Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g00840 Coffea canephora HOM05D003856 ORTHO05D004547 2.3e-134 482.3 248 100.0
CAN.G449.18 Capsicum annuum HOM05D003856 ORTHO05D004547 3.2e-128 461.8 248 94.8
Lj2A261T38 Lonicera japonica HOM05D003856 ORTHO05D004547 2.1e-127 459.1 248 95.6
Nitab4.5_0004406g0030 Nicotiana tabacum HOM05D003856 ORTHO05D004547 6.1e-127 457.6 248 94.0
Sopen05g032590 Solanum pennellii HOM05D003856 ORTHO05D004547 1.0e-126 456.8 248 93.1
PGSC0003DMG400008443 Solanum tuberosum HOM05D003856 ORTHO05D004547 1.0e-126 456.8 248 93.1
Actinidia02310 Actinidia chinensis HOM05D003856 ORTHO05D004547 1.4e-126 456.4 248 94.8
Thecc.06G233900 Theobroma cacao HOM05D003856 ORTHO05D004547 3.9e-126 454.9 246 93.5
CSS0032798 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 5.1e-126 454.5 248 93.5
PGR004G0563 Punica granatum HOM05D003856 ORTHO05D004547 5.1e-126 454.5 246 93.9
TAR627G0499 Trochodendron aralioides HOM05D003856 ORTHO05D004547 5.1e-126 454.5 248 94.0
TAR627G1166 Trochodendron aralioides HOM05D003856 ORTHO05D004547 5.1e-126 454.5 248 94.0
Solyc05g054100.3 Solanum lycopersicum HOM05D003856 ORTHO05D004547 6.7e-126 454.1 248 92.7
Dinv07408 Davidia involucrata HOM05D003856 ORTHO05D004547 8.8e-126 453.8 247 94.3
Gohir.D10G008800 Gossypium hirsutum HOM05D003856 ORTHO05D004547 8.8e-126 453.8 248 93.5
Gorai.011G009600 Gossypium raimondii HOM05D003856 ORTHO05D004547 8.8e-126 453.8 248 93.5
Manes.08G069500 Manihot esculenta HOM05D003856 ORTHO05D004547 8.8e-126 453.8 248 93.5
Gohir.D10G008700 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.5e-125 453.0 248 93.5
Gorai.011G009500 Gossypium raimondii HOM05D003856 ORTHO05D004547 1.5e-125 453.0 248 93.5
Gohir.A10G009100 Gossypium hirsutum HOM05D003856 ORTHO05D004547 2.0e-125 452.6 248 93.1
TWI38G2230 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 2.0e-125 452.6 248 91.9
MBI16_g31714_MAGBIO Magnolia biondii HOM05D003856 ORTHO05D004547 2.6e-125 452.2 248 94.4
Duzib235G1167 Durio zibethinus HOM05D003856 ORTHO05D004547 3.3e-125 451.8 246 92.7
Actinidia26855 Actinidia chinensis HOM05D003856 ORTHO05D004547 5.7e-125 451.1 248 94.0
Aqoxy1G04060 Aquilegia oxysepala HOM05D003856 ORTHO05D004547 7.4e-125 450.7 248 92.3
Lsat_1_v5_gn_4_61900 Lactuca sativa HOM05D003856 ORTHO05D004547 1.3e-124 449.9 248 92.7
TAR626G0303 Trochodendron aralioides HOM05D003856 ORTHO05D004547 1.3e-124 449.9 248 92.7
ECA248G1273 Erigeron canadensis HOM05D003856 ORTHO05D004547 1.7e-124 449.5 248 92.3
HanXRQChr01g0006771 Helianthus annuus HOM05D003856 ORTHO05D004547 2.2e-124 449.1 247 92.7
Nn1g07399 Nelumbo nucifera HOM05D003856 ORTHO05D004547 2.2e-124 449.1 246 93.1
Sc17g0007760 Simmondsia chinensis HOM05D003856 ORTHO05D004547 2.2e-124 449.1 248 92.7
Migut.M01400 Erythranthe guttata HOM05D003856 ORTHO05D004547 4.8e-124 448.0 248 93.5
Cfa010272 Carpinus fangiana HOM05D003856 ORTHO05D004547 6.3e-124 447.6 248 92.3
Duzib192G0794 Durio zibethinus HOM05D003856 ORTHO05D004547 6.3e-124 447.6 246 92.3
Hund06997 Selenicereus undatus HOM05D003856 ORTHO05D004547 6.3e-124 447.6 248 91.9
Hma1.2p1_0657F.1_g197110 Hydrangea macrophylla HOM05D003856 ORTHO05D004547 8.2e-124 447.2 248 92.3
Atru.chr1.2436 Acer truncatum HOM05D003856 ORTHO05D004547 1.1e-123 446.8 246 91.1
Atru.chr1.2438 Acer truncatum HOM05D003856 ORTHO05D004547 1.1e-123 446.8 246 91.1
Gohir.A10G009000 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.4e-123 446.4 248 92.7
Cpa.g.sc75.112 Carica papaya HOM05D003856 ORTHO05D004547 2.4e-123 445.7 248 92.3
Eucgr.D01412 Eucalyptus grandis HOM05D003856 ORTHO05D004547 2.4e-123 445.7 246 91.1
Haze_06930 Corylus avellana HOM05D003856 ORTHO05D004547 4.1e-123 444.9 248 91.5
Rhsim02G0099500 Rhododendron simsii HOM05D003856 ORTHO05D004547 5.3e-123 444.5 270 85.6
ClCG01G010160 Citrullus lanatus HOM05D003856 ORTHO05D004547 7.0e-123 444.1 248 90.7
Ciclev10016420m.g Citrus clementina HOM05D003856 ORTHO05D004547 7.0e-123 444.1 246 91.9
CsaV3_1G017260 Cucumis sativus L. HOM05D003856 ORTHO05D004547 7.0e-123 444.1 248 90.3
Potri.006G011500 Populus trichocarpa HOM05D003856 ORTHO05D004547 7.0e-123 444.1 248 90.3
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 9.1e-123 443.7 248 91.5
arahy.Tifrunner.gnm1.ann1.ZZ9Q5Y Arachis hypogaea HOM05D003856 ORTHO05D004547 9.1e-123 443.7 248 91.5
CiPaw.09G102800 Carya illinoinensis HOM05D003856 ORTHO05D004547 1.2e-122 443.4 244 92.2
CiPaw.10G078300 Carya illinoinensis HOM05D003856 ORTHO05D004547 1.2e-122 443.4 244 91.8
arahy.Tifrunner.gnm1.ann1.D1JSNC Arachis hypogaea HOM05D003856 ORTHO05D004547 1.5e-122 443.0 248 91.1
Lsat_1_v5_gn_0_29081 Lactuca sativa HOM05D003856 ORTHO05D004547 1.5e-122 443.0 248 91.1
arahy.Tifrunner.gnm1.ann1.GCV40F Arachis hypogaea HOM05D003856 ORTHO05D004547 2.0e-122 442.6 248 90.7
RcHm_v2.0_Chr5g0001451 Rosa chinensis HOM05D003856 ORTHO05D004547 2.6e-122 442.2 246 91.5
Potri.016G013100 Populus trichocarpa HOM05D003856 ORTHO05D004547 3.4e-122 441.8 248 89.9
THA.LOC104813601 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 3.4e-122 441.8 246 91.1
Lj5g0025471 Lotus japonicus HOM05D003856 ORTHO05D004547 4.5e-122 441.4 248 91.1
SalBow8G1854 Salvia bowleyana HOM05D003856 ORTHO05D004547 4.5e-122 441.4 246 91.5
HanXRQChr10g0285161 Helianthus annuus HOM05D003856 ORTHO05D004547 5.9e-122 441.0 247 90.3
Sed0028227 Sechium edule HOM05D003856 ORTHO05D004547 5.9e-122 441.0 248 89.9
THA.LOC104812995 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 5.9e-122 441.0 248 90.7
Glyma.08G331200 Glycine max HOM05D003856 ORTHO05D004547 7.7e-122 440.7 248 90.7
SalBow1G0666 Salvia bowleyana HOM05D003856 ORTHO05D004547 7.7e-122 440.7 246 91.9
Sed0026067 Sechium edule HOM05D003856 ORTHO05D004547 7.7e-122 440.7 248 90.3
FvH4_3g00930 Fragaria vesca HOM05D003856 ORTHO05D004547 1.0e-121 440.3 246 90.7
FAN25G1896 Fragaria x ananassa HOM05D003856 ORTHO05D004547 1.0e-121 440.3 246 90.7
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 1.3e-121 439.9 246 92.3
MD05G1358200 Malus domestica HOM05D003856 ORTHO05D004547 1.7e-121 439.5 245 91.8
Nitab4.5_0001735g0170 Nicotiana tabacum HOM05D003856 ORTHO05D004547 1.7e-121 439.5 248 90.7
Glyma.18G075400 Glycine max HOM05D003856 ORTHO05D004547 2.2e-121 439.1 248 90.3
SGA_v2.0_scaffold4G01871 Striga asiatica HOM05D003856 ORTHO05D004547 2.2e-121 439.1 247 91.5
Prupe.4G009900 Prunus persica HOM05D003856 ORTHO05D004547 3.8e-121 438.3 245 91.4
QL05p069616 Quercus lobata HOM05D003856 ORTHO05D004547 3.8e-121 438.3 247 89.9
CANSAT56G3590 Cannabis sativa HOM05D003856 ORTHO05D004547 5.0e-121 438.0 246 90.2
MD10G1332300 Malus domestica HOM05D003856 ORTHO05D004547 5.0e-121 438.0 245 91.4
Ah.14g087610 Amaranthus hybridus HOM05D003856 ORTHO05D004547 8.5e-121 437.2 246 89.8
VMungo0540G0895 Vigna mungo HOM05D003856 ORTHO05D004547 1.4e-120 436.4 248 89.5
Lalb_Chr02g0149201 Lupinus albus HOM05D003856 ORTHO05D004547 4.2e-120 434.9 248 89.9
Phvul.006G059000 Phaseolus vulgaris HOM05D003856 ORTHO05D004547 5.5e-120 434.5 248 89.5
FAN21G0260 Fragaria x ananassa HOM05D003856 ORTHO05D004547 7.2e-120 434.1 251 88.8
EL10Ac8g20193 Beta vulgaris HOM05D003856 ORTHO05D004547 1.6e-119 433.0 245 90.6
Ca_10008_v3 Cicer arietinum L. HOM05D003856 ORTHO05D004547 1.6e-119 433.0 249 89.2
MSTRG.7166 Avicennia marina HOM05D003856 ORTHO05D004547 2.1e-119 432.6 248 89.1
Lalb_Chr06g0168331 Lupinus albus HOM05D003856 ORTHO05D004547 2.1e-119 432.6 246 89.4
BcaB03g11729 Brassica carinata HOM05D003856 ORTHO05D004547 2.7e-119 432.2 246 90.2
C01p16660 Brassica napus HOM05D003856 ORTHO05D004547 3.6e-119 431.8 248 89.1
Oeu009395.1 Olea europaea HOM05D003856 ORTHO05D004547 3.6e-119 431.8 306 75.2
CDE04G3203 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 4.7e-119 431.4 248 87.9
CDE06G2351 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 4.7e-119 431.4 248 87.5
BcaC01g00774 Brassica carinata HOM05D003856 ORTHO05D004547 8.0e-119 430.6 248 89.5
A01p13750 Brassica napus HOM05D003856 ORTHO05D004547 8.0e-119 430.6 248 89.1
A08p15680 Brassica napus HOM05D003856 ORTHO05D004547 8.0e-119 430.6 248 89.5
A09p26760 Brassica napus HOM05D003856 ORTHO05D004547 8.0e-119 430.6 248 88.3
C09p33910 Brassica napus HOM05D003856 ORTHO05D004547 8.0e-119 430.6 248 88.3
BolC9t56227H Brassica oleracea HOM05D003856 ORTHO05D004547 8.0e-119 430.6 248 88.3
BraA01t01320Z Brassica rapa HOM05D003856 ORTHO05D004547 8.0e-119 430.6 248 89.1
BraA09t38248Z Brassica rapa HOM05D003856 ORTHO05D004547 8.0e-119 430.6 248 88.3
Aa31LG9G10060 Aethionema arabicum HOM05D003856 ORTHO05D004547 1.4e-118 429.9 246 88.6
C03p84130 Brassica napus HOM05D003856 ORTHO05D004547 1.8e-118 429.5 248 89.1
BolC3t20692H Brassica oleracea HOM05D003856 ORTHO05D004547 1.8e-118 429.5 248 89.1
AL7G31210 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 2.3e-118 429.1 246 88.6
AT4G12590 Arabidopsis thaliana HOM05D003856 ORTHO05D004547 2.3e-118 429.1 248 87.9
BraA08t33548Z Brassica rapa HOM05D003856 ORTHO05D004547 2.3e-118 429.1 248 89.1
Thhalv10026090m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 2.3e-118 429.1 248 88.7
Nn1g03306 Nelumbo nucifera HOM05D003856 ORTHO05D004547 2.3e-118 429.1 236 92.4
BcaC04g21245 Brassica carinata HOM05D003856 ORTHO05D004547 3.0e-118 428.7 248 87.9
BolC1t01613H Brassica oleracea HOM05D003856 ORTHO05D004547 3.9e-118 428.3 248 88.7
AL6G47550 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 6.7e-118 427.6 248 87.5
BcaB01g01755 Brassica carinata HOM05D003856 ORTHO05D004547 6.7e-118 427.6 248 87.5
TWI63G1684 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 6.7e-118 427.6 290 77.6
Sp7g20520 Schrenkiella parvula HOM05D003856 ORTHO05D004547 1.1e-117 426.8 248 88.3
DCAR_027821 Daucus carota HOM05D003856 ORTHO05D004547 2.0e-117 426.0 287 80.5
Carub.0006s3186 Capsella rubella HOM05D003856 ORTHO05D004547 7.4e-117 424.1 248 86.7
Thhalv10028913m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 7.4e-117 424.1 248 87.5
Psat6g143120 Pisum sativum HOM05D003856 ORTHO05D004547 7.4e-117 424.1 249 87.1
unitig_61.g26092 Utricularia gibba HOM05D003856 ORTHO05D004547 2.2e-116 422.5 262 84.4
CARHR229320 Cardamine hirsuta HOM05D003856 ORTHO05D004547 2.8e-116 422.2 249 87.6
PSO541G3298 Papaver somniferum HOM05D003856 ORTHO05D004547 8.2e-116 420.6 249 86.7
Medtr1g079890 Medicago truncatula HOM05D003856 ORTHO05D004547 1.1e-115 420.2 249 86.7
BcaC09g51102 Brassica carinata HOM05D003856 ORTHO05D004547 1.4e-115 419.9 249 87.6
Peaxi162Scf00990g00017 Petunia axillaris HOM05D003856 ORTHO05D004547 1.8e-115 419.5 248 87.9
PSO675G7111 Papaver somniferum HOM05D003856 ORTHO05D004547 2.4e-115 419.1 249 86.3
Sp6g04920 Schrenkiella parvula HOM05D003856 ORTHO05D004547 2.4e-115 419.1 248 85.9
TPR.G32278 Trifolium pratense HOM05D003856 ORTHO05D004547 4.1e-115 418.3 249 87.1
CARHR253580 Cardamine hirsuta HOM05D003856 ORTHO05D004547 5.3e-115 417.9 248 86.7
Zm00001eb102120 Zea mays HOM05D003856 ORTHO05D004547 5.5e-112 407.9 249 83.9
Mapoly0029s0061 Marchantia polymorpha HOM05D003856 ORTHO05D004547 3.6e-111 405.2 252 82.1
Sabra06G0009100 Salix brachista HOM05D003856 ORTHO05D004547 6.1e-111 404.4 335 67.5
Os09g0497400 Oryza sativa ssp. japonica HOM05D003856 ORTHO05D004547 3.3e-109 398.7 249 81.1
AagrBONN_evm.TU.Sc2ySwM_362.305 Anthoceros agrestis HOM05D003856 ORTHO05D004547 1.8e-107 392.9 246 80.5
GSVIVG01003331001 Vitis vinifera HOM05D003856 ORTHO05D004547 1.8e-107 392.9 209 93.8
GSVIVG01003337001 Vitis vinifera HOM05D003856 ORTHO05D004547 1.8e-107 392.9 209 93.8
Pp3c11_24600 Physcomitrium patens HOM05D003856 ORTHO05D004547 7.0e-107 391.0 252 79.0
SMO239G0047 Selaginella moellendorffii HOM05D003856 ORTHO05D004547 1.6e-106 389.8 254 78.0
Haze_06937 Corylus avellana HOM05D003856 ORTHO05D004547 4.5e-106 388.3 267 78.3
Sabra16G0002300 Salix brachista HOM05D003856 ORTHO05D004547 1.3e-105 386.7 381 58.3
Pp3c7_950 Physcomitrium patens HOM05D003856 ORTHO05D004547 5.0e-105 384.8 252 77.0
vmacro15762 Vaccinium macrocarpon HOM05D003856 ORTHO05D004547 2.0e-101 372.9 361 59.8
ATR0712G091 Amborella trichopoda HOM05D003856 ORTHO05D004547 6.3e-100 367.9 214 87.4
SHI24455 Sapria himalayana HOM05D003856 ORTHO05D004547 1.7e-92 343.2 246 73.6
Lj1C1240G8 Lonicera japonica HOM05D003856 ORTHO05D004547 6.3e-92 341.3 198 89.9
Gorai.013G129800 Gossypium raimondii HOM05D003856 ORTHO05D004547 4.5e-90 335.1 248 73.8
Nitab4.5_0003626g0020 Nicotiana tabacum HOM05D003856 ORTHO05D004547 1.4e-86 323.6 246 71.1
CSS0048239 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 2.7e-82 309.3 165 93.3
MELO3C021687.2 Cucumis melo HOM05D003856 ORTHO05D004547 2.7e-82 309.3 180 88.3
AUR62012797 Chenopodium quinoa HOM05D003856 ORTHO05D004547 4.3e-80 302.0 173 91.3
AUR62021855 Chenopodium quinoa HOM05D003856 ORTHO05D004547 9.5e-80 300.8 173 91.3
Lalb_Chr21g0311231 Lupinus albus HOM05D003856 ORTHO05D004547 6.2e-79 298.1 169 87.6
HPP92_000415 Vanilla planifolia HOM05D003856 ORTHO05D004547 2.8e-71 272.7 280 56.1
MCO07G661 Micromonas commoda HOM05D003856 ORTHO05D004547 4.9e-60 235.3 243 49.8
SEGI_40422 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 1.3e-57 227.3 139 82.7
Haze_26609 Corylus avellana HOM05D003856 ORTHO05D004547 1.9e-48 196.8 233 45.1
Gorai.012G047500 Gossypium raimondii HOM05D003856 ORTHO05D004547 3.3e-48 196.1 250 52.0
Cre09.g400400 Chlamydomonas reinhardtii HOM05D003856 ORTHO05D004547 6.9e-46 188.3 246 43.5
MD10G1332200 Malus domestica HOM05D003856 ORTHO05D004547 3.8e-44 182.6 100 90.0
SEGI_31097 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 2.3e-41 173.3 97 89.7
CSS0021523 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 3.1e-38 162.9 165 57.6
Carub.0007s1888 Capsella rubella HOM05D003856 ORTHO05D004547 3.1e-38 162.9 200 54.0
COL.COLO4_31891 Corchorus olitorius HOM05D003856 ORTHO05D004547 9.0e-30 134.8 139 56.1
Lalb_Chr21g0311241 Lupinus albus HOM05D003856 ORTHO05D004547 1.7e-28 130.6 83 81.9
C01p16690 Brassica napus HOM05D003856 ORTHO05D004547 1.9e-27 127.1 84 76.2
CARHR290760 Cardamine hirsuta HOM05D003856 ORTHO05D004547 6.7e-25 118.6 83 73.5
AL649U10020 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 2.5e-24 116.7 83 77.1
PRCOL_00006309 Prasinoderma coloniale HOM05D003856 ORTHO05D004547 3.3e-24 116.3 233 36.1
Carub.0008s0836 Capsella rubella HOM05D003856 ORTHO05D004547 1.8e-22 110.5 213 40.8
CBR_g38137 Chara braunii HOM05D003856 ORTHO05D004547 1.7e-20 104.0 100 50.0
Oeu040759.1 Olea europaea HOM05D003856 ORTHO05D004547 8.8e-17 91.7 52 88.5
COL.COLO4_31890 Corchorus olitorius HOM05D003856 ORTHO05D004547 1.1e-16 91.3 58 84.5
Migut.L00276 Erythranthe guttata HOM05D003856 ORTHO05D004547 2.0e-16 90.5 51 86.3
Hund21152 Selenicereus undatus HOM05D003856 ORTHO05D004547 6.9e-14 82.0 45 84.4
vmacro04321 Vaccinium macrocarpon HOM05D004428 ORTHO05D013648 9.1e-14 81.6 77 62.3
HPP92_000455 Vanilla planifolia HOM05D003856 ORTHO05D004547 3.4e-13 79.7 52 82.7
Dinv13969 Davidia involucrata HOM05D003856 ORTHO05D004547 2.9e-12 76.6 79 57.0
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 7.2e-11 72.0 38 86.8
Rhsim07G0218800 Rhododendron simsii HOM05D003856 ORTHO05D013648 6.1e-10 68.9 95 49.5
vmacro16921 Vaccinium macrocarpon HOM05D000007 ORTHO05D013648 3.0e-09 66.6 97 50.5
FAN07G2353 Fragaria x ananassa HOM05D003856 ORTHO05D004547 5.7e-08 62.4 45 77.8
A05p11440 Brassica napus HOM05D003856 ORTHO05D004547 1.7e-07 60.8 36 77.8
BraA05t20093Z Brassica rapa HOM05D003856 ORTHO05D004547 1.7e-07 60.8 36 77.8
Rhsim07G0218900 Rhododendron simsii HOM05D003856 ORTHO05D013648 2.8e-07 60.1 99 45.5
C04p14930 Brassica napus HOM05D003856 ORTHO05D004547 4.8e-07 59.3 36 75.0
vmacro22601 Vaccinium macrocarpon HOM05D003856 ORTHO05D426869 4.1e-06 56.2 90 48.9


User provided reference genes

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