Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g00510 Coffea canephora HOM05D003857 ORTHO05D004454 2.4e-41 171.8 89 100.0
GSVIVG01003487001 Vitis vinifera HOM05D003857 ORTHO05D004454 5.4e-17 90.9 86 53.5
DCAR_002236 Daucus carota HOM05D003857 ORTHO05D004454 2.7e-16 88.6 88 51.1
DCAR_030845 Daucus carota HOM05D003857 ORTHO05D004454 4.5e-16 87.8 88 51.1
TPR.G10580 Trifolium pratense HOM05D003857 ORTHO05D004454 3.8e-15 84.7 90 46.7
TWI38G0553 Tripterygium wilfordii HOM05D003857 ORTHO05D004454 3.8e-15 84.7 91 49.5
Rhsim13G0142200 Rhododendron simsii HOM05D003857 ORTHO05D004454 5.0e-15 84.3 92 47.8
Sabra16G0240200 Salix brachista HOM05D003857 ORTHO05D004454 1.5e-14 82.8 87 51.7
RcHm_v2.0_Chr5g0000661 Rosa chinensis HOM05D003857 ORTHO05D004454 2.5e-14 82.0 90 46.7
Thecc.06G238500 Theobroma cacao HOM05D003857 ORTHO05D004454 4.2e-14 81.3 90 46.7
SalBow8G3453 Salvia bowleyana HOM05D003857 ORTHO05D004454 5.5e-14 80.9 89 49.4
Nn1g07497 Nelumbo nucifera HOM05D003857 ORTHO05D004454 7.2e-14 80.5 90 44.4
Manes.15G060900 Manihot esculenta HOM05D003857 ORTHO05D004454 1.2e-13 79.7 88 45.5
Potri.001G366900 Populus trichocarpa HOM05D003857 ORTHO05D004454 1.2e-13 79.7 87 49.4
TAR629G0922 Trochodendron aralioides HOM05D003857 ORTHO05D004454 1.2e-13 79.7 90 45.6
Atru.chr1.2307 Acer truncatum HOM05D003857 ORTHO05D004454 2.1e-13 79.0 90 46.7
Hma1.2p1_0889F.1_g232820 Hydrangea macrophylla HOM05D003857 ORTHO05D004454 2.1e-13 79.0 86 45.3
FAN21G0934 Fragaria x ananassa HOM05D003857 ORTHO05D004454 2.8e-13 78.6 87 47.1
Glyma.09G013000 Glycine max HOM05D003857 ORTHO05D004454 3.6e-13 78.2 90 45.6
Glyma.15G117900 Glycine max HOM05D003857 ORTHO05D004454 3.6e-13 78.2 90 46.7
QL08p004432 Quercus lobata HOM05D003857 ORTHO05D004454 4.7e-13 77.8 86 48.8
QL08p004552 Quercus lobata HOM05D003857 ORTHO05D004454 4.7e-13 77.8 86 48.8
Manes.03G140433 Manihot esculenta HOM05D003857 ORTHO05D004454 6.1e-13 77.4 90 44.4
Manes.03G140500 Manihot esculenta HOM05D003857 ORTHO05D004454 6.1e-13 77.4 90 44.4
Potri.006G017900 Populus trichocarpa HOM05D003857 ORTHO05D004454 6.1e-13 77.4 90 43.3
FvH4_3g29390 Fragaria vesca HOM05D003857 ORTHO05D004454 1.4e-12 76.3 86 46.5
FAN11G0618 Fragaria x ananassa HOM05D003857 ORTHO05D004454 1.4e-12 76.3 86 46.5
FAN25G1727 Fragaria x ananassa HOM05D003857 ORTHO05D004454 1.4e-12 76.3 86 46.5
MD00G1056900 Malus domestica HOM05D003857 ORTHO05D004454 1.4e-12 76.3 86 45.3
Thhalv10027070m.g Eutrema salsugineum HOM05D003857 ORTHO05D004454 1.8e-12 75.9 84 47.6
Sabra16G0011900 Salix brachista HOM05D003857 ORTHO05D004454 2.3e-12 75.5 86 43.0
MELO3C026073.2 Cucumis melo HOM05D003857 ORTHO05D004454 3.0e-12 75.1 90 46.7
Lalb_Chr15g0088131 Lupinus albus HOM05D003857 ORTHO05D004454 3.0e-12 75.1 88 45.5
Manes.08G070300 Manihot esculenta HOM05D003857 ORTHO05D004454 3.0e-12 75.1 94 43.6
Prupe.4G242100 Prunus persica HOM05D003857 ORTHO05D004454 3.0e-12 75.1 85 47.1
Cpa.g.c35467.2 Carica papaya HOM05D003857 ORTHO05D004454 4.0e-12 74.7 87 46.0
FAN16G1576 Fragaria x ananassa HOM05D003857 ORTHO05D004454 4.0e-12 74.7 86 45.3
FAN25G3265 Fragaria x ananassa HOM05D003857 ORTHO05D004454 4.0e-12 74.7 91 42.9
MD03G1183900 Malus domestica HOM05D003857 ORTHO05D004454 6.8e-12 73.9 88 43.2
Atru.chr2.3676 Acer truncatum HOM05D003857 ORTHO05D004454 8.9e-12 73.6 87 42.5
CAN.G337.6 Capsicum annuum HOM05D003857 ORTHO05D004454 8.9e-12 73.6 87 44.8
Oeu047047.1 Olea europaea HOM05D003857 ORTHO05D004454 8.9e-12 73.6 91 52.7
ClCG01G010960 Citrullus lanatus HOM05D003857 ORTHO05D004454 1.2e-11 73.2 86 46.5
Cc05_g14870 Coffea canephora HOM05D003857 ORTHO05D004454 1.2e-11 73.2 89 47.2
RcHm_v2.0_Chr5g0053811 Rosa chinensis HOM05D003857 ORTHO05D004454 1.2e-11 73.2 87 46.0
Hund01891 Selenicereus undatus HOM05D003857 ORTHO05D004454 1.2e-11 73.2 87 43.7
PGSC0003DMG400022174 Solanum tuberosum HOM05D003857 ORTHO05D004454 1.5e-11 72.8 89 42.7
Potri.016G007101 Populus trichocarpa HOM05D003857 ORTHO05D004454 2.0e-11 72.4 92 37.0
Prupe.4G005500 Prunus persica HOM05D003857 ORTHO05D004454 2.0e-11 72.4 85 43.5
CANSAT11G1184 Cannabis sativa HOM05D003857 ORTHO05D004454 2.6e-11 72.0 84 46.4
Haze_09813 Corylus avellana HOM05D003857 ORTHO05D004454 2.6e-11 72.0 84 50.0
CsaV3_1G015520 Cucumis sativus L. HOM05D003857 ORTHO05D004454 2.6e-11 72.0 90 45.6
HanXRQChr05g0161821 Helianthus annuus HOM05D003857 ORTHO05D004454 3.4e-11 71.6 86 46.5
Ciclev10009964m.g Citrus clementina HOM05D003857 ORTHO05D004454 4.4e-11 71.2 82 47.6
MD11G1200800 Malus domestica HOM05D003857 ORTHO05D004454 4.4e-11 71.2 88 40.9
Haze_07004 Corylus avellana HOM05D003857 ORTHO05D004454 5.7e-11 70.9 90 38.9
Nitab4.5_0000461g0260 Nicotiana tabacum HOM05D003857 ORTHO05D004454 5.7e-11 70.9 87 42.5
Aqoxy1G04245 Aquilegia oxysepala HOM05D003857 ORTHO05D004454 7.5e-11 70.5 90 50.0
Ciclev10017306m.g Citrus clementina HOM05D003857 ORTHO05D004454 7.5e-11 70.5 83 48.2
FvH4_3g00490 Fragaria vesca HOM05D003857 ORTHO05D004454 7.5e-11 70.5 91 41.8
Oeu014353.1 Olea europaea HOM05D003857 ORTHO05D004454 7.5e-11 70.5 89 41.6
COL.COLO4_09818 Corchorus olitorius HOM05D003857 ORTHO05D004454 9.8e-11 70.1 87 44.8
Duzib192G0644 Durio zibethinus HOM05D003857 ORTHO05D004454 9.8e-11 70.1 87 44.8
Actinidia05015 Actinidia chinensis HOM05D003857 ORTHO05D004454 1.3e-10 69.7 89 42.7
Gohir.A13G133501 Gossypium hirsutum HOM05D003857 ORTHO05D004454 1.3e-10 69.7 83 44.6
Gohir.D13G136800 Gossypium hirsutum HOM05D003857 ORTHO05D004454 1.3e-10 69.7 83 44.6
Gorai.013G153300 Gossypium raimondii HOM05D003857 ORTHO05D004454 1.3e-10 69.7 83 44.6
AT4G16400 Arabidopsis thaliana HOM05D003857 ORTHO05D004454 1.7e-10 69.3 84 44.0
Sabra06G0013000 Salix brachista HOM05D003857 ORTHO05D004454 1.7e-10 69.3 90 41.1
Sopen07g033670 Solanum pennellii HOM05D003857 ORTHO05D004454 1.7e-10 69.3 87 42.5
A08p12220 Brassica napus HOM05D003857 ORTHO05D004454 2.2e-10 68.9 84 42.9
Nn1g03204 Nelumbo nucifera HOM05D003857 ORTHO05D004454 2.2e-10 68.9 86 45.3
Solyc07g065460.1 Solanum lycopersicum HOM05D003857 ORTHO05D004454 2.2e-10 68.9 87 42.5
Thecc.07G015100 Theobroma cacao HOM05D003857 ORTHO05D004454 2.2e-10 68.9 87 46.0
BolC1t02594H Brassica oleracea HOM05D003857 ORTHO05D004454 2.8e-10 68.6 84 44.0
BraA01t02029Z Brassica rapa HOM05D003857 ORTHO05D004454 3.7e-10 68.2 84 41.7
Phvul.003G085900 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 3.7e-10 68.2 92 41.3
Rhsim06G0228800 Rhododendron simsii HOM05D003857 ORTHO05D004454 3.7e-10 68.2 89 40.4
Sc03g0011180 Simmondsia chinensis HOM05D003857 ORTHO05D004454 3.7e-10 68.2 89 42.7
Gohir.D01G076300 Gossypium hirsutum HOM05D003857 ORTHO05D004454 4.9e-10 67.8 89 43.8
Gorai.002G099500 Gossypium raimondii HOM05D003857 ORTHO05D004454 4.9e-10 67.8 89 43.8
Nitab4.5_0006886g0010 Nicotiana tabacum HOM05D003857 ORTHO05D004454 4.9e-10 67.8 87 41.4
Sed0020326 Sechium edule HOM05D003857 ORTHO05D004454 4.9e-10 67.8 87 44.8
MSTRG.14482 Avicennia marina HOM05D003857 ORTHO05D004454 6.3e-10 67.4 86 43.0
Gohir.A01G091000 Gossypium hirsutum HOM05D003857 ORTHO05D004454 6.3e-10 67.4 89 43.8
Sp7g14930 Schrenkiella parvula HOM05D003857 ORTHO05D004454 6.3e-10 67.4 84 44.0
AL7G38610 Arabidopsis lyrata HOM05D003857 ORTHO05D004454 8.3e-10 67.0 84 40.5
A01p21200 Brassica napus HOM05D003857 ORTHO05D004454 8.3e-10 67.0 84 41.7
arahy.Tifrunner.gnm1.ann1.A9XG53 Arachis hypogaea HOM05D003857 ORTHO05D004454 1.1e-09 66.6 90 38.9
BcaNung00200 Brassica carinata HOM05D003857 ORTHO05D004454 1.1e-09 66.6 84 39.3
C01p26490 Brassica napus HOM05D003857 ORTHO05D004454 1.1e-09 66.6 84 42.9
Lj4g0009185 Lotus japonicus HOM05D003857 ORTHO05D004454 1.1e-09 66.6 91 41.8
Phvul.006G140400 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 1.1e-09 66.6 90 41.1
arahy.Tifrunner.gnm1.ann1.J6PND3 Arachis hypogaea HOM05D003857 ORTHO05D004454 1.4e-09 66.2 90 38.9
Glyma.07G267300 Glycine max HOM05D003857 ORTHO05D004454 1.4e-09 66.2 92 40.2
Gohir.A06G156300 Gossypium hirsutum HOM05D003857 ORTHO05D004454 1.8e-09 65.9 82 48.8
CiPaw.09G107600 Carya illinoinensis HOM05D003857 ORTHO05D004454 2.4e-09 65.5 89 41.6
THA.LOC104815698 Tarenaya hassleriana HOM05D003857 ORTHO05D004454 2.4e-09 65.5 97 43.3
Aa31LG2G12460 Aethionema arabicum HOM05D003857 ORTHO05D004454 3.1e-09 65.1 90 41.1
AUR62036444 Chenopodium quinoa HOM05D003857 ORTHO05D004454 3.1e-09 65.1 90 38.9
Sc21g0003640 Simmondsia chinensis HOM05D003857 ORTHO05D004454 3.1e-09 65.1 83 48.2
Gohir.D06G162600 Gossypium hirsutum HOM05D003857 ORTHO05D004454 4.1e-09 64.7 82 47.6
Gorai.010G189800 Gossypium raimondii HOM05D003857 ORTHO05D004454 4.1e-09 64.7 82 47.6
PGR083G2342 Punica granatum HOM05D003857 ORTHO05D004454 4.1e-09 64.7 83 41.0
CiPaw.12G137500 Carya illinoinensis HOM05D003857 ORTHO05D004454 5.4e-09 64.3 87 42.5
MBI16_g22432_MAGBIO Magnolia biondii HOM05D003857 ORTHO05D004454 5.4e-09 64.3 85 42.4
Carub.0007s2513 Capsella rubella HOM05D003857 ORTHO05D004454 7.0e-09 63.9 82 41.5
MSTRG.13018 Avicennia marina HOM05D003857 ORTHO05D004454 9.2e-09 63.5 83 43.4
A01p40370 Brassica napus HOM05D003857 ORTHO05D004454 9.2e-09 63.5 97 39.2
A03p49780 Brassica napus HOM05D003857 ORTHO05D004454 9.2e-09 63.5 84 40.5
BraA03t14073Z Brassica rapa HOM05D003857 ORTHO05D004454 9.2e-09 63.5 84 40.5
C07p47840 Brassica napus HOM05D003857 ORTHO05D004454 1.2e-08 63.2 84 40.5
BolC7t45306H Brassica oleracea HOM05D003857 ORTHO05D004454 1.2e-08 63.2 84 40.5
Migut.H01760 Erythranthe guttata HOM05D003857 ORTHO05D004454 1.2e-08 63.2 82 46.3
Migut.H01624 Erythranthe guttata HOM05D003857 ORTHO05D004454 1.6e-08 62.8 92 41.3
SGA_v2.0_scaffold8G04405 Striga asiatica HOM05D003857 ORTHO05D004454 1.6e-08 62.8 85 42.4
BraA01t04072Z Brassica rapa HOM05D003857 ORTHO05D004454 2.0e-08 62.4 94 39.4
TPR.G8580 Trifolium pratense HOM05D003857 ORTHO05D004454 2.0e-08 62.4 84 41.7
AUR62017087 Chenopodium quinoa HOM05D003857 ORTHO05D004454 2.7e-08 62.0 83 39.8
Glyma.02G299800 Glycine max HOM05D003857 ORTHO05D004454 2.7e-08 62.0 86 39.5
EL10Ac4g07592 Beta vulgaris HOM05D003857 ORTHO05D004454 4.5e-08 61.2 86 40.7
Oeu041436.1 Olea europaea HOM05D003857 ORTHO05D004454 7.8e-08 60.5 88 38.6
Medtr5g095660 Medicago truncatula HOM05D003857 ORTHO05D004454 1.0e-07 60.1 88 38.6
C01p51910 Brassica napus HOM05D003857 ORTHO05D004454 1.3e-07 59.7 94 38.3
PSO210G4960 Papaver somniferum HOM05D003857 ORTHO05D004454 1.3e-07 59.7 104 37.5
arahy.Tifrunner.gnm1.ann1.QWC3QU Arachis hypogaea HOM05D003857 ORTHO05D004454 2.9e-07 58.5 81 40.7
arahy.Tifrunner.gnm1.ann1.Y3WDI1 Arachis hypogaea HOM05D003857 ORTHO05D004454 2.9e-07 58.5 81 40.7
Sp3g11350 Schrenkiella parvula HOM05D003857 ORTHO05D004454 2.9e-07 58.5 94 39.4
BolC1t05138H Brassica oleracea HOM05D003857 ORTHO05D004454 3.9e-07 58.2 94 37.2
ClCG10G004230 Citrullus lanatus HOM05D003857 ORTHO05D004454 3.9e-07 58.2 81 40.7
ClCG10G004260 Citrullus lanatus HOM05D003857 ORTHO05D004454 3.9e-07 58.2 81 40.7
Phvul.008G278500 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 3.9e-07 58.2 85 36.5
Thhalv10022264m.g Eutrema salsugineum HOM05D003857 ORTHO05D004454 6.6e-07 57.4 94 37.2
THA.LOC104810291 Tarenaya hassleriana HOM05D003857 ORTHO05D004454 8.6e-07 57.0 97 38.1
TWI38G0111 Tripterygium wilfordii HOM05D003857 ORTHO05D004454 8.6e-07 57.0 76 46.1
Actinidia35399 Actinidia chinensis HOM05D003857 ORTHO05D004454 1.1e-06 56.6 54 44.4
Phvul.006G056400 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 1.1e-06 56.6 87 39.1
SGA_v2.0_scaffold42G15994 Striga asiatica HOM05D003857 ORTHO05D004454 1.5e-06 56.2 84 39.3
vmacro22708 Vaccinium macrocarpon HOM05D003857 ORTHO05D004454 1.5e-06 56.2 82 36.6
Glyma.17G006700 Glycine max HOM05D003857 ORTHO05D004454 1.9e-06 55.8 92 34.8
Aa31LG8G380 Aethionema arabicum HOM05D003857 ORTHO05D004454 2.5e-06 55.5 94 37.2
BcaB06g25481 Brassica carinata HOM05D003857 ORTHO05D004454 2.5e-06 55.5 94 36.2
CsaV3_3G004060 Cucumis sativus L. HOM05D003857 ORTHO05D004454 2.5e-06 55.5 81 40.7
Glyma.18G078100 Glycine max HOM05D003857 ORTHO05D004454 3.3e-06 55.1 84 36.9
Sed0010782 Sechium edule HOM05D003857 ORTHO05D004454 3.3e-06 55.1 83 41.0
AL3G24920 Arabidopsis lyrata HOM05D003857 ORTHO05D004454 4.3e-06 54.7 95 36.8
Carub.0003s1252 Capsella rubella HOM05D003857 ORTHO05D004454 4.3e-06 54.7 95 36.8
COL.COLO4_31924 Corchorus olitorius HOM05D003857 ORTHO05D004454 4.3e-06 54.7 83 41.0
Glyma.08G328700 Glycine max HOM05D003857 ORTHO05D004454 4.3e-06 54.7 84 36.9
CARHR087760 Cardamine hirsuta HOM05D003857 ORTHO05D004454 5.6e-06 54.3 94 36.2
LjContig00081g0000031 Lotus japonicus HOM05D003857 ORTHO05D004454 5.6e-06 54.3 84 32.1


User provided reference genes

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