Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g17160 Coffea canephora HOM05D000087 ORTHO05D005735 0.0e+00 2254.6 1162 100.0
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 0.0e+00 1173.7 1204 54.9
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 0.0e+00 1129.4 1207 53.2
MSTRG.22476 Avicennia marina HOM05D000087 ORTHO05D005735 0.0e+00 1120.1 1187 53.7
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 0.0e+00 1113.6 1210 53.1
Migut.H02249 Erythranthe guttata HOM05D000087 ORTHO05D005735 0.0e+00 1089.7 1179 53.4
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 0.0e+00 1088.6 1214 51.2
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 0.0e+00 1077.4 1192 51.4
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 0.0e+00 1076.6 1201 49.9
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 4.0e-311 1071.6 1220 50.9
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 3.3e-308 1062.0 1215 50.9
Sopen07g004380 Solanum pennellii HOM05D000087 ORTHO05D005735 2.4e-306 1055.8 1071 55.3
Actinidia22240 Actinidia chinensis HOM05D000087 ORTHO05D005735 3.1e-306 1055.4 1210 51.7
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 4.0e-306 1055.0 1170 51.3
FAN04G3195 Fragaria x ananassa HOM05D000087 ORTHO05D005735 5.3e-306 1054.7 1201 51.0
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 9.0e-306 1053.9 1206 51.0
Solyc07g008450.3 Solanum lycopersicum HOM05D000087 ORTHO05D005735 5.8e-305 1051.2 1066 54.9
FvH4_5g10170 Fragaria vesca HOM05D000087 ORTHO05D005735 6.4e-304 1047.7 1208 50.9
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 1.4e-303 1046.6 1193 50.0
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 1.0e-301 1040.4 1217 49.6
CAN.G1548.2 Capsicum annuum HOM05D000087 ORTHO05D005735 1.1e-300 1036.9 1066 54.7
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 3.3e-300 1035.4 1213 49.1
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 4.3e-300 1035.0 1216 49.4
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 4.8e-299 1031.6 1217 49.5
FAN08G3226 Fragaria x ananassa HOM05D000087 ORTHO05D005735 3.1e-298 1028.9 1208 50.3
QL02p026653 Quercus lobata HOM05D000087 ORTHO05D005735 5.8e-297 1024.6 1141 52.1
Peaxi162Scf00046g00228 Petunia axillaris HOM05D000087 ORTHO05D005735 6.5e-296 1021.1 1047 54.6
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 8.4e-296 1020.8 1216 48.6
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 7.1e-295 1017.7 1314 47.0
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 8.7e-293 1010.7 1206 48.7
PSO063G0654 Papaver somniferum HOM05D000087 ORTHO05D005735 1.1e-290 1003.8 1233 47.8
FAN18G4270 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.4e-290 1003.4 1208 49.5
Eucgr.D02539 Eucalyptus grandis HOM05D000087 ORTHO05D005735 3.4e-289 998.8 1213 48.4
Rhsim02G0255700 Rhododendron simsii HOM05D000087 ORTHO05D005735 3.8e-288 995.3 1236 49.3
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 8.4e-288 994.2 1178 48.6
Cfa011874 Carpinus fangiana HOM05D000087 ORTHO05D005735 1.6e-286 989.9 1152 49.8
Nitab4.5_0007502g0010 Nicotiana tabacum HOM05D000087 ORTHO05D005735 1.3e-283 980.3 1074 52.5
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 3.7e-283 978.8 1174 48.9
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 9.0e-282 974.2 1201 47.3
PSO782G2195 Papaver somniferum HOM05D000087 ORTHO05D005735 1.7e-280 969.9 1224 47.0
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 2.9e-280 969.1 1210 47.8
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 6.5e-280 968.0 1179 48.3
EL10Ac2g03880 Beta vulgaris HOM05D000087 ORTHO05D005735 2.0e-276 956.4 1210 46.6
Nitab4.5_0000491g0190 Nicotiana tabacum HOM05D000087 ORTHO05D005735 1.3e-275 953.7 1067 51.6
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 1.3e-275 953.7 1208 45.4
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 3.7e-275 952.2 1208 47.5
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 2.4e-274 949.5 1212 46.8
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 4.2e-271 938.7 1200 45.9
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 1.4e-269 933.7 1208 47.0
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 2.0e-268 929.9 1210 46.3
THA.LOC104806594 Tarenaya hassleriana HOM05D000087 ORTHO05D005735 5.0e-264 915.2 1171 46.3
Haze_09232 Corylus avellana HOM05D000087 ORTHO05D005735 4.7e-262 908.7 1154 47.1
Medtr3g080640 Medicago truncatula HOM05D000087 ORTHO05D005735 1.8e-261 906.7 1123 46.8
Sc01g0010950 Simmondsia chinensis HOM05D000087 ORTHO05D005735 3.3e-260 902.5 1125 47.0
PGR031G2531 Punica granatum HOM05D000087 ORTHO05D005735 1.4e-258 897.1 1202 45.4
C01p21480 Brassica napus HOM05D000087 ORTHO05D005735 2.4e-258 896.3 1189 44.4
BolC1t02068H Brassica oleracea HOM05D000087 ORTHO05D005735 2.4e-258 896.3 1189 44.4
Carub.0007s0001 Capsella rubella HOM05D000087 ORTHO05D005735 1.7e-256 890.2 1212 43.7
CiPaw.11G106200 Carya illinoinensis HOM05D000087 ORTHO05D005735 2.2e-256 889.8 863 57.7
Sp7g37630 Schrenkiella parvula HOM05D000087 ORTHO05D005735 1.2e-254 884.0 1203 44.0
A01p17150 Brassica napus HOM05D000087 ORTHO05D005735 6.1e-254 881.7 1189 44.0
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 6.1e-254 881.7 1341 43.0
AT4G38120 Arabidopsis thaliana HOM05D000087 ORTHO05D005735 1.4e-253 880.6 1203 44.4
BraA01t01671Z Brassica rapa HOM05D000087 ORTHO05D005735 1.2e-252 877.5 1193 43.8
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 1.7e-248 863.6 1335 42.8
AL7G10010 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 3.8e-248 862.4 1205 43.7
Hund03336 Selenicereus undatus HOM05D000087 ORTHO05D005735 6.5e-248 861.7 1200 43.6
Phvul.011G167550 Phaseolus vulgaris HOM05D000087 ORTHO05D005735 9.4e-247 857.8 1027 47.3
ATR0579G142 Amborella trichopoda HOM05D000087 ORTHO05D005735 5.7e-244 848.6 1182 42.7
MBI04_g04806_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 7.3e-231 805.1 1139 43.4
vmacro08519 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 2.1e-230 803.5 898 53.1
arahy.Tifrunner.gnm1.ann1.0XGN9Z Arachis hypogaea HOM05D000087 ORTHO05D005735 9.2e-226 788.1 1229 41.8
Aa31LG6G16960 Aethionema arabicum HOM05D000087 ORTHO05D005735 4.1e-218 762.7 1178 41.9
Zm00001eb416210 Zea mays HOM05D000087 ORTHO05D005735 1.1e-213 748.0 1188 40.0
Thhalv10024269m.g Eutrema salsugineum HOM05D000087 ORTHO05D005735 4.1e-210 736.1 1202 39.9
DCAR_010123 Daucus carota HOM05D000087 ORTHO05D005735 5.8e-204 715.7 826 49.5
arahy.Tifrunner.gnm1.ann1.DH86LW Arachis hypogaea HOM05D000087 ORTHO05D005735 4.0e-197 693.0 1262 37.7
Potri.001G454200 Populus trichocarpa HOM05D000087 ORTHO05D005735 3.2e-194 683.3 852 46.8
Aqoxy5G04397 Aquilegia oxysepala HOM05D000087 ORTHO05D005735 4.3e-183 646.4 871 46.3
Mapoly0043s0141 Marchantia polymorpha HOM05D000087 ORTHO05D005735 2.8e-174 617.1 965 39.2
Glyma.06G180700 Glycine max HOM05D000087 ORTHO05D005735 8.5e-171 605.5 664 50.0
FAN18G0494 Fragaria x ananassa HOM05D000087 ORTHO05D005735 9.3e-170 602.1 1010 40.9
CDE02G0276 Ceratophyllum demersum HOM05D000087 ORTHO05D005735 1.1e-167 595.1 929 41.8
Pp3c3_37190 Physcomitrium patens HOM05D000087 ORTHO05D005735 2.3e-160 570.9 1138 34.7
SMO367G1062 Selaginella moellendorffii HOM05D000087 ORTHO05D005735 1.5e-159 568.2 1180 34.1
Atru.chr9.2610 Acer truncatum HOM05D000087 ORTHO05D005735 4.5e-156 556.6 502 59.4
Hma1.2p1_0198F.1_g085370 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 1.8e-144 518.1 593 50.8
HPP92_028198 Vanilla planifolia HOM05D000087 ORTHO05D005735 1.4e-141 508.4 764 41.1
VMungo1127G0184 Vigna mungo HOM05D000087 ORTHO05D005735 3.2e-138 497.3 567 49.6
HPP92_008913 Vanilla planifolia HOM05D000087 ORTHO05D005735 7.2e-138 496.1 681 44.5
CARHR143600 Cardamine hirsuta HOM05D000087 ORTHO05D005735 5.0e-131 473.4 502 52.2
MD14G1143100 Malus domestica HOM05D000087 ORTHO05D005735 6.5e-131 473.0 585 48.7
Os08g0152900 Oryza sativa ssp. japonica HOM05D000087 ORTHO05D005735 5.0e-115 420.2 580 43.1
Oeu019648.1 Olea europaea HOM05D000087 ORTHO05D005735 2.5e-114 417.9 482 51.2
Ca_16291_v3 Cicer arietinum L. HOM05D000087 ORTHO05D005735 2.3e-107 394.8 601 41.8
Cpa.g.sc37.117 Carica papaya HOM05D000087 ORTHO05D005735 1.7e-102 378.6 608 40.3
CBR_g3175 Chara braunii HOM05D000087 ORTHO05D005735 2.9e-102 377.9 768 34.8
Glyma.06G181000 Glycine max HOM05D000087 ORTHO05D005735 2.0e-95 355.1 542 42.1
COL.COLO4_10863 Corchorus olitorius HOM05D000087 ORTHO05D005735 2.4e-88 331.6 1153 28.3
SEGI_15816 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.6e-81 308.9 377 49.1
MD14G1142900 Malus domestica HOM05D000087 ORTHO05D005735 2.2e-70 271.9 253 58.5
MCO07G377 Micromonas commoda HOM05D000087 ORTHO05D005735 1.8e-59 235.7 855 26.2
CSS0029196 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 4.3e-58 231.1 175 69.1
vmacro08520 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 1.6e-57 229.2 423 38.8
SEGI_26992 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 9.4e-53 213.4 255 46.3
Duzib084G1107 Durio zibethinus HOM05D000087 ORTHO05D005735 8.8e-51 206.8 401 35.4
SalBow4G1355 Salvia bowleyana HOM05D000087 ORTHO05D005735 5.3e-48 197.6 303 39.9
Duzib084G0823 Durio zibethinus HOM05D000087 ORTHO05D005735 1.6e-44 186.0 167 54.5
Cpa.g.sc363.3 Carica papaya HOM05D000087 ORTHO05D005735 1.0e-43 183.3 177 53.1
CSS0034403 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.4e-43 183.0 234 50.0
CSS0007327 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.2e-41 175.6 244 45.9
AUR62009162 Chenopodium quinoa HOM05D000087 ORTHO05D005735 1.3e-38 166.4 533 31.0
AL8G10020 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 2.7e-36 158.7 253 37.9
Cre03.g166600 Chlamydomonas reinhardtii HOM05D000087 ORTHO05D005735 4.7e-36 157.9 1109 21.6
CARHR293880 Cardamine hirsuta HOM05D000087 ORTHO05D005735 9.7e-34 150.2 123 58.5
FAN13G3301 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.8e-27 129.4 130 51.5
Oeu053260.1 Olea europaea HOM05D000087 ORTHO05D010194 4.0e-27 128.3 133 54.9
CiPaw.11G106300 Carya illinoinensis HOM05D000087 ORTHO05D005735 1.4e-24 119.8 258 32.2
HPP92_028197 Vanilla planifolia HOM05D000087 ORTHO05D005735 1.8e-24 119.4 171 42.1
CARHR293870 Cardamine hirsuta HOM05D000087 ORTHO05D005735 3.5e-23 115.2 117 53.0
SEGI_26806 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 7.7e-23 114.0 314 29.3
RcHm_v2.0_Chr7g0188121 Rosa chinensis HOM05D000087 ORTHO05D005735 1.6e-20 106.3 71 77.5
MD14G1142800 Malus domestica HOM05D000087 ORTHO05D005735 8.8e-19 100.5 262 31.3
CARHR291390 Cardamine hirsuta HOM05D000087 ORTHO05D005735 7.5e-18 97.4 61 70.5
VMungo1080G1218 Vigna mungo HOM05D000087 ORTHO05D005735 7.5e-18 97.4 105 47.6
MBI04_g04804_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 6.3e-17 94.4 98 46.9
Hma1.2p1_0198F.1_g085360 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 2.4e-16 92.4 87 52.9
VMungo0145G0001 Vigna mungo HOM05D000087 ORTHO05D005735 2.0e-15 89.4 97 48.5
Rhsim02G0255800 Rhododendron simsii HOM05D000087 ORTHO05D005735 1.0e-14 87.0 96 50.0
Duzib084G0615 Durio zibethinus HOM05D000087 ORTHO05D005735 2.9e-14 85.5 94 53.2
CSS0050207 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.6e-12 79.7 86 47.7
MBI17_g33112_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 8.0e-12 77.4 85 47.1
SEGI_26704 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 4.0e-11 75.1 82 43.9
VMungo1127G1440 Vigna mungo HOM05D000087 ORTHO05D005735 4.0e-11 75.1 164 36.0
CARHR046160 Cardamine hirsuta HOM05D000087 ORTHO05D005735 8.9e-11 73.9 61 55.7
MBI04_g04802_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.5e-10 73.2 68 58.8
SalBow1G5284 Salvia bowleyana HOM05D000087 ORTHO05D005735 4.4e-10 71.6 73 60.3
CSS0033050 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 3.1e-08 65.5 77 48.1
Medtr3g080660 Medicago truncatula HOM05D000087 ORTHO05D005735 3.5e-07 62.0 96 37.5
SalBow7G0393 Salvia bowleyana HOM05D022560 ORTHO05D005735 3.5e-07 62.0 65 56.9
SalBow4G2543 Salvia bowleyana HOM05D003568 ORTHO05D004104 7.8e-07 60.8 65 52.3
MBI04_g04803_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.7e-06 59.7 107 37.4
CSS0025060 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.3e-06 59.3 125 35.2


User provided reference genes

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