Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g16860 Coffea canephora HOM05D007467 ORTHO05D009441 1.5e-129 466.5 285 100.0
CSS0030138 Camellia sinensis var. sinensis HOM05D007467 ORTHO05D009441 1.3e-67 260.8 326 55.8
Peaxi162Scf00074g00113 Petunia axillaris HOM05D007467 ORTHO05D009441 2.4e-66 256.5 330 56.1
PGSC0003DMG400012234 Solanum tuberosum HOM05D007467 ORTHO05D009441 2.0e-65 253.4 309 58.9
Duzib084G1076 Durio zibethinus HOM05D007467 ORTHO05D009441 2.6e-65 253.1 329 49.2
CAN.G567.94 Capsicum annuum HOM05D007467 ORTHO05D009441 5.8e-65 251.9 316 55.4
Duzib205G1912 Durio zibethinus HOM05D007467 ORTHO05D009441 9.3e-63 244.6 339 52.5
QL02p027667 Quercus lobata HOM05D007467 ORTHO05D009441 1.2e-62 244.2 360 50.0
Oeu013372.1 Olea europaea HOM05D007467 ORTHO05D009441 2.3e-61 240.0 320 54.4
RcHm_v2.0_Chr7g0187371 Rosa chinensis HOM05D007467 ORTHO05D009441 3.0e-61 239.6 279 55.2
Potri.001G082600 Populus trichocarpa HOM05D007467 ORTHO05D009441 1.1e-60 237.7 344 50.9
FAN04G1879 Fragaria x ananassa HOM05D007467 ORTHO05D009441 3.3e-60 236.1 306 54.2
Thecc.03G219300 Theobroma cacao HOM05D007467 ORTHO05D009441 3.3e-60 236.1 346 51.2
Prupe.5G131500 Prunus persica HOM05D007467 ORTHO05D009441 7.4e-60 235.0 368 47.8
FAN13G1608 Fragaria x ananassa HOM05D007467 ORTHO05D009441 1.3e-59 234.2 279 56.6
FvH4_5g10770 Fragaria vesca HOM05D007467 ORTHO05D009441 6.2e-59 231.9 279 56.3
FAN18G0937 Fragaria x ananassa HOM05D007467 ORTHO05D009441 6.2e-59 231.9 279 56.3
Cfa011912 Carpinus fangiana HOM05D007467 ORTHO05D009441 1.1e-58 231.1 352 50.6
FAN08G2920 Fragaria x ananassa HOM05D007467 ORTHO05D009441 2.4e-58 229.9 279 55.9
Dinv18747 Davidia involucrata HOM05D007467 ORTHO05D009441 3.1e-58 229.6 268 60.4
Sabra01G0059300 Salix brachista HOM05D007467 ORTHO05D009441 3.1e-58 229.6 347 50.4
MSTRG.13707 Avicennia marina HOM05D007467 ORTHO05D009441 1.2e-57 227.6 332 52.4
Lsat_1_v5_gn_6_10100 Lactuca sativa HOM05D007467 ORTHO05D009441 1.5e-57 227.3 311 47.9
Atru.chr9.1852 Acer truncatum HOM05D007467 ORTHO05D009441 5.8e-57 225.3 341 50.1
MD06G1120900 Malus domestica HOM05D007467 ORTHO05D009441 7.6e-57 224.9 349 48.1
Ciclev10020958m.g Citrus clementina HOM05D007467 ORTHO05D009441 1.3e-56 224.2 343 51.6
HanXRQChr07g0192371 Helianthus annuus HOM05D007467 ORTHO05D009441 3.8e-56 222.6 276 56.2
Haze_09186 Corylus avellana HOM05D007467 ORTHO05D009441 1.1e-55 221.1 341 49.0
DCAR_006558 Daucus carota HOM05D007467 ORTHO05D009441 1.9e-55 220.3 323 43.7
Manes.02G001700 Manihot esculenta HOM05D007467 ORTHO05D009441 2.5e-55 219.9 317 47.0
MD14G1137500 Malus domestica HOM05D007467 ORTHO05D009441 5.5e-55 218.8 347 42.4
Gohir.A12G240800 Gossypium hirsutum HOM05D007467 ORTHO05D009441 6.0e-54 215.3 277 48.4
ECA233G1457 Erigeron canadensis HOM05D007467 ORTHO05D009441 1.0e-53 214.5 277 55.2
Oeu042839.1 Olea europaea HOM05D007467 ORTHO05D009441 3.0e-53 213.0 321 51.7
Sabra03G0107500 Salix brachista HOM05D007467 ORTHO05D009441 8.7e-53 211.5 335 49.0
Gohir.D12G242100 Gossypium hirsutum HOM05D007467 ORTHO05D009441 1.1e-52 211.1 286 46.9
Gorai.008G259400 Gossypium raimondii HOM05D007467 ORTHO05D009441 2.5e-52 209.9 277 47.3
TAR636G1420 Trochodendron aralioides HOM05D007467 ORTHO05D009441 4.8e-51 205.7 282 47.5
Lj2P155T22 Lonicera japonica HOM05D007467 ORTHO05D009441 1.8e-50 203.8 289 55.4
Nn1g00417 Nelumbo nucifera HOM05D007467 ORTHO05D009441 1.8e-50 203.8 334 41.0
TAR629G1879 Trochodendron aralioides HOM05D007467 ORTHO05D009441 1.5e-49 200.7 301 52.2
Sopen08g031410 Solanum pennellii HOM05D007467 ORTHO05D009441 2.0e-49 200.3 251 55.8
Solyc08g083220.1 Solanum lycopersicum HOM05D007467 ORTHO05D009441 3.4e-49 199.5 253 55.3
Hma1.2p1_0456F.1_g156740 Hydrangea macrophylla HOM05D007467 ORTHO05D009441 1.7e-48 197.2 289 51.6
Aqoxy7G00009 Aquilegia oxysepala HOM05D007467 ORTHO05D009441 2.2e-48 196.8 301 52.2
GSVIVG01019666001 Vitis vinifera HOM05D007467 ORTHO05D009441 1.2e-46 191.0 197 68.5
CANSAT21G0614 Cannabis sativa HOM05D007467 ORTHO05D009441 1.6e-46 190.7 316 46.5
COL.COLO4_10812 Corchorus olitorius HOM05D007467 ORTHO05D009441 6.0e-46 188.7 203 55.2
CiPaw.11G111200 Carya illinoinensis HOM05D007467 ORTHO05D009441 6.7e-45 185.3 198 65.7
TWI60G0745 Tripterygium wilfordii HOM05D007467 ORTHO05D009441 1.1e-44 184.5 340 42.9
vmacro11497 Vaccinium macrocarpon HOM05D007467 ORTHO05D009441 1.6e-43 180.6 248 56.0
Rhsim02G0253000 Rhododendron simsii HOM05D007467 ORTHO05D009441 3.1e-42 176.4 238 55.9
PGR042G1595 Punica granatum HOM05D007467 ORTHO05D009441 6.9e-42 175.3 349 45.0
TWI15G0957 Tripterygium wilfordii HOM05D007467 ORTHO05D009441 1.2e-41 174.5 344 37.5
Sp2g00870 Schrenkiella parvula HOM05D007467 ORTHO05D009441 7.7e-41 171.8 275 51.6
Aa31LG2G1740 Aethionema arabicum HOM05D007467 ORTHO05D009441 1.3e-40 171.0 281 47.7
BcaC04g22507 Brassica carinata HOM05D007467 ORTHO05D009441 2.2e-40 170.2 275 45.8
A09p15270 Brassica napus HOM05D007467 ORTHO05D009441 5.0e-40 169.1 247 53.0
BraA09t37173Z Brassica rapa HOM05D007467 ORTHO05D009441 5.0e-40 169.1 247 53.0
Nitab4.5_0002720g0040 Nicotiana tabacum HOM05D007467 ORTHO05D009441 2.5e-39 166.8 237 54.9
Nitab4.5_0008141g0040 Nicotiana tabacum HOM05D007467 ORTHO05D009441 2.5e-39 166.8 237 55.3
Thhalv10023631m.g Eutrema salsugineum HOM05D007467 ORTHO05D009441 3.2e-39 166.4 258 46.1
C09p18550 Brassica napus HOM05D007467 ORTHO05D009441 4.2e-39 166.0 275 48.7
BolC9t54751H Brassica oleracea HOM05D007467 ORTHO05D009441 4.2e-39 166.0 275 48.7
SGA_v2.0_scaffold267G46175 Striga asiatica HOM05D007467 ORTHO05D009441 5.5e-39 165.6 294 45.2
Gorai.006G205400 Gossypium raimondii HOM05D007467 ORTHO05D009441 4.6e-38 162.5 277 49.5
Eucgr.E01052 Eucalyptus grandis HOM05D007467 ORTHO05D009441 7.9e-38 161.8 383 43.1
Gohir.A09G188250 Gossypium hirsutum HOM05D007467 ORTHO05D009441 7.9e-38 161.8 274 50.4
Gohir.D09G183100 Gossypium hirsutum HOM05D007467 ORTHO05D009441 1.4e-37 161.0 277 49.1
CARHR046220 Cardamine hirsuta HOM05D007467 ORTHO05D009441 1.1e-36 157.9 250 41.2
Nn3g18852 Nelumbo nucifera HOM05D007467 ORTHO05D009441 2.0e-36 157.1 307 44.0
Potri.003G147900 Populus trichocarpa HOM05D007467 ORTHO05D009441 7.4e-36 155.2 256 50.8
BcaB07g31413 Brassica carinata HOM05D007467 ORTHO05D009441 2.2e-35 153.7 247 53.4
Carub.0002s0004 Capsella rubella HOM05D007467 ORTHO05D009441 3.7e-35 152.9 282 46.5
MBI04_g15581_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 6.9e-34 148.7 225 40.0
MBI04_g43054_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 9.1e-34 148.3 201 42.3
MBI12_g21574_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 9.1e-34 148.3 276 45.3
AL2G10070 Arabidopsis lyrata HOM05D007467 ORTHO05D009441 7.7e-33 145.2 282 49.6
Sed0003485 Sechium edule HOM05D007467 ORTHO05D009441 5.0e-32 142.5 287 44.3
THA.LOC104823626 Tarenaya hassleriana HOM05D007467 ORTHO05D009441 8.5e-32 141.7 292 45.9
AT1G64690 Arabidopsis thaliana HOM05D007467 ORTHO05D009441 2.5e-31 140.2 278 47.5
PSO782G5165 Papaver somniferum HOM05D007467 ORTHO05D009441 9.4e-31 138.3 294 42.2
CsaV3_5G001620 Cucumis sativus L. HOM05D007467 ORTHO05D009441 1.8e-29 134.0 310 41.6
MELO3C005789.2 Cucumis melo HOM05D007467 ORTHO05D009441 3.0e-29 133.3 315 40.6
PSO478G5135 Papaver somniferum HOM05D007467 ORTHO05D009441 1.7e-27 127.5 301 37.2
ClCG01G001480 Citrullus lanatus HOM05D007467 ORTHO05D009441 1.1e-26 124.8 246 47.2
Oeu022032.1 Olea europaea HOM05D007467 ORTHO05D009441 2.6e-25 120.2 125 54.4
PGSC0003DMG400013732 Solanum tuberosum HOM05D007467 ORTHO05D009441 7.4e-20 102.1 87 66.7
Actinidia22211 Actinidia chinensis HOM05D007467 ORTHO05D009441 2.8e-19 100.1 64 75.0
CDE02G3312 Ceratophyllum demersum HOM05D007467 ORTHO05D009441 1.2e-17 94.7 277 30.0
ATR0579G156 Amborella trichopoda HOM05D007467 ORTHO05D009441 2.0e-17 94.0 257 30.4
AUR62007067 Chenopodium quinoa HOM05D007467 ORTHO05D009441 3.8e-16 89.7 230 30.9
AUR62019932 Chenopodium quinoa HOM05D007467 ORTHO05D009441 3.8e-16 89.7 238 31.1
Zm00001eb023700 Zea mays HOM05D007467 ORTHO05D009441 2.5e-15 87.0 290 34.5
ClCG00G001110 Citrullus lanatus HOM05D007467 ORTHO05D009441 4.7e-14 82.8 139 55.4
CDE11G0649 Ceratophyllum demersum HOM05D007467 ORTHO05D009441 4.0e-13 79.7 256 32.8
EL10Ac5g12411 Beta vulgaris HOM05D007467 ORTHO05D009441 1.7e-11 74.3 185 33.0
Ah.12g053280 Amaranthus hybridus HOM05D007467 ORTHO05D009441 3.1e-10 70.1 290 29.3
Os10g0562600 Oryza sativa ssp. japonica HOM05D007467 ORTHO05D009441 2.5e-07 60.5 205 34.1
SEGI_05627 Sequoiadendron giganteum HOM05D002166 ORTHO05D002634 6.1e-06 55.8 81 40.7
BcaB07g31547 Brassica carinata HOM05D007467 ORTHO05D009441 8.0e-06 55.5 168 30.4


User provided reference genes

Program Settings