Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g16820 Coffea canephora HOM05D006482 ORTHO05D008149 4.1e-31 137.5 73 100.0
Dinv18742 Davidia involucrata HOM05D006482 ORTHO05D008149 1.2e-17 92.8 72 68.1
Actinidia27284 Actinidia chinensis HOM05D000567 ORTHO05D000767 9.8e-17 89.7 69 66.7
Nitab4.5_0008141g0050 Nicotiana tabacum HOM05D006482 ORTHO05D008149 1.1e-15 86.3 70 65.7
TAR374G1512 Trochodendron aralioides HOM05D006482 ORTHO05D008149 1.4e-15 85.9 69 65.2
Migut.E00300 Erythranthe guttata HOM05D006482 ORTHO05D008149 3.2e-15 84.7 72 65.3
TAR629G1047 Trochodendron aralioides HOM05D006482 ORTHO05D008149 3.2e-15 84.7 70 64.3
CSS0017170 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 5.4e-15 84.0 71 63.4
PGSC0003DMG400012236 Solanum tuberosum HOM05D006482 ORTHO05D008149 7.0e-15 83.6 70 64.3
Oeu010737.1 Olea europaea HOM05D006482 ORTHO05D008149 1.2e-14 82.8 70 61.4
Nitab4.5_0002720g0020 Nicotiana tabacum HOM05D006482 ORTHO05D008149 1.6e-14 82.4 70 62.9
Rhsim03G0214200 Rhododendron simsii HOM05D006482 ORTHO05D008149 2.0e-14 82.0 71 57.7
vmacro06428 Vaccinium macrocarpon HOM05D006482 ORTHO05D008149 2.7e-14 81.6 71 54.9
Lsat_1_v5_gn_6_10060 Lactuca sativa HOM05D006482 ORTHO05D008149 4.6e-14 80.9 71 62.0
CSS0001288 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 7.8e-14 80.1 70 60.0
Nn3g18841 Nelumbo nucifera HOM05D006482 ORTHO05D008149 7.8e-14 80.1 70 62.9
Medtr3g092270 Medicago truncatula HOM05D006482 ORTHO05D008149 1.0e-13 79.7 66 59.1
Solyc08g083200.3 Solanum lycopersicum HOM05D006482 ORTHO05D008149 1.0e-13 79.7 70 61.4
Sopen08g031390 Solanum pennellii HOM05D006482 ORTHO05D008149 1.3e-13 79.3 70 61.4
Glyma.04G230700 Glycine max HOM05D006482 ORTHO05D008149 1.7e-13 79.0 70 55.7
PSO063G1999 Papaver somniferum HOM05D006482 ORTHO05D008149 2.3e-13 78.6 71 56.3
GSVIVG01038627001 Vitis vinifera HOM05D006482 ORTHO05D008149 2.3e-13 78.6 70 60.0
Peaxi162Scf00074g00224 Petunia axillaris HOM05D006482 ORTHO05D008149 2.9e-13 78.2 70 62.9
SalBow3G2365 Salvia bowleyana HOM05D006482 ORTHO05D008149 2.9e-13 78.2 72 59.7
CSS0049934 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 8.6e-13 76.6 70 58.6
ECA233G2670 Erigeron canadensis HOM05D006482 ORTHO05D008149 8.6e-13 76.6 66 62.1
Lj1g0026941 Lotus japonicus HOM05D006482 ORTHO05D008149 8.6e-13 76.6 70 55.7
QL05p036199 Quercus lobata HOM05D006482 ORTHO05D008149 8.6e-13 76.6 70 60.0
TPR.G14847 Trifolium pratense HOM05D006482 ORTHO05D008149 8.6e-13 76.6 63 61.9
ClCG01G000130 Citrullus lanatus HOM05D006482 ORTHO05D008149 1.1e-12 76.3 71 57.7
HanXRQChr07g0192381 Helianthus annuus HOM05D006482 ORTHO05D008149 1.5e-12 75.9 71 59.2
Phvul.009G047100 Phaseolus vulgaris HOM05D006482 ORTHO05D008149 1.5e-12 75.9 70 57.1
Hma1.2p1_0456F.1_g156710 Hydrangea macrophylla HOM05D006482 ORTHO05D008149 2.5e-12 75.1 70 58.6
Manes.01G041500 Manihot esculenta HOM05D006482 ORTHO05D008149 2.5e-12 75.1 70 57.1
Prupe.2G317400 Prunus persica HOM05D006482 ORTHO05D008149 2.5e-12 75.1 71 54.9
arahy.Tifrunner.gnm1.ann1.ZIU4UI Arachis hypogaea HOM05D006482 ORTHO05D008149 3.3e-12 74.7 71 53.5
CsaV3_5G000030 Cucumis sativus L. HOM05D006482 ORTHO05D008149 3.3e-12 74.7 71 59.2
FvH4_7g32700 Fragaria vesca HOM05D006482 ORTHO05D008149 3.3e-12 74.7 71 56.3
FAN01G3112 Fragaria x ananassa HOM05D006482 ORTHO05D008149 3.3e-12 74.7 71 56.3
FAN03G2872 Fragaria x ananassa HOM05D006482 ORTHO05D008149 3.3e-12 74.7 71 56.3
Atru.chr12.2369 Acer truncatum HOM05D006482 ORTHO05D008149 4.3e-12 74.3 70 55.7
CANSAT21G0227 Cannabis sativa HOM05D006482 ORTHO05D008149 4.3e-12 74.3 70 58.6
CDE09G1364 Ceratophyllum demersum HOM05D001294 ORTHO05D001178 4.3e-12 74.3 65 56.9
Dinv29224 Davidia involucrata HOM05D006482 ORTHO05D008149 4.3e-12 74.3 63 57.1
Psat5g073480 Pisum sativum HOM05D006482 ORTHO05D008149 4.3e-12 74.3 70 54.3
RcHm_v2.0_Chr1g0382671 Rosa chinensis HOM05D006482 ORTHO05D008149 4.3e-12 74.3 71 56.3
arahy.Tifrunner.gnm1.ann1.CVH3M3 Arachis hypogaea HOM05D006482 ORTHO05D008149 5.6e-12 73.9 71 53.5
MELO3C005924.2 Cucumis melo HOM05D006482 ORTHO05D008149 5.6e-12 73.9 71 57.7
MD01G1227400 Malus domestica HOM05D006482 ORTHO05D008149 7.3e-12 73.6 71 54.9
Sed0025475 Sechium edule HOM05D006482 ORTHO05D008149 9.5e-12 73.2 71 56.3
Thecc.03G206900 Theobroma cacao HOM05D006482 ORTHO05D008149 9.5e-12 73.2 71 53.5
Ciclev10023193m.g Citrus clementina HOM05D006482 ORTHO05D008149 1.6e-11 72.4 70 55.7
Potri.012G022900 Populus trichocarpa HOM05D006482 ORTHO05D008149 2.1e-11 72.0 70 57.1
TWI14G0741 Tripterygium wilfordii HOM05D006482 ORTHO05D008149 2.1e-11 72.0 68 55.9
unitig_699.g19497 Utricularia gibba HOM05D006482 ORTHO05D008149 2.1e-11 72.0 70 54.3
Potri.015G006500 Populus trichocarpa HOM05D006482 ORTHO05D008149 2.8e-11 71.6 71 56.3
PGR142G0199 Punica granatum HOM05D006482 ORTHO05D008149 2.8e-11 71.6 69 53.6
Hund21041 Selenicereus undatus HOM05D006482 ORTHO05D008149 2.8e-11 71.6 69 58.0
Ah.13g070630 Amaranthus hybridus HOM05D006482 ORTHO05D008149 4.7e-11 70.9 71 56.3
EL10Ac3g05199 Beta vulgaris HOM05D006482 ORTHO05D008149 6.1e-11 70.5 70 54.3
Sabra15G0004500 Salix brachista HOM05D006482 ORTHO05D008149 8.0e-11 70.1 71 54.9
TWI39G0373 Tripterygium wilfordii HOM05D006482 ORTHO05D008149 1.4e-10 69.3 70 55.7
Aa31LG3G9780 Aethionema arabicum HOM05D006482 ORTHO05D008149 1.8e-10 68.9 70 55.7
CiPaw.05G203100 Carya illinoinensis HOM05D006482 ORTHO05D008149 1.8e-10 68.9 68 54.4
Glyma.04G154600 Glycine max HOM05D006482 ORTHO05D008149 1.8e-10 68.9 66 51.5
Lalb_Chr11g0067291 Lupinus albus HOM05D006482 ORTHO05D008149 1.8e-10 68.9 70 51.4
COL.COLO4_14353 Corchorus olitorius HOM05D006482 ORTHO05D008149 2.3e-10 68.6 70 50.0
Lalb_Chr23g0271851 Lupinus albus HOM05D006482 ORTHO05D008149 2.3e-10 68.6 70 51.4
Sed0001965 Sechium edule HOM05D006482 ORTHO05D008149 2.3e-10 68.6 58 63.8
Duzib205G0332 Durio zibethinus HOM05D006482 ORTHO05D008149 3.1e-10 68.2 70 51.4
A03p15030 Brassica napus HOM05D006482 ORTHO05D008149 4.0e-10 67.8 63 58.7
BraA03t10797Z Brassica rapa HOM05D006482 ORTHO05D008149 4.0e-10 67.8 63 58.7
Eucgr.K00422 Eucalyptus grandis HOM05D006482 ORTHO05D008149 4.0e-10 67.8 71 53.5
Gohir.A08G103900 Gossypium hirsutum HOM05D006482 ORTHO05D008149 4.0e-10 67.8 70 51.4
Glyma.06G134500 Glycine max HOM05D006482 ORTHO05D008149 5.2e-10 67.4 70 50.0
C03p17520 Brassica napus HOM05D006482 ORTHO05D008149 8.9e-10 66.6 63 57.1
BolC3t14165H Brassica oleracea HOM05D006482 ORTHO05D008149 8.9e-10 66.6 63 57.1
AL8G28600 Arabidopsis lyrata HOM05D006482 ORTHO05D008149 1.2e-09 66.2 63 57.1
Gohir.D08G115300 Gossypium hirsutum HOM05D006482 ORTHO05D008149 1.2e-09 66.2 70 50.0
Gorai.004G124200 Gossypium raimondii HOM05D006482 ORTHO05D008149 1.2e-09 66.2 70 50.0
BcaC01g06263 Brassica carinata HOM05D006482 ORTHO05D008149 1.5e-09 65.9 63 57.1
SEGI_31465 Sequoiadendron giganteum HOM05D006482 ORTHO05D008149 1.5e-09 65.9 61 55.7
Carub.0008s1398 Capsella rubella HOM05D006482 ORTHO05D008149 2.0e-09 65.5 61 59.0
CARHR266810 Cardamine hirsuta HOM05D006482 ORTHO05D008149 2.0e-09 65.5 61 59.0
Thhalv10015198m.g Eutrema salsugineum HOM05D006482 ORTHO05D008149 2.0e-09 65.5 61 59.0
Gorai.008G265700 Gossypium raimondii HOM05D006482 ORTHO05D008149 2.0e-09 65.5 70 51.4
Sp6g15770 Schrenkiella parvula HOM05D006482 ORTHO05D008149 2.0e-09 65.5 61 59.0
Sc19g0000660 Simmondsia chinensis HOM05D006482 ORTHO05D008149 2.0e-09 65.5 63 58.7
BcaB01g04252 Brassica carinata HOM05D006482 ORTHO05D008149 3.4e-09 64.7 63 55.6
THA.LOC109117152 Tarenaya hassleriana HOM05D006482 ORTHO05D008149 3.4e-09 64.7 63 55.6
A02p10930 Brassica napus HOM05D006482 ORTHO05D008149 4.4e-09 64.3 69 52.2
Rhsim07G0077300 Rhododendron simsii HOM05D006482 ORTHO05D008149 4.4e-09 64.3 41 80.5
AT5G53650 Arabidopsis thaliana HOM05D006482 ORTHO05D008149 5.8e-09 63.9 61 57.4
BcaB05g22064 Brassica carinata HOM05D006482 ORTHO05D008149 5.8e-09 63.9 63 55.6
BraA02t06158Z Brassica rapa HOM05D006482 ORTHO05D008149 5.8e-09 63.9 61 57.4
Hund09702 Selenicereus undatus HOM05D006482 ORTHO05D008149 9.8e-09 63.2 70 50.0
BcaC03g14399 Brassica carinata HOM05D006482 ORTHO05D008149 1.3e-08 62.8 57 59.6
C02p18140 Brassica napus HOM05D006482 ORTHO05D008149 1.3e-08 62.8 57 59.6
BolC2t07944H Brassica oleracea HOM05D006482 ORTHO05D008149 1.3e-08 62.8 57 59.6
Gohir.A12G246900 Gossypium hirsutum HOM05D006482 ORTHO05D008149 1.7e-08 62.4 70 47.1
vmacro13845 Vaccinium macrocarpon HOM05D006482 ORTHO05D008149 1.7e-08 62.4 54 66.7
CiPaw.06G042200 Carya illinoinensis HOM05D006482 ORTHO05D008149 6.4e-08 60.5 68 47.1
Sc13g0010170 Simmondsia chinensis HOM05D006482 ORTHO05D008149 8.3e-08 60.1 71 46.5
CSS0015195 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 1.1e-07 59.7 71 54.9
HPP92_020659 Vanilla planifolia HOM05D001695 ORTHO05D002735 1.1e-07 59.7 73 47.9
AUR62035606 Chenopodium quinoa HOM05D006482 ORTHO05D008149 1.4e-07 59.3 94 43.6
MD07G1297700 Malus domestica HOM05D006482 ORTHO05D008149 1.4e-07 59.3 97 40.2
Duzib068G1219 Durio zibethinus HOM05D006482 ORTHO05D008149 3.2e-07 58.2 85 44.7
CSS0007382 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 9.2e-07 56.6 41 70.7
AUR62006020 Chenopodium quinoa HOM05D006482 ORTHO05D008149 9.2e-07 56.6 41 70.7
CDE11G0870 Ceratophyllum demersum HOM05D006482 ORTHO05D008149 1.2e-06 56.2 99 39.4
FAN17G0467 Fragaria x ananassa HOM05D006482 ORTHO05D008149 1.2e-06 56.2 42 69.0
ATR0579G147 Amborella trichopoda HOM05D006482 ORTHO05D008149 2.7e-06 55.1 41 65.9
CSS0018303 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 2.7e-06 55.1 41 68.3
QL09p007382 Quercus lobata HOM05D006482 ORTHO05D008149 3.5e-06 54.7 41 68.3
Haze_00279 Corylus avellana HOM05D006482 ORTHO05D008149 4.6e-06 54.3 41 70.7
DCAR_006554 Daucus carota HOM05D006482 ORTHO05D008149 4.6e-06 54.3 51 56.9
Os05g0535700 Oryza sativa ssp. japonica HOM05D006482 ORTHO05D008149 4.6e-06 54.3 73 43.8
Sabra12G0010900 Salix brachista HOM05D006482 ORTHO05D008149 7.8e-06 53.5 45 64.4


User provided reference genes

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