Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g16690 Coffea canephora HOM05D007016 ORTHO05D008847 5.7e-133 477.6 248 100.0
Actinidia22202 Actinidia chinensis HOM05D007016 ORTHO05D008847 3.4e-69 265.8 249 58.2
Oeu022037.1 Olea europaea HOM05D007016 ORTHO05D008847 9.9e-69 264.2 259 57.9
Dinv34693 Davidia involucrata HOM05D007016 ORTHO05D008847 2.4e-67 259.6 256 58.6
Dinv12013 Davidia involucrata HOM05D007016 ORTHO05D008847 3.2e-67 259.2 256 58.2
Rhsim02G0251600 Rhododendron simsii HOM05D007016 ORTHO05D008847 2.1e-66 256.5 253 57.3
vmacro11507 Vaccinium macrocarpon HOM05D007016 ORTHO05D008847 3.0e-65 252.7 227 59.9
Migut.O00796 Erythranthe guttata HOM05D007016 ORTHO05D008847 8.6e-65 251.1 252 56.3
MD14G1125100 Malus domestica HOM05D007016 ORTHO05D008847 1.5e-64 250.4 252 54.4
Peaxi162Scf00074g00350 Petunia axillaris HOM05D000458 ORTHO05D000951 1.9e-64 250.0 237 59.9
GSVIVG01019642001 Vitis vinifera HOM05D007016 ORTHO05D008847 3.3e-64 249.2 209 61.7
Nitab4.5_0004251g0050 Nicotiana tabacum HOM05D007016 ORTHO05D008847 9.5e-64 247.7 256 55.9
Duzib084G0025 Durio zibethinus HOM05D000458 ORTHO05D000951 8.1e-63 244.6 214 58.9
SGA_v2.0_scaffold314G48366 Striga asiatica HOM05D007016 ORTHO05D008847 1.8e-62 243.4 213 59.6
Thecc.03G221900 Theobroma cacao HOM05D007016 ORTHO05D008847 3.4e-61 239.2 225 56.9
Eucgr.D01686 Eucalyptus grandis HOM05D007016 ORTHO05D008847 4.4e-61 238.8 207 58.5
Gorai.003G076500 Gossypium raimondii HOM05D007016 ORTHO05D008847 4.4e-61 238.8 209 57.4
PGR031G1249 Punica granatum HOM05D007016 ORTHO05D008847 4.4e-61 238.8 203 62.1
HanXRQChr06g0166831 Helianthus annuus HOM05D007016 ORTHO05D008847 1.3e-60 237.3 218 55.5
Prupe.5G128800 Prunus persica HOM05D007016 ORTHO05D008847 2.2e-60 236.5 252 54.4
MD06G1117700 Malus domestica HOM05D007016 ORTHO05D008847 2.9e-60 236.1 218 56.9
Cfa011932 Carpinus fangiana HOM05D007016 ORTHO05D008847 6.4e-60 235.0 230 55.7
FAN04G1313 Fragaria x ananassa HOM05D007016 ORTHO05D008847 1.1e-59 234.2 245 53.1
TAR375G0929 Trochodendron aralioides HOM05D007016 ORTHO05D008847 1.1e-59 234.2 211 59.7
Haze_14080 Corylus avellana HOM05D007016 ORTHO05D008847 1.9e-59 233.4 235 54.5
Duzib205G1809 Durio zibethinus HOM05D007016 ORTHO05D008847 3.2e-59 232.6 254 52.0
CiPaw.12G078100 Carya illinoinensis HOM05D007016 ORTHO05D008847 7.1e-59 231.5 195 59.0
FAN08G2008 Fragaria x ananassa HOM05D007016 ORTHO05D008847 1.2e-58 230.7 254 52.4
FvH4_5g11000 Fragaria vesca HOM05D007016 ORTHO05D008847 2.7e-58 229.6 253 51.4
arahy.Tifrunner.gnm1.ann1.CXQL6Y Arachis hypogaea HOM05D007016 ORTHO05D008847 4.6e-58 228.8 224 54.9
PSO339G2192 Papaver somniferum HOM05D007016 ORTHO05D008847 7.8e-58 228.0 233 54.1
arahy.Tifrunner.gnm1.ann1.6JL1AX Arachis hypogaea HOM05D007016 ORTHO05D008847 1.0e-57 227.6 224 54.9
COL.COLO4_10789 Corchorus olitorius HOM05D000458 ORTHO05D000951 1.0e-57 227.6 190 58.9
PSO339G4063 Papaver somniferum HOM05D007016 ORTHO05D008847 1.0e-57 227.6 233 54.5
Potri.003G146100 Populus trichocarpa HOM05D007016 ORTHO05D008847 1.7e-57 226.9 257 49.4
Sabra03G0106200 Salix brachista HOM05D007016 ORTHO05D008847 2.3e-57 226.5 247 50.6
Nitab4.5_0007063g0030 Nicotiana tabacum HOM05D007016 ORTHO05D008847 3.9e-57 225.7 297 47.8
ECA246G5308 Erigeron canadensis HOM05D007016 ORTHO05D008847 5.1e-57 225.3 204 55.9
TWI15G0571 Tripterygium wilfordii HOM05D007016 ORTHO05D008847 5.1e-57 225.3 219 53.9
VMungo1215G3083 Vigna mungo HOM05D007016 ORTHO05D008847 7.3e-56 221.5 209 54.5
Lsat_1_v5_gn_3_13941 Lactuca sativa HOM05D007016 ORTHO05D008847 9.6e-56 221.1 257 48.6
TWI81G0911 Tripterygium wilfordii HOM05D007016 ORTHO05D008847 9.6e-56 221.1 217 52.1
MBI04_g33411_MAGBIO Magnolia biondii HOM05D007016 ORTHO05D008847 2.8e-55 219.5 212 53.8
Ca_24467_v3 Cicer arietinum L. HOM05D007016 ORTHO05D008847 1.8e-54 216.9 207 56.5
Glyma.01G230300 Glycine max HOM05D007016 ORTHO05D008847 1.8e-54 216.9 211 54.5
Manes.02G003500 Manihot esculenta HOM05D007016 ORTHO05D008847 2.4e-54 216.5 238 52.1
PGSC0003DMG400012122 Solanum tuberosum HOM05D007016 ORTHO05D008847 3.1e-54 216.1 246 52.0
Sc01g0010620 Simmondsia chinensis HOM05D007016 ORTHO05D008847 4.0e-54 215.7 264 48.9
Phvul.002G036800 Phaseolus vulgaris HOM05D007016 ORTHO05D008847 5.3e-54 215.3 213 52.1
RcHm_v2.0_Chr7g0186811 Rosa chinensis HOM05D007016 ORTHO05D008847 5.3e-54 215.3 249 49.0
Ciclev10021806m.g Citrus clementina HOM05D007016 ORTHO05D008847 9.0e-54 214.5 268 47.4
Aqoxy5G04260 Aquilegia oxysepala HOM05D007016 ORTHO05D008847 1.5e-53 213.8 249 49.4
DCAR_006538 Daucus carota HOM05D007016 ORTHO05D008847 2.6e-53 213.0 196 58.2
QL02p028324 Quercus lobata HOM05D007016 ORTHO05D008847 9.9e-53 211.1 220 51.8
FAN18G1330 Fragaria x ananassa HOM05D007016 ORTHO05D008847 1.3e-52 210.7 291 44.7
CsaV3_5G001730 Cucumis sativus L. HOM05D007016 ORTHO05D008847 1.7e-52 210.3 255 48.2
Potri.001G084600 Populus trichocarpa HOM05D007016 ORTHO05D008847 2.2e-52 209.9 193 56.5
Sed0027229 Sechium edule HOM05D007016 ORTHO05D008847 6.4e-52 208.4 255 47.8
CAN.G567.80 Capsicum annuum HOM05D007016 ORTHO05D008847 8.4e-52 208.0 203 59.1
ClCG01G001570 Citrullus lanatus HOM05D007016 ORTHO05D008847 8.4e-52 208.0 258 47.7
Solyc08g083030.4 Solanum lycopersicum HOM05D007016 ORTHO05D008847 1.4e-51 207.2 246 50.8
Sopen08g031240 Solanum pennellii HOM05D007016 ORTHO05D008847 1.4e-51 207.2 246 50.8
Medtr5g008220 Medicago truncatula HOM05D007016 ORTHO05D008847 4.2e-51 205.7 211 53.1
MELO3C005780.2 Cucumis melo HOM05D007016 ORTHO05D008847 5.4e-51 205.3 152 64.5
ATR0620G109 Amborella trichopoda HOM05D007016 ORTHO05D008847 7.1e-51 204.9 217 52.1
Gohir.A02G097900 Gossypium hirsutum HOM05D007016 ORTHO05D008847 1.2e-50 204.1 207 51.7
AUR62007045 Chenopodium quinoa HOM05D007016 ORTHO05D008847 1.6e-50 203.8 261 46.0
LjContig00222g0018079 Lotus japonicus HOM05D007016 ORTHO05D008847 3.5e-50 202.6 246 48.8
Nn3g18888 Nelumbo nucifera HOM05D007016 ORTHO05D008847 4.6e-50 202.2 290 44.1
Atru.chr9.1899 Acer truncatum HOM05D007016 ORTHO05D008847 1.7e-49 200.3 210 52.9
EL10Ac5g12439 Beta vulgaris HOM05D007016 ORTHO05D008847 2.3e-49 199.9 260 48.8
MSTRG.15575 Avicennia marina HOM05D007016 ORTHO05D008847 3.9e-49 199.1 254 47.2
Haze_09158 Corylus avellana HOM05D007016 ORTHO05D008847 1.1e-48 197.6 215 51.6
FAN13G1076 Fragaria x ananassa HOM05D007016 ORTHO05D008847 1.5e-48 197.2 195 55.9
Gohir.D03G085700 Gossypium hirsutum HOM05D007016 ORTHO05D008847 1.9e-48 196.8 209 50.2
HPP92_022341 Vanilla planifolia HOM05D007016 ORTHO05D008847 4.3e-48 195.7 193 52.8
Thhalv10027936m.g Eutrema salsugineum HOM05D007016 ORTHO05D008847 7.3e-48 194.9 163 59.5
HPP92_022355 Vanilla planifolia HOM05D007016 ORTHO05D008847 9.6e-48 194.5 193 52.8
Lsat_1_v5_gn_3_14061 Lactuca sativa HOM05D007016 ORTHO05D008847 1.6e-47 193.7 194 49.0
Haze_09164 Corylus avellana HOM05D007016 ORTHO05D008847 2.1e-47 193.4 215 50.2
Ah.07g197890 Amaranthus hybridus HOM05D007016 ORTHO05D008847 2.8e-47 193.0 242 50.0
A07p21030 Brassica napus HOM05D003273 ORTHO05D004023 6.2e-47 191.8 140 64.3
Carub.0007s3342 Capsella rubella HOM05D007016 ORTHO05D008847 6.2e-47 191.8 167 58.1
BraA07t29790Z Brassica rapa HOM05D003273 ORTHO05D004023 1.1e-46 191.0 196 52.6
BcaC02g08900 Brassica carinata HOM05D003273 ORTHO05D004023 2.4e-46 189.9 142 62.7
BcaB06g27684 Brassica carinata HOM05D003273 ORTHO05D004023 3.1e-46 189.5 149 62.4
CARHR212600 Cardamine hirsuta HOM05D007016 ORTHO05D008847 4.0e-46 189.1 172 56.4
THA.LOC104809306 Tarenaya hassleriana HOM05D007016 ORTHO05D008847 4.0e-46 189.1 171 56.1
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 6.9e-46 188.3 187 55.1
AT5G41960 Arabidopsis thaliana HOM05D007016 ORTHO05D008847 9.0e-46 188.0 144 63.9
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 1.2e-45 187.6 142 62.0
BolC4t26521H Brassica oleracea HOM05D003273 ORTHO05D004023 1.2e-45 187.6 142 62.0
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 1.2e-45 187.6 187 55.1
Cpa.g.sc175.19 Carica papaya HOM05D007016 ORTHO05D008847 1.2e-45 187.6 186 54.8
HanXRQChr17g0534751 Helianthus annuus HOM05D007016 ORTHO05D008847 1.2e-45 187.6 193 49.7
SEGI_36842 Sequoiadendron giganteum HOM05D007016 ORTHO05D008847 2.0e-45 186.8 135 63.0
unitig_62.g23644 Utricularia gibba HOM05D007016 ORTHO05D008847 1.1e-43 181.0 190 50.5
Aa31LG9G230 Aethionema arabicum HOM05D007016 ORTHO05D008847 1.4e-43 180.6 199 50.8
AL7G47260 Arabidopsis lyrata HOM05D007016 ORTHO05D008847 2.4e-43 179.9 207 49.3
Sp7g00170 Schrenkiella parvula HOM05D007016 ORTHO05D008847 2.4e-43 179.9 189 51.9
Zm00001eb428160 Zea mays HOM05D007016 ORTHO05D008847 3.2e-43 179.5 196 49.0
BcaC08g44572 Brassica carinata HOM05D003273 ORTHO05D004023 7.1e-43 178.3 126 68.3
Os04g0585600 Oryza sativa ssp. japonica HOM05D007016 ORTHO05D008847 7.1e-43 178.3 170 50.6
Lalb_Chr09g0320381 Lupinus albus HOM05D007016 ORTHO05D008847 1.2e-42 177.6 228 45.2
TPR.G38026 Trifolium pratense HOM05D007016 ORTHO05D008847 1.0e-41 174.5 182 53.3
C06p20380 Brassica napus HOM05D003273 ORTHO05D004023 3.0e-41 172.9 129 65.1
AUR62019909 Chenopodium quinoa HOM05D007016 ORTHO05D008847 2.9e-36 156.4 259 40.5
Nitab4.5_0000051g0070 Nicotiana tabacum HOM05D007016 ORTHO05D008847 8.4e-36 154.8 203 46.8
MD16G1274000 Malus domestica HOM05D007016 ORTHO05D008847 5.5e-35 152.1 161 50.9
CSS0028177 Camellia sinensis var. sinensis HOM05D007016 ORTHO05D008847 1.2e-34 151.0 250 42.0
Pp3c14_22240 Physcomitrium patens HOM05D007016 ORTHO05D008847 1.6e-34 150.6 119 58.0
Mapoly0080s0071 Marchantia polymorpha HOM05D007016 ORTHO05D008847 2.1e-34 150.2 128 51.6
AagrBONN_evm.TU.Sc2ySwM_117.1459 Anthoceros agrestis HOM05D007016 ORTHO05D008847 2.5e-32 143.3 139 50.4
SMO164G0130 Selaginella moellendorffii HOM05D007016 ORTHO05D008847 4.8e-31 139.0 123 51.2
BolC6t37216H Brassica oleracea HOM05D007016 ORTHO05D008847 3.1e-30 136.3 152 48.7
Psat2g187480 Pisum sativum HOM05D007016 ORTHO05D008847 7.6e-29 131.7 145 49.0
arahy.Tifrunner.gnm1.ann1.PIY4C5 Arachis hypogaea HOM05D007016 ORTHO05D008847 1.3e-28 131.0 86 68.6
CBR_g26222 Chara braunii HOM05D007016 ORTHO05D008847 2.7e-26 123.2 145 45.5
CDE07G1000 Ceratophyllum demersum HOM05D007016 ORTHO05D008847 1.3e-25 120.9 144 46.5
SEGI_07436 Sequoiadendron giganteum HOM05D007016 ORTHO05D008847 5.7e-24 115.5 82 64.6
CANSAT21G1603 Cannabis sativa HOM05D007016 ORTHO05D008847 4.5e-21 105.9 228 35.1
arahy.Tifrunner.gnm1.ann1.HM96ZH Arachis hypogaea HOM05D007016 ORTHO05D008847 6.3e-15 85.5 118 45.8
Hund14199 Selenicereus undatus HOM05D007016 ORTHO05D008847 1.4e-14 84.3 108 47.2
Nitab4.5_0002582g0050 Nicotiana tabacum HOM05D007016 ORTHO05D008847 8.2e-07 58.5 46 63.0


User provided reference genes

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