g0023536 Lotus japonicus HOM05D000015 ORTHO05D009146 6.1e-07 57.4 44 63.6
Medtr4g132620 Medicago truncatula HOM05D000015 ORTHO05D009146 6.1e-07 57.4 43 65.1
Glyma.07G263500 Glycine max HOM05D000015 ORTHO05D009146 8.0e-07 57.0 43 65.1
MD10G1326200 Malus domestica HOM05D000015 ORTHO05D009146 1.0e-06 56.6 43 69.8
Psat4g004240 Pisum sativum HOM05D000015 ORTHO05D009146 1.0e-06 56.6 43 62.8
DCAR_028343 Daucus carota HOM05D000015 ORTHO05D009146 1.4e-06 56.2 42 61.9
ECA236G1637 Erigeron canadensis HOM05D000015 ORTHO05D009146 1.8e-06 55.8 56 53.6
CAN.G30.17 Capsicum annuum HOM05D000015 ORTHO05D019576 3.0e-06 55.1 28 85.7
Lalb_Chr13g0304301 Lupinus albus HOM05D000015 ORTHO05D009146 3.0e-06 55.1 42 66.7
Phvul.003G081700 Phaseolus vulgaris HOM05D000015 ORTHO05D009146 3.0e-06 55.1 42 59.5
SalBow8G2292 Salvia bowleyana HOM05D000015 ORTHO05D009146 3.0e-06 55.1 41 56.1
PSO541G1228 Papaver somniferum HOM05D000015 ORTHO05D009146 5.2e-06 54.3 42 61.9
PGR004G1281 Punica granatum HOM05D000015 ORTHO05D009146 6.8e-06 53.9 42 61.9
ATR0059G019 Amborella trichopoda HOM05D000015 ORTHO05D019576 8.8e-06 53.5 41 56.1


User provided reference genes

Program Settings