Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 4.1e-248 860.9 426 100.0
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 2.6e-186 655.6 427 74.7
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 1.4e-184 649.8 429 73.0
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 1.4e-184 649.8 426 73.7
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 1.2e-183 646.7 427 73.8
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 1.6e-180 636.3 426 72.3
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 8.1e-180 634.0 426 72.3
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 3.1e-179 632.1 427 72.1
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 4.0e-179 631.7 408 74.5
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 5.3e-179 631.3 429 71.8
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 6.9e-179 630.9 429 71.8
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 5.8e-178 627.9 426 71.4
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 2.9e-177 625.5 423 74.9
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 3.8e-177 625.2 423 74.9
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 6.4e-177 624.4 423 71.2
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 6.4e-177 624.4 427 71.2
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 1.1e-176 623.6 457 68.5
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 1.4e-176 623.2 427 72.8
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 1.4e-176 623.2 428 70.8
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 3.2e-176 622.1 427 71.0
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 5.5e-176 621.3 427 70.5
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 9.3e-176 620.5 426 69.7
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 2.7e-175 619.0 426 71.6
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 6.0e-175 617.8 431 70.3
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 1.0e-174 617.1 424 72.9
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 5.6e-173 611.3 427 67.9
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 1.1e-171 607.1 426 71.6
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 1.8e-171 606.3 424 69.8
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 4.0e-171 605.1 426 70.9
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 4.0e-171 605.1 439 67.7
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 1.2e-170 603.6 435 67.1
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 1.3e-169 600.1 423 72.1
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 2.9e-169 599.0 423 68.3
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 1.4e-168 596.7 387 77.3
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 2.5e-168 595.9 426 71.4
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 2.5e-168 595.9 437 70.3
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 4.2e-168 595.1 406 70.9
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 1.2e-167 593.6 410 69.8
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 6.0e-167 591.3 408 69.1
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 7.9e-167 590.9 435 65.5
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 2.3e-166 589.3 424 69.3
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 2.3e-166 589.3 390 72.8
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 3.9e-166 588.6 426 64.8
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 3.9e-166 588.6 408 69.4
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 5.1e-166 588.2 408 68.9
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 5.1e-166 588.2 427 65.8
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 6.7e-166 587.8 408 68.4
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 6.7e-166 587.8 435 65.1
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 8.7e-166 587.4 413 67.8
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 1.9e-165 586.3 409 68.2
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 5.7e-165 584.7 409 67.5
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 7.4e-165 584.3 430 65.8
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 2.2e-164 582.8 423 66.7
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 4.8e-164 581.6 427 66.5
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 1.1e-163 580.5 424 67.2
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 1.8e-163 579.7 411 66.9
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 1.8e-163 579.7 478 63.2
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 4.1e-163 578.6 426 67.1
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 4.1e-163 578.6 413 70.0
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 4.1e-163 578.6 425 67.1
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 1.2e-162 577.0 424 66.7
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 1.3e-161 573.5 431 63.8
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 2.2e-161 572.8 448 65.2
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 6.5e-161 571.2 423 65.5
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 8.5e-161 570.9 426 66.7
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 1.1e-160 570.5 427 65.6
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 1.4e-160 570.1 419 65.9
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 2.5e-160 569.3 417 67.6
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 1.2e-159 567.0 442 66.1
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 1.6e-159 566.6 423 64.8
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 4.6e-159 565.1 454 64.8
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 6.1e-159 564.7 419 67.1
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 7.9e-159 564.3 424 67.9
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 7.9e-159 564.3 427 67.7
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 3.9e-158 562.0 431 66.4
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 8.8e-158 560.8 395 70.4
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 8.8e-158 560.8 427 65.1
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 1.1e-157 560.5 472 62.7
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 4.3e-157 558.5 424 65.6
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 5.9e-154 548.1 390 70.3
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 5.9e-154 548.1 426 65.7
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 1.0e-153 547.4 411 66.9
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 1.1e-152 543.9 393 67.9
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 2.5e-152 542.7 390 66.4
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 4.2e-152 542.0 426 63.8
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.4e-150 537.0 426 64.1
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 3.9e-150 535.4 423 61.7
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 3.3e-149 532.3 420 61.4
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 9.7e-149 530.8 426 64.1
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 1.4e-147 526.9 426 62.9
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.2e-145 519.6 466 59.0
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 2.2e-140 503.1 340 69.7
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 3.2e-136 489.2 419 59.9
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 2.6e-133 479.6 339 66.4
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.1e-131 474.2 301 71.1
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 3.1e-131 472.6 424 57.1
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 7.0e-131 471.5 316 68.4
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 7.0e-131 471.5 299 69.9
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 2.5e-128 463.0 310 71.6
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 1.2e-127 460.7 284 74.3
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 2.1e-127 459.9 423 55.6
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 3.6e-127 459.1 437 58.1
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 2.3e-126 456.4 341 64.8
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 7.2e-120 434.9 420 55.5
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 1.6e-119 433.7 426 50.5
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.1e-119 433.3 326 64.4
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 4.9e-116 422.2 422 50.0
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 5.4e-115 418.7 422 49.8
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 2.5e-112 409.8 278 73.0
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 6.4e-100 368.6 319 58.9
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 1.3e-97 360.9 317 53.9
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 4.1e-91 339.3 301 57.5
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 3.2e-83 313.2 278 62.6
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 1.5e-77 294.3 183 67.8
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 3.3e-72 276.6 455 38.0
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 4.2e-67 259.6 374 40.4
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 5.6e-64 249.2 226 48.7
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 3.5e-58 229.9 575 29.2
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 6.0e-58 229.2 419 35.3
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 1.3e-52 211.5 197 53.8
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 9.0e-46 188.7 253 44.3
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 5.0e-44 183.0 125 70.4
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 1.4e-41 174.9 129 67.4
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 7.4e-40 169.1 119 72.3
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 1.7e-36 157.9 115 66.1
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 1.2e-29 135.2 130 60.0
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 5.5e-27 126.3 146 51.4
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 7.4e-24 115.9 121 47.9
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 1.8e-22 111.3 252 32.9
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 6.5e-12 76.3 60 60.0
CDE05G3540 Ceratophyllum demersum HOM05D005744 ORTHO05D130478 5.7e-08 63.2 120 39.2
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 7.5e-08 62.8 39 66.7
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 2.2e-07 61.2 57 59.6


User provided reference genes

Program Settings