Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g16680 Coffea canephora HOM05D006904 ORTHO05D008439 2.3e-172 609.0 343 100.0
CAN.G567.78 Capsicum annuum HOM05D006904 ORTHO05D008439 3.3e-83 312.8 271 65.3
Nitab4.5_0004251g0070 Nicotiana tabacum HOM05D006904 ORTHO05D008439 4.4e-83 312.4 284 61.3
Sopen08g031220 Solanum pennellii HOM05D006904 ORTHO05D008439 2.6e-80 303.1 268 64.2
Solyc08g083010.3 Solanum lycopersicum HOM05D006904 ORTHO05D008439 7.7e-80 301.6 268 63.8
PGSC0003DMG400012243 Solanum tuberosum HOM05D006904 ORTHO05D008439 7.7e-80 301.6 258 65.9
TAR629G0561 Trochodendron aralioides HOM05D006904 ORTHO05D008439 2.9e-79 299.7 307 59.6
MSTRG.24864 Avicennia marina HOM05D006904 ORTHO05D008439 3.6e-77 292.7 332 53.6
Dinv02287 Davidia involucrata HOM05D006904 ORTHO05D008439 3.6e-77 292.7 331 58.6
QL02p029228 Quercus lobata HOM05D006904 ORTHO05D008439 6.1e-77 292.0 324 56.8
Lj8A201G80 Lonicera japonica HOM05D006904 ORTHO05D008439 8.0e-77 291.6 248 62.9
Potri.001G084500 Populus trichocarpa HOM05D006904 ORTHO05D008439 1.5e-75 287.3 297 54.9
Oeu010740.1 Olea europaea HOM05D006904 ORTHO05D008439 5.7e-75 285.4 248 62.5
CSS0028351 Camellia sinensis var. sinensis HOM05D006904 ORTHO05D008439 1.3e-74 284.3 332 54.8
Nitab4.5_0007063g0060 Nicotiana tabacum HOM05D006904 ORTHO05D008439 2.2e-74 283.5 287 58.5
vmacro11509 Vaccinium macrocarpon HOM05D006904 ORTHO05D008439 2.2e-74 283.5 272 57.7
Rhsim02G0251400 Rhododendron simsii HOM05D006904 ORTHO05D008439 3.1e-73 279.6 285 56.8
Haze_09157 Corylus avellana HOM05D006904 ORTHO05D008439 1.2e-72 277.7 326 50.3
Peaxi162Scf00074g00356 Petunia axillaris HOM05D006904 ORTHO05D008439 1.2e-72 277.7 257 60.3
Cfa011933 Carpinus fangiana HOM05D006904 ORTHO05D008439 2.7e-72 276.6 324 50.0
Haze_09163 Corylus avellana HOM05D006904 ORTHO05D008439 5.9e-72 275.4 326 50.6
Thecc.03G222200 Theobroma cacao HOM05D006904 ORTHO05D008439 7.7e-72 275.0 296 53.4
Migut.A01096 Erythranthe guttata HOM05D006904 ORTHO05D008439 1.3e-71 274.2 278 55.8
COL.COLO4_10787 Corchorus olitorius HOM05D006904 ORTHO05D008439 2.2e-71 273.5 272 54.0
Actinidia04169 Actinidia chinensis HOM05D006904 ORTHO05D008439 2.9e-71 273.1 286 54.2
Aqoxy5G04256 Aquilegia oxysepala HOM05D006904 ORTHO05D008439 3.8e-71 272.7 274 56.2
RcHm_v2.0_Chr7g0186801 Rosa chinensis HOM05D006904 ORTHO05D008439 3.8e-71 272.7 277 56.0
Gohir.D12G240700 Gossypium hirsutum HOM05D006904 ORTHO05D008439 1.1e-70 271.2 309 49.8
Gorai.008G257800 Gossypium raimondii HOM05D006904 ORTHO05D008439 1.1e-70 271.2 309 49.8
Prupe.5G128700 Prunus persica HOM05D006904 ORTHO05D008439 1.1e-70 271.2 277 60.3
MD14G1125000 Malus domestica HOM05D006904 ORTHO05D008439 1.5e-70 270.8 276 54.3
PSO675G2501 Papaver somniferum HOM05D006904 ORTHO05D008439 1.9e-70 270.4 269 56.9
HanXRQChr07g0192161 Helianthus annuus HOM05D006904 ORTHO05D008439 4.2e-70 269.2 342 46.2
Hma1.2p1_0456F.1_g156570 Hydrangea macrophylla HOM05D006904 ORTHO05D008439 4.2e-70 269.2 252 63.5
Ciclev10021179m.g Citrus clementina HOM05D006904 ORTHO05D008439 5.5e-70 268.9 276 52.9
FAN04G1837 Fragaria x ananassa HOM05D006904 ORTHO05D008439 7.2e-70 268.5 289 56.4
arahy.Tifrunner.gnm1.ann1.U3Q9D7 Arachis hypogaea HOM05D006904 ORTHO05D008439 1.2e-69 267.7 267 55.8
PSO541G0496 Papaver somniferum HOM05D006904 ORTHO05D008439 2.1e-69 266.9 268 57.5
Gohir.A12G239500 Gossypium hirsutum HOM05D006904 ORTHO05D008439 3.6e-69 266.2 309 49.2
GSVIVG01019640001 Vitis vinifera HOM05D006904 ORTHO05D008439 6.1e-69 265.4 295 56.6
ECA233G3570 Erigeron canadensis HOM05D006904 ORTHO05D008439 1.4e-68 264.2 251 57.4
FAN18G2239 Fragaria x ananassa HOM05D006904 ORTHO05D008439 4.0e-68 262.7 287 55.4
FvH4_5g11010 Fragaria vesca HOM05D006904 ORTHO05D008439 5.2e-68 262.3 287 55.1
MD06G1117600 Malus domestica HOM05D006904 ORTHO05D008439 6.8e-68 261.9 333 46.2
Sabra01G0061300 Salix brachista HOM05D006904 ORTHO05D008439 6.8e-68 261.9 318 49.1
TWI81G0826 Tripterygium wilfordii HOM05D006904 ORTHO05D008439 8.8e-68 261.5 316 49.4
arahy.Tifrunner.gnm1.ann1.NJ37M5 Arachis hypogaea HOM05D006904 ORTHO05D008439 2.0e-67 260.4 283 53.7
MBI04_g44912_MAGBIO Magnolia biondii HOM05D006904 ORTHO05D008439 2.0e-67 260.4 288 52.4
Medtr3g005290 Medicago truncatula HOM05D006904 ORTHO05D008439 2.0e-67 260.4 267 54.3
Glyma.09G286200 Glycine max HOM05D006904 ORTHO05D008439 4.4e-67 259.2 268 54.1
Sc01g0010610 Simmondsia chinensis HOM05D006904 ORTHO05D008439 4.4e-67 259.2 317 50.5
CiPaw.12G078200 Carya illinoinensis HOM05D006904 ORTHO05D008439 9.8e-67 258.1 292 57.5
ClCG10G000840 Citrullus lanatus HOM05D006904 ORTHO05D008439 9.8e-67 258.1 274 58.4
FAN13G1638 Fragaria x ananassa HOM05D006904 ORTHO05D008439 1.7e-66 257.3 281 54.8
Lj2g0027548 Lotus japonicus HOM05D006904 ORTHO05D008439 1.7e-66 257.3 271 51.7
Eucgr.E01035 Eucalyptus grandis HOM05D006904 ORTHO05D008439 6.3e-66 255.4 298 54.0
Atru.chr9.1900 Acer truncatum HOM05D006904 ORTHO05D008439 1.2e-64 251.1 240 57.9
THA.LOC104813055 Tarenaya hassleriana HOM05D006904 ORTHO05D008439 2.0e-64 250.4 268 53.4
Lsat_1_v5_gn_6_9180 Lactuca sativa HOM05D000482 ORTHO05D000349 5.9e-64 248.8 280 51.1
AL7G29200 Arabidopsis lyrata HOM05D006904 ORTHO05D008439 1.7e-63 247.3 281 52.3
Thhalv10025762m.g Eutrema salsugineum HOM05D006904 ORTHO05D008439 2.3e-63 246.9 306 49.0
Ah.12g053150 Amaranthus hybridus HOM05D006904 ORTHO05D008439 2.9e-63 246.5 267 54.3
EL10Ac5g12440 Beta vulgaris HOM05D006904 ORTHO05D008439 1.1e-62 244.6 307 47.2
MBI04_g21743_MAGBIO Magnolia biondii HOM05D006904 ORTHO05D008439 1.1e-62 244.6 249 54.6
Phvul.002G333700 Phaseolus vulgaris HOM05D006904 ORTHO05D008439 3.3e-62 243.0 266 50.4
Psat1g000400 Pisum sativum HOM05D006904 ORTHO05D008439 4.2e-62 242.7 281 50.5
SGA_v2.0_scaffold104G30265 Striga asiatica HOM05D006904 ORTHO05D008439 4.2e-62 242.7 264 56.1
BcaNung01113 Brassica carinata HOM05D006904 ORTHO05D008439 1.2e-61 241.1 299 48.5
Ca_13963_v3 Cicer arietinum L. HOM05D006904 ORTHO05D008439 2.8e-61 240.0 267 51.3
VMungo1309G0432 Vigna mungo HOM05D006904 ORTHO05D008439 2.8e-61 240.0 260 51.5
A01p15360 Brassica napus HOM05D000458 ORTHO05D000951 3.6e-61 239.6 313 47.3
AT4G24090 Arabidopsis thaliana HOM05D006904 ORTHO05D008439 4.7e-61 239.2 264 51.9
BraA01t01480Z Brassica rapa HOM05D006904 ORTHO05D008439 1.4e-60 237.7 313 47.0
BcaC09g50912 Brassica carinata HOM05D006904 ORTHO05D008439 2.3e-60 236.9 313 47.0
C01p19310 Brassica napus HOM05D000458 ORTHO05D000951 2.3e-60 236.9 313 47.0
BolC1t01857H Brassica oleracea HOM05D000458 ORTHO05D000951 2.3e-60 236.9 313 47.0
Carub.0007s1701 Capsella rubella HOM05D006904 ORTHO05D008439 2.3e-60 236.9 268 50.4
DCAR_006536 Daucus carota HOM05D006904 ORTHO05D008439 3.0e-60 236.5 244 57.0
AUR62007044 Chenopodium quinoa HOM05D006904 ORTHO05D008439 1.2e-59 234.6 277 50.5
Duzib205G0314 Durio zibethinus HOM05D006904 ORTHO05D008439 1.5e-59 234.2 312 46.8
CANSAT21G0222 Cannabis sativa HOM05D006904 ORTHO05D008439 3.4e-59 233.0 290 53.8
Aa31LG6G7300 Aethionema arabicum HOM05D006904 ORTHO05D008439 1.3e-58 231.1 264 51.9
Sp7g22050 Schrenkiella parvula HOM05D006904 ORTHO05D008439 4.9e-58 229.2 285 48.1
CsaV3_3G000910 Cucumis sativus L. HOM05D006904 ORTHO05D008439 1.2e-56 224.6 274 54.7
MELO3C013778.2 Cucumis melo HOM05D006904 ORTHO05D008439 2.0e-56 223.8 274 54.4
Hund11354 Selenicereus undatus HOM05D006904 ORTHO05D008439 2.7e-56 223.4 264 50.4
TPR.G25509 Trifolium pratense HOM05D006904 ORTHO05D008439 4.5e-56 222.6 251 51.0
CDE09G0165 Ceratophyllum demersum HOM05D006904 ORTHO05D008439 1.6e-53 214.2 258 51.6
PGR042G3610 Punica granatum HOM05D006904 ORTHO05D008439 6.1e-53 212.2 282 52.1
SalBow8G2695 Salvia bowleyana HOM05D006904 ORTHO05D008439 6.8e-52 208.8 267 52.8
CDE11G0025 Ceratophyllum demersum HOM05D006904 ORTHO05D008439 5.8e-51 205.7 257 47.9
Haze_16434 Corylus avellana HOM05D006904 ORTHO05D008439 9.8e-51 204.9 263 47.5
Manes.02G003600 Manihot esculenta HOM05D006904 ORTHO05D008439 2.2e-50 203.8 251 55.0
ATR0620G017 Amborella trichopoda HOM05D006904 ORTHO05D008439 5.4e-49 199.1 276 44.2
AUR62019908 Chenopodium quinoa HOM05D006904 ORTHO05D008439 5.4e-49 199.1 319 45.1
Sed0025618 Sechium edule HOM05D006904 ORTHO05D008439 1.6e-48 197.6 234 52.6
Haze_14079 Corylus avellana HOM05D006904 ORTHO05D008439 8.6e-47 191.8 229 50.2
unitig_88.g27646 Utricularia gibba HOM05D006904 ORTHO05D008439 4.7e-45 186.0 249 49.0
HPP92_025869 Vanilla planifolia HOM05D006904 ORTHO05D008439 7.1e-41 172.2 260 45.0
ECA246G4131 Erigeron canadensis HOM05D006904 ORTHO05D008439 7.8e-40 168.7 242 44.2
CARHR231490 Cardamine hirsuta HOM05D006904 ORTHO05D008439 3.9e-39 166.4 166 55.4
Zm00001eb319140 Zea mays HOM05D006904 ORTHO05D008439 1.1e-36 158.3 243 46.9
Os09g0529350 Oryza sativa ssp. japonica HOM05D006904 ORTHO05D008439 3.4e-35 153.3 165 50.9
SEGI_29366 Sequoiadendron giganteum HOM05D006904 ORTHO05D008439 7.6e-35 152.1 242 39.3
HanXRQChr06g0166841 Helianthus annuus HOM05D006904 ORTHO05D008439 6.4e-34 149.1 147 54.4
Cpa.g.sc175.18 Carica papaya HOM05D006904 ORTHO05D008439 1.1e-33 148.3 163 55.2
Lsat_1_v5_gn_3_13720 Lactuca sativa HOM05D006904 ORTHO05D008439 2.4e-33 147.1 238 40.8
Aqoxy5G04252 Aquilegia oxysepala HOM05D006904 ORTHO05D008439 3.6e-29 133.3 157 51.6
Nn5g30646 Nelumbo nucifera HOM05D006904 ORTHO05D008439 3.8e-26 123.2 116 57.8
Pp3c9_20020 Physcomitrium patens HOM05D006904 ORTHO05D008439 6.4e-26 122.5 265 34.7
SMO361G0353 Selaginella moellendorffii HOM05D006904 ORTHO05D008439 8.4e-18 95.5 138 40.6
AagrBONN_evm.TU.Sc2ySwM_228.3172 Anthoceros agrestis HOM05D006904 ORTHO05D008439 1.9e-17 94.4 323 28.2
Mapoly0033s0090 Marchantia polymorpha HOM05D006904 ORTHO05D008439 2.4e-17 94.0 277 29.2
CBR_g70738 Chara braunii HOM05D006904 ORTHO05D008439 2.1e-16 90.9 313 26.2
BcaC09g50913 Brassica carinata HOM05D006904 ORTHO05D008439 8.7e-15 85.5 130 44.6
QL02p029244 Quercus lobata HOM05D006904 ORTHO05D008439 2.1e-13 80.9 120 45.8
MCO05G331 Micromonas commoda HOM05D006904 ORTHO05D008439 1.1e-12 78.6 167 34.7
Cre02.g144850 Chlamydomonas reinhardtii HOM05D006904 ORTHO05D008439 1.9e-09 67.8 260 30.0
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 1.0e-07 62.0 58 53.4
Aa31LG6G7320 Aethionema arabicum HOM05D003846 ORTHO05D004726 5.6e-06 56.2 196 31.1


User provided reference genes

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