Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 3.8e-190 668.3 414 100.0
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.2e-103 380.9 349 63.6
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 2.1e-103 380.2 348 62.9
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.1e-101 374.4 344 64.2
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 7.3e-101 371.7 351 63.0
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 1.4e-99 367.5 344 64.0
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 4.2e-96 355.9 349 62.5
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 6.0e-95 352.1 336 63.4
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 8.7e-94 348.2 347 60.8
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.1e-93 347.8 329 62.3
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 2.5e-93 346.7 314 65.3
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 6.2e-92 342.0 344 60.5
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 1.1e-91 341.3 346 62.1
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 2.4e-91 340.1 340 59.7
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 4.0e-91 339.3 355 61.4
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 1.5e-90 337.4 343 60.1
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 3.4e-90 336.3 317 64.0
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 5.8e-90 335.5 345 59.4
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 1.3e-89 334.3 368 60.9
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 1.7e-89 334.0 344 58.7
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 1.7e-89 334.0 347 62.5
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.7e-89 334.0 347 59.4
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 3.8e-89 332.8 348 63.5
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 1.9e-88 330.5 317 61.5
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 5.4e-88 328.9 346 59.0
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.6e-87 327.4 342 61.7
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 2.7e-87 326.6 349 60.2
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 2.7e-87 326.6 347 57.6
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 4.6e-87 325.9 349 60.5
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 1.3e-86 324.3 346 58.4
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.8e-86 323.9 301 62.1
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 5.1e-86 322.4 344 60.8
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 5.1e-86 322.4 339 57.2
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 1.1e-85 321.2 339 58.4
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 3.3e-85 319.7 347 60.8
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 3.3e-85 319.7 343 60.1
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 7.4e-85 318.5 352 55.7
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 9.6e-85 318.2 338 58.6
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 4.8e-84 315.8 270 68.5
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 4.8e-84 315.8 318 63.5
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 6.2e-84 315.5 344 56.1
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 2.0e-82 310.5 349 55.9
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 9.9e-82 308.1 346 58.1
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 4.9e-81 305.8 345 58.8
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 1.1e-80 304.7 377 53.3
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 2.4e-80 303.5 356 57.0
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 2.4e-80 303.5 346 56.9
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 2.4e-80 303.5 338 58.0
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 7.1e-80 302.0 348 57.2
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 1.6e-79 300.8 343 56.6
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 2.3e-78 297.0 358 53.6
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 3.9e-78 296.2 343 56.0
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 6.7e-78 295.4 344 54.7
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 8.7e-78 295.0 351 54.4
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 8.7e-78 295.0 352 55.7
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 1.9e-77 293.9 358 53.4
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 4.3e-77 292.7 340 55.9
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 2.8e-76 290.0 345 56.2
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 2.8e-76 290.0 343 56.9
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 6.2e-76 288.9 304 58.6
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 1.5e-74 284.3 337 58.2
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 2.5e-72 276.9 334 54.8
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 2.5e-72 276.9 312 56.1
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 2.1e-71 273.9 325 54.8
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 2.7e-71 273.5 310 56.1
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 3.5e-71 273.1 262 61.1
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 6.0e-71 272.3 286 57.0
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 1.8e-70 270.8 334 54.8
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 1.8e-70 270.8 350 50.9
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 3.0e-70 270.0 366 53.0
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 3.9e-70 269.6 344 52.0
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 1.1e-69 268.1 352 52.3
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 1.5e-69 267.7 311 56.6
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 1.9e-69 267.3 352 52.8
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.9e-69 267.3 343 54.8
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.5e-69 266.9 345 52.2
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 7.4e-69 265.4 278 56.8
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 3.7e-68 263.1 343 54.2
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 6.3e-68 262.3 340 54.1
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 8.2e-68 261.9 335 54.3
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 3.1e-67 260.0 278 56.1
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 4.1e-67 259.6 334 52.4
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 5.3e-67 259.2 336 55.7
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.0e-65 255.0 342 52.6
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 3.8e-65 253.1 336 52.1
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.5e-65 251.9 218 67.4
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 2.5e-64 250.4 349 52.4
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.8e-62 244.2 272 54.4
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 8.7e-62 241.9 350 50.9
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 4.3e-61 239.6 338 53.3
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 7.4e-61 238.8 336 53.0
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 6.3e-60 235.7 186 66.7
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 1.1e-59 235.0 314 49.4
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 1.4e-59 234.6 345 49.0
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.8e-59 234.2 346 48.6
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 5.9e-58 229.2 360 46.7
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 8.5e-57 225.3 352 46.6
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 7.9e-55 218.8 234 61.1
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 2.8e-52 210.3 290 49.0
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 3.7e-52 209.9 345 46.4
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 8.2e-52 208.8 242 60.3
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 1.8e-51 207.6 331 48.6
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 4.1e-51 206.5 347 49.0
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 4.1e-51 206.5 331 46.2
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 9.1e-51 205.3 237 55.3
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 9.1e-51 205.3 331 45.0
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 1.5e-50 204.5 329 45.9
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 1.3e-49 201.4 330 45.8
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 1.3e-49 201.4 330 45.8
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 1.3e-49 201.4 330 45.8
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 2.9e-49 200.3 331 44.1
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 5.0e-49 199.5 320 45.3
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 5.0e-49 199.5 341 43.1
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 1.9e-48 197.6 332 44.3
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 7.2e-48 195.7 324 45.1
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 9.4e-48 195.3 295 47.1
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 1.8e-46 191.0 206 61.7
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 1.7e-44 184.5 364 39.3
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 2.2e-44 184.1 342 46.2
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 3.7e-44 183.3 221 52.5
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 5.3e-43 179.5 190 59.5
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.0e-41 175.3 203 57.1
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.0e-41 175.3 203 57.1
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 9.4e-40 168.7 293 42.7
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 2.8e-36 157.1 294 40.5
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 8.2e-36 155.6 295 41.7
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.1e-35 153.7 125 66.4
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 1.2e-34 151.8 265 43.0
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 1.0e-33 148.7 116 73.3
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 4.0e-30 136.7 106 71.7
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 1.8e-27 127.9 184 48.4
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 5.5e-24 116.3 139 57.6
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.0e-22 112.1 317 34.1
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.4e-19 100.9 194 39.2
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 4.5e-18 96.7 199 39.7
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.8e-18 95.9 132 50.0
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.8e-18 95.9 132 50.0
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.9e-17 94.0 141 47.5
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 7.3e-16 89.4 64 78.1
Zm00001eb365900 Zea mays HOM05D004683 ORTHO05D005388 7.8e-10 69.3 146 37.7
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 8.6e-09 65.9 122 43.4
Sabra19G0093600 Salix brachista HOM05D000057 ORTHO05D005388 5.6e-08 63.2 79 57.0
Os05g0547100 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 6.2e-07 59.7 158 36.7
SMO351G0434 Selaginella moellendorffii HOM05D025386 ORTHO05D005388 1.4e-06 58.5 206 28.6
BcaNung00109 Brassica carinata HOM05D004683 ORTHO05D005388 3.1e-06 57.4 130 36.9
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 5.2e-06 56.6 75 49.3


User provided reference genes

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