Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 1.5e-218 762.7 425 100.0
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 4.5e-170 601.7 429 80.9
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 1.8e-166 589.7 429 78.1
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 4.3e-165 585.1 427 77.8
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 5.6e-165 584.7 430 78.6
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 7.4e-165 584.3 427 78.7
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 1.3e-164 583.6 427 77.8
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 8.2e-164 580.9 427 78.7
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 1.1e-163 580.5 428 78.0
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 2.4e-163 579.3 468 68.6
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 9.0e-163 577.4 427 78.2
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 1.5e-162 576.6 426 79.3
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 2.6e-162 575.9 427 77.3
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 3.4e-162 575.5 426 79.8
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 3.4e-162 575.5 439 69.9
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 5.8e-162 574.7 426 77.0
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 7.6e-162 574.3 425 77.6
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 6.5e-161 571.2 421 77.7
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 1.9e-160 569.7 429 76.2
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 1.9e-160 569.7 427 76.6
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 1.9e-160 569.7 388 83.8
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 2.5e-160 569.3 423 80.4
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 1.2e-159 567.0 426 78.2
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 3.5e-159 565.5 426 79.1
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 3.5e-159 565.5 402 80.8
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 1.0e-158 563.9 423 79.4
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 1.3e-158 563.5 429 77.9
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 3.0e-158 562.4 407 79.6
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 3.0e-158 562.4 425 78.1
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 1.5e-157 560.1 433 76.2
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 1.9e-157 559.7 430 78.1
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 3.3e-157 558.9 427 76.1
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 2.8e-156 555.8 425 77.6
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 2.8e-156 555.8 432 75.9
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 4.8e-156 555.1 458 72.1
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 8.2e-156 554.3 425 77.4
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 1.1e-155 553.9 425 77.4
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 2.4e-155 552.7 423 77.3
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 1.5e-154 550.1 403 79.2
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 2.2e-153 546.2 425 75.8
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 2.9e-153 545.8 425 72.5
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 2.9e-153 545.8 437 73.2
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 2.9e-153 545.8 431 74.7
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 3.8e-153 545.4 427 75.2
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 5.0e-153 545.0 437 74.1
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 6.5e-153 544.7 432 75.2
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 6.5e-153 544.7 436 74.5
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 1.1e-152 543.9 382 79.8
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 1.9e-152 543.1 433 75.3
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 3.2e-152 542.3 433 75.1
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 5.5e-152 541.6 427 75.9
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 7.2e-152 541.2 431 76.3
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.7e-151 539.3 434 74.7
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 6.1e-151 538.1 422 76.1
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 7.9e-151 537.7 435 73.1
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 1.0e-150 537.3 426 75.8
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 5.1e-150 535.0 436 73.9
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 8.8e-150 534.3 429 74.1
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 1.1e-149 533.9 426 75.6
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 5.7e-149 531.6 421 74.8
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 1.3e-148 530.4 426 74.2
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 1.3e-148 530.4 427 75.6
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 3.7e-148 528.9 425 75.3
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 3.7e-148 528.9 431 74.5
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 8.2e-148 527.7 489 61.8
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 6.9e-147 524.6 427 73.3
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 9.1e-147 524.2 426 73.9
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 3.4e-146 522.3 425 75.3
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 4.5e-146 521.9 357 78.4
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 1.7e-145 520.0 443 72.0
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 2.2e-145 519.6 396 78.3
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 2.9e-145 519.2 430 73.5
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.8e-145 518.8 426 73.9
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.4e-144 516.9 426 73.5
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.2e-144 515.4 407 75.4
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 1.2e-143 513.8 427 71.9
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 2.1e-143 513.1 439 66.3
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 2.1e-143 513.1 429 73.2
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.7e-143 512.7 407 74.9
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 6.1e-143 511.5 425 69.6
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 1.8e-142 510.0 437 72.3
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 5.1e-142 508.4 427 71.2
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 1.3e-140 503.8 430 65.3
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 3.7e-140 502.3 426 69.5
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 1.2e-138 497.3 426 69.0
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 1.2e-138 497.3 426 69.0
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.5e-138 496.9 405 73.3
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 1.5e-138 496.9 425 68.0
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 2.6e-138 496.1 425 68.7
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 2.6e-138 496.1 460 69.6
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 1.0e-137 494.2 425 68.9
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 5.0e-137 491.9 421 68.9
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 6.5e-137 491.5 425 68.2
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 1.1e-136 490.7 426 69.5
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 1.1e-136 490.7 426 68.3
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 1.4e-136 490.3 421 68.6
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 1.4e-136 490.3 421 68.6
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 6.7e-134 481.5 426 70.7
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 8.8e-134 481.1 425 68.2
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.0e-133 479.9 423 70.9
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 4.4e-133 478.8 429 68.8
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.7e-132 476.9 423 70.7
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 1.7e-132 476.9 427 69.6
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.0e-129 467.6 440 68.0
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 2.9e-129 466.1 396 71.0
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 3.2e-128 462.6 425 68.2
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 4.2e-128 462.2 411 70.3
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 1.2e-127 460.7 464 64.4
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 6.1e-127 458.4 401 71.3
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 7.5e-125 451.4 470 57.4
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 2.2e-124 449.9 417 67.4
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 1.1e-123 447.6 426 66.2
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 2.9e-121 439.5 427 67.0
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 1.9e-120 436.8 414 67.6
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 7.2e-120 434.9 427 67.2
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 9.1e-115 417.9 326 76.4
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 8.0e-111 404.8 427 58.5
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 4.0e-110 402.5 327 77.4
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 3.4e-109 399.4 388 64.7
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 5.8e-101 372.1 308 67.9
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 1.9e-99 367.1 294 80.6
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 1.2e-98 364.4 330 60.0
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 7.8e-98 361.7 345 67.5
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 3.9e-97 359.4 392 55.6
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 4.0e-94 349.4 280 63.9
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 5.6e-88 328.9 600 41.3
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 1.6e-87 327.4 390 53.3
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 1.9e-83 313.9 285 73.0
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 4.7e-79 299.3 475 43.6
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 4.4e-77 292.7 264 61.4
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 2.1e-74 283.9 377 43.8
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 1.5e-53 214.5 131 81.7
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 6.0e-50 202.6 153 66.7
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 1.4e-46 191.4 182 57.1
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.9e-46 189.1 142 65.5
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.0e-45 187.6 142 64.8
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.7e-44 184.5 142 64.8
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.6e-39 167.9 169 55.0
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.1e-38 163.7 135 59.3
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 4.1e-38 163.3 135 60.0
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 2.1e-34 151.0 95 81.1
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.0e-33 147.1 172 50.0
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.7e-33 146.0 129 58.1
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 3.7e-31 140.2 306 32.7
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 5.5e-27 126.3 106 60.4
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.7e-25 119.4 74 77.0
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 9.7e-24 115.5 93 61.3
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 2.4e-22 110.9 68 80.9
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 1.9e-19 101.3 122 49.2
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 3.2e-19 100.5 210 32.4
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 1.2e-18 98.6 56 82.1
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 5.7e-16 89.7 55 76.4
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 3.1e-14 84.0 71 67.6
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 2.6e-13 80.9 52 78.8
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 2.5e-11 74.3 123 40.7
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 1.4e-09 68.6 57 64.9


User provided reference genes

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