Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 1.0e-271 939.5 477 100.0
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 7.9e-232 807.0 466 85.6
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 3.0e-231 805.1 462 86.6
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 1.5e-230 802.7 464 84.9
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 1.3e-229 799.7 462 85.1
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 3.6e-229 798.1 462 85.7
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 6.2e-229 797.3 462 85.7
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 5.3e-228 794.3 463 85.1
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 2.0e-227 792.3 462 85.1
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 9.9e-227 790.0 462 84.6
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 2.9e-226 788.5 462 84.6
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 1.1e-225 786.6 462 84.6
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.9e-225 785.8 462 84.4
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 6.7e-223 777.3 463 82.9
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 8.7e-223 776.9 468 82.3
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 1.1e-222 776.5 464 84.1
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 1.9e-222 775.8 462 84.4
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 7.4e-222 773.9 462 84.2
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 3.1e-220 768.5 458 83.6
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 9.0e-220 766.9 481 79.2
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.0e-219 765.8 453 83.2
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 7.6e-219 763.8 451 83.4
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.3e-218 763.1 464 80.6
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 2.2e-218 762.3 465 80.6
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 2.2e-218 762.3 463 81.0
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 2.9e-218 761.9 459 84.3
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 4.9e-218 761.1 452 83.4
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 2.5e-217 758.8 484 79.1
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 7.1e-217 757.3 484 78.3
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.2e-216 756.5 465 80.2
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 1.2e-216 756.5 484 78.5
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 2.7e-216 755.4 462 79.0
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 3.5e-216 755.0 462 82.9
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 4.6e-216 754.6 462 79.9
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 1.0e-215 753.4 461 80.0
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 1.0e-215 753.4 435 86.2
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 1.8e-215 752.7 464 80.4
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 2.3e-215 752.3 453 81.7
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 2.3e-215 752.3 454 82.8
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 3.0e-215 751.9 463 81.9
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 3.9e-215 751.5 463 81.9
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 5.1e-215 751.1 460 82.0
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 6.7e-215 750.7 459 82.6
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 6.7e-215 750.7 459 82.6
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 6.7e-215 750.7 459 82.6
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 1.1e-214 750.0 459 82.8
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 1.9e-214 749.2 462 82.5
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 2.5e-214 748.8 463 81.6
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 3.3e-214 748.4 463 81.4
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 3.3e-214 748.4 461 82.6
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 4.3e-214 748.0 467 81.6
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 4.3e-214 748.0 467 79.7
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 7.4e-214 747.3 463 81.2
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 1.6e-213 746.1 463 79.3
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 2.1e-213 745.7 462 81.6
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 2.8e-213 745.3 464 78.9
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 2.8e-213 745.3 461 79.6
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 2.8e-213 745.3 463 78.8
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 3.7e-213 745.0 461 78.7
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 6.3e-213 744.2 457 82.5
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 8.2e-213 743.8 460 81.5
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 1.1e-212 743.4 456 82.7
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 2.4e-212 742.3 457 80.3
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 4.1e-212 741.5 462 81.0
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 4.1e-212 741.5 463 78.8
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 4.1e-212 741.5 463 79.0
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 9.0e-212 740.3 461 78.1
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 1.5e-211 739.6 462 80.7
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 1.5e-211 739.6 462 80.7
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 1.5e-211 739.6 462 80.7
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 1.5e-211 739.6 461 81.3
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 4.5e-211 738.0 454 81.5
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 5.9e-211 737.6 455 81.8
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 5.9e-211 737.6 462 80.5
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 3.8e-210 734.9 469 77.8
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 5.5e-209 731.1 469 78.0
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 1.2e-208 729.9 458 76.9
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 2.1e-208 729.2 463 78.0
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 2.3e-207 725.7 451 80.9
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 5.1e-207 724.5 458 79.9
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 4.3e-206 721.5 455 77.4
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 7.4e-206 720.7 458 76.9
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 9.7e-206 720.3 463 77.8
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 6.3e-205 717.6 458 76.4
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 6.3e-205 717.6 456 77.0
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 2.2e-202 709.1 456 79.2
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 5.0e-202 708.0 464 76.3
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 4.2e-201 704.9 443 80.1
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 1.0e-199 700.3 462 76.6
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 6.7e-199 697.6 464 75.4
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 2.0e-195 686.0 465 71.4
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 1.3e-194 683.3 458 72.1
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 3.2e-193 678.7 462 70.3
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 4.7e-192 674.9 464 73.7
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 2.3e-191 672.5 472 69.3
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 3.9e-191 671.8 460 70.2
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 1.1e-190 670.2 462 71.0
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 2.0e-190 669.5 460 70.0
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 2.6e-190 669.1 462 70.8
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 5.7e-190 667.9 471 69.0
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 5.7e-190 667.9 460 70.4
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 9.7e-190 667.2 471 69.4
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 1.3e-189 666.8 473 68.3
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 1.7e-189 666.4 460 70.4
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 4.8e-189 664.8 461 71.1
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 3.1e-188 662.1 461 70.9
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 1.2e-187 660.2 460 68.5
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 3.5e-187 658.7 469 71.9
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 4.5e-187 658.3 460 68.5
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 4.0e-183 645.2 392 80.6
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 3.1e-180 635.6 467 65.5
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 7.0e-180 634.4 462 66.5
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 2.0e-179 632.9 459 66.2
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 5.0e-178 628.2 387 79.6
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.8e-175 619.8 387 78.8
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 2.9e-170 602.4 367 81.2
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 5.2e-167 591.7 453 64.7
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 1.8e-164 583.2 460 62.4
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 9.8e-158 560.8 460 60.9
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 3.5e-155 552.4 394 68.0
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 3.1e-151 539.3 361 74.0
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 4.0e-151 538.9 460 60.2
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 8.9e-151 537.7 390 66.9
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 2.2e-149 533.1 322 81.7
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 5.8e-134 481.9 329 69.9
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 1.9e-132 476.9 472 50.2
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 2.4e-132 476.5 501 48.7
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 3.1e-127 459.5 455 50.1
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 8.4e-125 451.4 282 78.4
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 7.6e-118 428.3 506 44.3
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 3.8e-109 399.4 506 41.7
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.6e-104 384.0 226 85.4
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 4.8e-80 302.8 186 81.2
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 2.6e-78 297.0 194 76.3
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 1.5e-65 254.6 188 68.6
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 5.7e-65 252.7 154 81.8
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 4.8e-56 223.0 127 84.3
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 2.0e-54 217.6 171 60.8
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 2.4e-47 194.1 159 59.1
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 1.5e-33 148.3 97 74.2
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 2.2e-32 144.4 149 55.0
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.2e-30 138.7 77 85.7
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 6.0e-30 136.3 76 85.5
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 4.3e-28 130.2 92 70.7
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 1.1e-26 125.6 110 59.1
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 1.2e-25 122.1 74 77.0
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 3.3e-20 104.0 71 69.0
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.1e-18 99.0 462 24.5
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 2.6e-17 94.4 461 24.7
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 8.4e-16 89.4 52 82.7
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 1.9e-12 78.2 67 53.7
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 1.9e-12 78.2 67 53.7
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 1.7e-08 65.1 46 65.2
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 4.9e-08 63.5 69 47.8
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 8.4e-08 62.8 45 62.2
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 9.3e-07 59.3 46 58.7


User provided reference genes

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