Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g00910 Coffea canephora HOM05D005487 ORTHO05D007280 3.4e-255 884.4 421 100.0
Oeu044422.1 Olea europaea HOM05D005487 ORTHO05D007280 7.2e-221 770.4 421 84.1
CSS0007892 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 3.9e-219 764.6 418 84.4
Nitab4.5_0000143g0260 Nicotiana tabacum HOM05D005487 ORTHO05D007280 3.3e-218 761.5 418 84.0
QL05p069756 Quercus lobata HOM05D005487 ORTHO05D007280 9.7e-218 760.0 418 84.0
Nitab4.5_0001198g0060 Nicotiana tabacum HOM05D005487 ORTHO05D007280 2.8e-217 758.4 418 84.2
Lj2C262G3 Lonicera japonica HOM05D005487 ORTHO05D007280 9.1e-216 753.4 413 83.8
Hma1.2p1_0135F.1_g061730 Hydrangea macrophylla HOM05D005487 ORTHO05D007280 1.6e-215 752.7 417 83.5
CiPaw.10G077700 Carya illinoinensis HOM05D005487 ORTHO05D007280 2.6e-215 751.9 418 81.6
Potri.006G009200 Populus trichocarpa HOM05D005487 ORTHO05D007280 2.6e-215 751.9 418 82.3
Nn1g07355 Nelumbo nucifera HOM05D005487 ORTHO05D007280 3.5e-215 751.5 418 82.5
Solyc11g012160.2 Solanum lycopersicum HOM05D005487 ORTHO05D007280 5.9e-215 750.7 418 82.5
Sopen11g006950 Solanum pennellii HOM05D005487 ORTHO05D007280 1.3e-214 749.6 418 82.8
Actinidia11881 Actinidia chinensis HOM05D005487 ORTHO05D007280 1.7e-214 749.2 418 82.8
Actinidia26862 Actinidia chinensis HOM05D005487 ORTHO05D007280 2.2e-214 748.8 418 81.3
RcHm_v2.0_Chr5g0001571 Rosa chinensis HOM05D005487 ORTHO05D007280 6.5e-214 747.3 417 81.3
TWI38G0871 Tripterygium wilfordii HOM05D005487 ORTHO05D007280 6.5e-214 747.3 418 82.3
FvH4_3g01030 Fragaria vesca HOM05D005487 ORTHO05D007280 5.5e-213 744.2 417 81.5
Cfa000109 Carpinus fangiana HOM05D005487 ORTHO05D007280 7.2e-213 743.8 418 81.6
Peaxi162Scf00558g00518 Petunia axillaris HOM05D005487 ORTHO05D007280 2.1e-212 742.3 458 77.1
HanXRQChr10g0284101 Helianthus annuus HOM05D005487 ORTHO05D007280 3.6e-212 741.5 420 81.7
CAN.G1186.29 Capsicum annuum HOM05D005487 ORTHO05D007280 6.1e-212 740.7 419 82.6
SalBow8G2024 Salvia bowleyana HOM05D005487 ORTHO05D007280 8.0e-212 740.3 418 81.1
TAR629G3393 Trochodendron aralioides HOM05D005487 ORTHO05D007280 1.4e-211 739.6 418 81.3
Manes.09G070300 Manihot esculenta HOM05D005487 ORTHO05D007280 4.0e-211 738.0 418 80.6
FAN21G2054 Fragaria x ananassa HOM05D005487 ORTHO05D007280 1.5e-210 736.1 417 80.8
TAR724G0004 Trochodendron aralioides HOM05D005487 ORTHO05D007280 1.5e-210 736.1 418 81.3
PSO764G0115 Papaver somniferum HOM05D005487 ORTHO05D007280 2.0e-210 735.7 418 80.9
GSVIVG01003351001 Vitis vinifera HOM05D005487 ORTHO05D007280 2.6e-210 735.3 419 80.9
EL10Ac8g20177 Beta vulgaris HOM05D005487 ORTHO05D007280 3.3e-210 734.9 418 80.1
MSTRG.16025 Avicennia marina HOM05D005487 ORTHO05D007280 5.7e-210 734.2 418 80.9
Nn1g03329 Nelumbo nucifera HOM05D005487 ORTHO05D007280 9.7e-210 733.4 419 80.4
MBI19_g29429_MAGBIO Magnolia biondii HOM05D005487 ORTHO05D007280 3.7e-209 731.5 418 79.9
PSO210G3736 Papaver somniferum HOM05D005487 ORTHO05D007280 3.7e-209 731.5 417 80.6
Thecc.06G232800 Theobroma cacao HOM05D005487 ORTHO05D007280 3.7e-209 731.5 418 80.4
CANSAT56G2574 Cannabis sativa HOM05D005487 ORTHO05D007280 4.8e-209 731.1 417 79.6
Ciclev10015367m.g Citrus clementina HOM05D005487 ORTHO05D007280 1.1e-208 729.9 419 80.2
Duzib192G1033 Durio zibethinus HOM05D005487 ORTHO05D007280 2.4e-208 728.8 417 80.8
PGR004G0814 Punica granatum HOM05D005487 ORTHO05D007280 2.4e-208 728.8 418 79.4
AL1G23300 Arabidopsis lyrata HOM05D005487 ORTHO05D007280 5.3e-208 727.6 416 79.1
Atru.chr1.2460 Acer truncatum HOM05D005487 ORTHO05D007280 7.0e-208 727.2 418 79.9
Thhalv10007724m.g Eutrema salsugineum HOM05D005487 ORTHO05D007280 9.1e-208 726.9 416 79.3
BcaB02g06431 Brassica carinata HOM05D005487 ORTHO05D007280 1.2e-207 726.5 417 79.1
Lsat_1_v5_gn_8_64401 Lactuca sativa HOM05D005487 ORTHO05D007280 1.6e-207 726.1 424 79.5
AT1G12050 Arabidopsis thaliana HOM05D005487 ORTHO05D007280 4.5e-207 724.5 416 78.8
BolC5t29858H Brassica oleracea HOM05D005487 ORTHO05D007280 4.5e-207 724.5 416 78.8
Sp1g10720 Schrenkiella parvula HOM05D005487 ORTHO05D007280 5.9e-207 724.2 416 78.8
Dinv07399 Davidia involucrata HOM05D005487 ORTHO05D007280 7.7e-207 723.8 400 83.2
MD10G1331100 Malus domestica HOM05D005487 ORTHO05D007280 1.0e-206 723.4 416 79.3
arahy.Tifrunner.gnm1.ann1.8PBE23 Arachis hypogaea HOM05D005487 ORTHO05D007280 1.3e-206 723.0 419 76.6
Sopen04g006840 Solanum pennellii HOM05D005487 ORTHO05D007280 1.3e-206 723.0 418 79.4
Aqoxy1G04106 Aquilegia oxysepala HOM05D005487 ORTHO05D007280 1.7e-206 722.6 422 79.4
Rhsim13G0146300 Rhododendron simsii HOM05D005487 ORTHO05D007280 1.7e-206 722.6 445 76.6
Sed0025030 Sechium edule HOM05D005487 ORTHO05D007280 3.8e-206 721.5 418 77.8
AUR62021869 Chenopodium quinoa HOM05D005487 ORTHO05D007280 5.0e-206 721.1 419 78.8
ClCG01G021500 Citrullus lanatus HOM05D005487 ORTHO05D007280 5.0e-206 721.1 419 79.0
arahy.Tifrunner.gnm1.ann1.61KG5W Arachis hypogaea HOM05D005487 ORTHO05D007280 6.5e-206 720.7 419 76.4
RhsimUnG0109400 Rhododendron simsii HOM05D005487 ORTHO05D007280 6.5e-206 720.7 445 76.4
THA.LOC104809472 Tarenaya hassleriana HOM05D005487 ORTHO05D007280 6.5e-206 720.7 416 79.3
Carub.0001s1173 Capsella rubella HOM05D005487 ORTHO05D007280 1.1e-205 719.9 416 78.1
PGSC0003DMG400023608 Solanum tuberosum HOM05D005487 ORTHO05D007280 1.9e-205 719.2 418 78.9
Phvul.006G143500 Phaseolus vulgaris HOM05D005487 ORTHO05D007280 5.5e-205 717.6 417 77.5
Cpa.g.sc75.119 Carica papaya HOM05D005487 ORTHO05D007280 1.2e-204 716.5 417 78.9
Prupe.4G011100 Prunus persica HOM05D005487 ORTHO05D007280 1.2e-204 716.5 418 78.2
CARHR012410 Cardamine hirsuta HOM05D005487 ORTHO05D007280 2.1e-204 715.7 416 77.2
Lalb_Chr15g0087971 Lupinus albus HOM05D005487 ORTHO05D007280 8.0e-204 713.8 417 76.7
Gohir.A05G174500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.8e-203 712.6 417 79.1
Gorai.010G250300 Gossypium raimondii HOM05D005487 ORTHO05D007280 2.3e-203 712.2 417 77.9
PGSC0003DMG400013273 Solanum tuberosum HOM05D005487 ORTHO05D007280 3.0e-203 711.8 503 68.6
Aa31LG1G2680 Aethionema arabicum HOM05D005487 ORTHO05D007280 4.0e-203 711.4 416 77.2
Gohir.A06G205600 Gossypium hirsutum HOM05D005487 ORTHO05D007280 4.0e-203 711.4 417 77.7
CsaV3_6G048520 Cucumis sativus L. HOM05D005487 ORTHO05D007280 5.2e-203 711.1 420 76.9
COL.COLO4_31878 Corchorus olitorius HOM05D005487 ORTHO05D007280 6.8e-203 710.7 415 79.0
Gorai.009G182900 Gossypium raimondii HOM05D005487 ORTHO05D007280 6.8e-203 710.7 417 78.9
Psat1g176520 Pisum sativum HOM05D005487 ORTHO05D007280 6.8e-203 710.7 417 76.0
CAN.G1263.14 Capsicum annuum HOM05D005487 ORTHO05D007280 1.2e-202 709.9 419 78.3
Gohir.D06G215900 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.2e-202 709.9 417 77.7
Peaxi162Scf00442g00414 Petunia axillaris HOM05D005487 ORTHO05D007280 2.0e-202 709.1 458 72.1
VMungo0540G1792 Vigna mungo HOM05D005487 ORTHO05D007280 2.6e-202 708.8 417 76.0
Solyc04g014730.4 Solanum lycopersicum HOM05D005487 ORTHO05D007280 3.4e-202 708.4 412 78.6
Ca_00719_v3 Cicer arietinum L. HOM05D005487 ORTHO05D007280 5.7e-202 707.6 415 76.9
MELO3C007433.2 Cucumis melo HOM05D005487 ORTHO05D007280 7.5e-202 707.2 419 76.8
Glyma.15G114300 Glycine max HOM05D005487 ORTHO05D007280 7.5e-202 707.2 417 75.1
Eucgr.L00543 Eucalyptus grandis HOM05D005487 ORTHO05D007280 3.7e-201 704.9 451 72.9
Glyma.09G010000 Glycine max HOM05D005487 ORTHO05D007280 3.7e-201 704.9 417 76.0
Gohir.D05G177500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 6.3e-201 704.1 417 78.2
Medtr2g025640 Medicago truncatula HOM05D005487 ORTHO05D007280 6.3e-201 704.1 415 74.9
TPR.G13057 Trifolium pratense HOM05D005487 ORTHO05D007280 4.1e-200 701.4 417 74.8
Lj6g0015557 Lotus japonicus HOM05D005487 ORTHO05D007280 9.1e-200 700.3 415 75.4
FAN25G0861 Fragaria x ananassa HOM05D005487 ORTHO05D007280 2.7e-199 698.7 397 80.6
SGA_v2.0_scaffold7G03757 Striga asiatica HOM05D005487 ORTHO05D007280 1.3e-198 696.4 429 76.9
BcaC05g25225 Brassica carinata HOM05D005487 ORTHO05D007280 7.2e-197 690.6 402 78.1
HPP92_003014 Vanilla planifolia HOM05D005487 ORTHO05D007280 9.5e-197 690.3 425 73.9
A06p09440 Brassica napus HOM05D005487 ORTHO05D007280 3.6e-196 688.3 401 78.3
C05p11110 Brassica napus HOM05D005487 ORTHO05D007280 3.6e-196 688.3 402 77.9
BraA06t24129Z Brassica rapa HOM05D005487 ORTHO05D007280 8.0e-196 687.2 401 78.1
HPP92_027542 Vanilla planifolia HOM05D005487 ORTHO05D007280 4.0e-195 684.9 426 73.9
vmacro03645 Vaccinium macrocarpon HOM05D005487 ORTHO05D007280 6.8e-195 684.1 404 79.5
Hund23409 Selenicereus undatus HOM05D005487 ORTHO05D007280 3.5e-191 671.8 395 77.0
Haze_06922 Corylus avellana HOM05D005487 ORTHO05D007280 7.8e-191 670.6 432 73.8
unitig_0.g999 Utricularia gibba HOM05D005487 ORTHO05D007280 1.5e-189 666.4 387 78.6
Os02g0196800 Oryza sativa ssp. japonica HOM05D005487 ORTHO05D007280 1.9e-189 666.0 420 70.5
ATR1101G021 Amborella trichopoda HOM05D005487 ORTHO05D007280 4.3e-189 664.8 419 73.3
Zm00001eb236160 Zea mays HOM05D005487 ORTHO05D007280 2.8e-188 662.1 418 70.3
Haze_06917 Corylus avellana HOM05D005487 ORTHO05D007280 8.0e-188 660.6 456 69.7
CDE07G0927 Ceratophyllum demersum HOM05D005487 ORTHO05D007280 4.0e-187 658.3 431 72.6
DCAR_027826 Daucus carota HOM05D005487 ORTHO05D007280 4.9e-185 651.4 418 73.0
Sabra06G0007000 Salix brachista HOM05D005487 ORTHO05D007280 2.8e-180 635.6 418 72.2
AUR62012785 Chenopodium quinoa HOM05D005487 ORTHO05D007280 9.2e-176 620.5 401 72.8
Migut.M01391 Erythranthe guttata HOM05D005487 ORTHO05D007280 3.9e-166 588.6 418 68.4
Duzib235G0086 Durio zibethinus HOM05D005487 ORTHO05D007280 6.8e-163 577.8 371 73.6
Pp3c4_7990 Physcomitrium patens HOM05D005487 ORTHO05D007280 2.6e-162 575.9 418 64.6
AagrBONN_evm.TU.Sc2ySwM_344.3343 Anthoceros agrestis HOM05D005487 ORTHO05D007280 3.4e-162 575.5 418 64.1
SMO137G0224 Selaginella moellendorffii HOM05D005487 ORTHO05D007280 8.4e-161 570.9 417 65.0
Sc17g0007720 Simmondsia chinensis HOM05D005487 ORTHO05D007280 2.7e-159 565.8 303 84.2
Zm00001eb205930 Zea mays HOM05D005487 ORTHO05D007280 3.9e-158 562.0 358 70.9
Mapoly0022s0035 Marchantia polymorpha HOM05D005487 ORTHO05D007280 1.1e-157 560.5 416 61.1
CSS0007230 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 2.5e-157 559.3 437 65.9
Ah.09g234260 Amaranthus hybridus HOM05D005487 ORTHO05D007280 4.0e-155 552.0 418 64.8
Pp3c13_16620 Physcomitrium patens HOM05D005487 ORTHO05D007280 7.1e-144 514.6 358 66.5
Haze_26411 Corylus avellana HOM05D005487 ORTHO05D007280 2.4e-136 489.6 421 53.2
ECA236G3803 Erigeron canadensis HOM05D005487 ORTHO05D007280 7.1e-136 488.0 271 81.9
RcHm_v2.0_Chr3g0477951 Rosa chinensis HOM05D005487 ORTHO05D007280 1.3e-124 450.7 464 52.4
RcHm_v2.0_Chr3g0484131 Rosa chinensis HOM05D005487 ORTHO05D007280 9.0e-123 444.5 463 52.1
CBR_g46703 Chara braunii HOM05D005487 ORTHO05D007280 7.6e-122 441.4 468 48.1
Cre17.g732802 Chlamydomonas reinhardtii HOM05D005487 ORTHO05D007280 3.0e-118 429.5 469 47.3
PRCOL_00001448 Prasinoderma coloniale HOM05D005487 ORTHO05D007280 1.1e-107 394.4 425 49.2
Gorai.001G209700 Gossypium raimondii HOM05D005487 ORTHO05D007280 7.3e-48 195.7 115 74.8
SEGI_36702 Sequoiadendron giganteum HOM05D005487 ORTHO05D007280 8.7e-33 145.6 93 71.0
Gohir.D07G188750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 8.1e-31 139.0 115 57.4
C06p15210 Brassica napus HOM05D005487 ORTHO05D042797 9.0e-30 135.6 89 68.5
BolC6t36696H Brassica oleracea HOM05D005487 ORTHO05D042797 9.0e-30 135.6 89 68.5
RcHm_v2.0_Chr5g0003621 Rosa chinensis HOM05D005487 ORTHO05D007280 9.9e-29 132.1 80 75.0
COL.COLO4_27266 Corchorus olitorius HOM05D000025 ORTHO05D000040 2.9e-20 104.0 136 45.6
BcaC08g44100 Brassica carinata HOM05D005487 ORTHO05D027150 1.0e-17 95.5 69 62.3
BolC9t55424H Brassica oleracea HOM05D005487 ORTHO05D027150 1.0e-17 95.5 66 65.2
Gohir.D13G151750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 2.3e-17 94.4 55 76.4
BcaC04g21976 Brassica carinata HOM05D005487 ORTHO05D027150 6.7e-17 92.8 66 63.6
C09p25260 Brassica napus HOM05D005487 ORTHO05D027150 7.4e-16 89.4 64 62.5
SEGI_21127 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 6.7e-09 66.2 68 47.1
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 4.8e-07 60.1 122 34.4
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 6.3e-07 59.7 121 32.2
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 6.3e-07 59.7 166 28.9
CAN.G327.2 Capsicum annuum HOM05D001287 ORTHO05D010951 6.9e-06 56.2 30 76.7


User provided reference genes

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