Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 3.5e-94 348.2 166 100.0
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 3.6e-43 178.7 160 59.4
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 5.3e-42 174.9 146 60.3
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 9.0e-42 174.1 142 63.4
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 9.0e-42 174.1 146 60.3
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 1.2e-41 173.7 161 57.1
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 2.0e-41 172.9 153 58.8
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 2.1e-38 162.9 140 57.9
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 1.0e-37 160.6 144 56.9
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 1.3e-37 160.2 153 54.2
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 3.9e-37 158.7 147 56.5
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 6.7e-37 157.9 153 56.2
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 9.6e-36 154.1 148 54.1
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 1.3e-35 153.7 136 55.9
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 1.1e-34 150.6 141 55.3
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 1.4e-34 150.2 150 52.7
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 1.4e-34 150.2 150 52.7
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 3.1e-34 149.1 143 55.2
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 3.1e-34 149.1 148 51.4
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 6.9e-34 147.9 148 52.7
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 4.5e-33 145.2 158 47.5
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 4.5e-33 145.2 155 48.4
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 4.5e-33 145.2 130 60.0
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 7.6e-33 144.4 146 53.4
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 1.3e-32 143.7 159 45.9
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.3e-32 143.7 148 52.7
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 1.7e-32 143.3 159 45.3
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 2.2e-32 142.9 159 45.9
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 3.8e-32 142.1 110 64.5
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 4.9e-32 141.7 155 51.6
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 4.9e-32 141.7 154 50.6
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 6.5e-32 141.4 161 47.8
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 6.5e-32 141.4 158 49.4
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 8.4e-32 141.0 154 50.0
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 8.4e-32 141.0 144 50.7
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 1.4e-31 140.2 151 50.3
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 2.5e-31 139.4 159 47.2
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 4.2e-31 138.7 159 48.4
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 4.2e-31 138.7 136 53.7
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 7.1e-31 137.9 149 49.0
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 7.1e-31 137.9 159 45.3
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 7.1e-31 137.9 168 47.0
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 9.3e-31 137.5 161 47.2
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 9.3e-31 137.5 161 47.8
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 2.7e-30 136.0 137 51.8
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 2.7e-30 136.0 159 47.2
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 3.5e-30 135.6 156 46.8
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 4.6e-30 135.2 137 53.3
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 1.0e-29 134.0 159 45.3
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 1.8e-29 133.3 144 52.1
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 3.0e-29 132.5 161 47.2
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 3.9e-29 132.1 151 49.0
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 5.1e-29 131.7 149 47.0
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 5.1e-29 131.7 146 47.3
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 5.1e-29 131.7 157 48.4
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 1.9e-28 129.8 146 48.6
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 1.9e-28 129.8 154 42.9
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 3.3e-28 129.0 162 45.1
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 4.3e-28 128.6 161 47.8
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 4.3e-28 128.6 136 51.5
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 7.4e-28 127.9 153 46.4
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 7.4e-28 127.9 157 43.3
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 1.3e-27 127.1 161 44.1
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 1.6e-27 126.7 158 41.8
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 2.1e-27 126.3 158 44.9
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 2.1e-27 126.3 158 48.1
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 2.8e-27 125.9 141 51.8
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 2.8e-27 125.9 142 49.3
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 3.7e-27 125.6 140 48.6
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 1.1e-26 124.0 161 42.9
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 1.8e-26 123.2 159 42.8
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 1.8e-26 123.2 149 49.0
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 1.8e-26 123.2 137 46.7
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 1.8e-26 123.2 137 44.5
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 2.4e-26 122.9 158 41.1
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 2.4e-26 122.9 158 41.1
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 3.1e-26 122.5 161 44.1
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 3.1e-26 122.5 148 44.6
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 4.0e-26 122.1 161 44.1
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 5.3e-26 121.7 154 44.8
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 9.0e-26 120.9 143 44.8
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 1.2e-25 120.6 144 47.2
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 1.5e-25 120.2 160 45.6
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 2.0e-25 119.8 140 49.3
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 2.0e-25 119.8 141 46.8
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 2.0e-25 119.8 144 46.5
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 2.0e-25 119.8 144 46.5
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 2.0e-25 119.8 148 44.6
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 3.4e-25 119.0 158 39.9
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 1.3e-24 117.1 132 45.5
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 2.2e-24 116.3 149 47.0
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 3.8e-24 115.5 146 43.8
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 5.0e-24 115.2 137 44.5
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 5.0e-24 115.2 138 46.4
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 5.0e-24 115.2 144 45.8
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 5.0e-24 115.2 152 41.4
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 6.5e-24 114.8 147 46.3
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 6.5e-24 114.8 131 48.9
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 8.4e-24 114.4 147 42.9
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 8.4e-24 114.4 157 40.8
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 1.4e-23 113.6 158 41.8
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.4e-23 113.6 144 45.1
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 1.9e-23 113.2 162 41.4
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 3.2e-23 112.5 136 43.4
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 4.2e-23 112.1 156 48.7
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 4.2e-23 112.1 151 40.4
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 5.5e-23 111.7 149 42.3
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 5.5e-23 111.7 158 41.8
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 5.5e-23 111.7 158 41.8
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 7.1e-23 111.3 145 41.4
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 9.3e-23 110.9 144 41.7
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 1.2e-22 110.5 151 43.0
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 1.2e-22 110.5 158 41.1
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 1.6e-22 110.2 158 41.1
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 1.6e-22 110.2 158 40.5
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 1.6e-22 110.2 158 41.1
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 1.6e-22 110.2 149 45.0
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.6e-22 110.2 158 39.9
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 2.1e-22 109.8 158 40.5
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 2.1e-22 109.8 158 40.5
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 2.7e-22 109.4 145 42.8
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 2.7e-22 109.4 144 43.1
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 3.5e-22 109.0 158 39.2
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 1.0e-21 107.5 144 41.7
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 1.0e-21 107.5 144 41.7
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 1.3e-21 107.1 144 40.3
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 1.3e-21 107.1 141 42.6
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 2.3e-21 106.3 141 41.1
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 3.0e-21 105.9 144 41.0
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 3.0e-21 105.9 144 41.0
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 3.0e-21 105.9 145 44.1
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 5.1e-21 105.1 158 39.2
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 6.7e-21 104.8 146 44.5
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 8.7e-21 104.4 144 41.0
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 8.7e-21 104.4 151 41.7
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 8.7e-21 104.4 144 39.6
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 8.7e-21 104.4 144 39.6
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 8.7e-21 104.4 145 43.4
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 1.9e-20 103.2 137 39.4
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 2.5e-20 102.8 144 38.9
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 2.5e-20 102.8 144 38.9
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 2.5e-20 102.8 137 39.4
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 3.3e-20 102.4 144 39.6
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 4.3e-20 102.1 138 39.9
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 4.3e-20 102.1 138 39.9
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 4.3e-20 102.1 142 43.7
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 9.7e-20 100.9 115 46.1
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 1.3e-19 100.5 138 40.6
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 1.3e-19 100.5 138 40.6
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.6e-19 100.1 150 41.3
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 2.8e-19 99.4 156 39.7
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 6.3e-19 98.2 149 41.6
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 1.4e-18 97.1 137 38.0
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 2.4e-18 96.3 137 38.0
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 2.0e-17 93.2 137 36.5
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 4.5e-17 92.0 146 34.9
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 5.9e-17 91.7 158 39.9
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 7.7e-17 91.3 146 35.6
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 7.7e-17 91.3 146 35.6
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 7.7e-17 91.3 146 35.6
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 7.7e-17 91.3 146 34.9
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 1.0e-16 90.9 146 41.1
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 1.3e-16 90.5 145 37.2
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.7e-16 90.1 146 36.3
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 2.2e-16 89.7 141 39.0
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 2.2e-16 89.7 101 43.6
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 8.5e-16 87.8 155 34.2
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 1.1e-15 87.4 135 37.8
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 4.2e-15 85.5 137 35.0
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 4.2e-15 85.5 137 35.0
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 4.2e-15 85.5 137 35.0
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 4.2e-15 85.5 137 35.0
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 4.2e-15 85.5 137 35.0
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 9.4e-15 84.3 126 34.9
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 9.4e-15 84.3 143 39.9
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 1.6e-14 83.6 137 35.0
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 7.9e-14 81.3 98 40.8
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 2.5e-12 76.3 97 43.3


User provided reference genes

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