Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 2.3e-290 1001.5 505 100.0
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 2.0e-230 802.4 506 77.9
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 5.0e-229 797.7 506 77.5
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 1.1e-226 790.0 512 75.4
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 5.1e-221 771.2 505 75.8
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 5.1e-221 771.2 506 75.7
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 2.1e-219 765.8 519 73.8
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 8.1e-219 763.8 505 74.3
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 4.0e-218 761.5 505 73.9
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 3.4e-217 758.4 512 73.8
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 1.6e-214 749.6 508 73.8
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 4.6e-214 748.0 510 73.5
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 1.6e-211 739.6 515 72.4
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 1.4e-210 736.5 508 71.7
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 1.2e-209 733.4 508 72.2
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 7.6e-209 730.7 511 70.1
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 2.2e-208 729.2 505 72.3
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 1.1e-207 726.9 506 70.8
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 2.4e-207 725.7 506 70.6
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 7.1e-207 724.2 496 72.2
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 1.2e-206 723.4 495 72.5
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 1.2e-206 723.4 517 69.4
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 1.6e-206 723.0 506 70.4
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 3.5e-206 721.8 511 71.4
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 6.0e-206 721.1 517 70.2
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 1.3e-205 719.9 493 72.2
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 1.7e-205 719.5 510 70.2
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 2.3e-205 719.2 506 70.0
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 3.0e-205 718.8 506 70.0
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 5.1e-205 718.0 502 71.1
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 6.6e-205 717.6 508 69.9
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 8.7e-205 717.2 509 69.2
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 5.6e-204 714.5 509 70.9
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 2.1e-203 712.6 510 69.0
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 2.8e-203 712.2 508 69.1
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 2.8e-203 712.2 495 71.5
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 4.8e-203 711.4 510 70.2
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 1.8e-202 709.5 508 68.9
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 9.0e-202 707.2 487 71.5
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 1.3e-200 703.4 505 69.5
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 1.7e-200 703.0 505 69.9
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 1.7e-200 703.0 511 67.7
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 4.9e-200 701.4 519 69.7
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 4.9e-200 701.4 508 68.9
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.4e-199 699.9 500 70.6
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.9e-199 699.5 507 66.7
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 1.9e-199 699.5 511 67.7
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 2.4e-199 699.1 500 70.4
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 4.2e-199 698.4 500 70.4
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 4.2e-199 698.4 498 70.9
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 7.1e-199 697.6 516 70.2
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 3.5e-198 695.3 565 63.4
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 6.0e-198 694.5 500 69.6
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 3.0e-197 692.2 540 65.2
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 3.0e-197 692.2 527 65.8
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 5.1e-197 691.4 508 65.7
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.5e-196 689.9 500 69.8
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 4.0e-194 681.8 506 68.4
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 5.3e-194 681.4 535 63.6
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 9.0e-194 680.6 499 68.9
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 1.7e-192 676.4 516 67.6
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 6.2e-187 657.9 584 59.6
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 3.1e-186 655.6 506 66.0
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 6.9e-186 654.4 519 64.0
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 4.5e-185 651.7 498 65.7
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 1.7e-184 649.8 507 64.9
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 2.9e-184 649.0 562 61.7
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 2.1e-182 642.9 519 62.4
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 1.3e-181 640.2 390 79.5
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 6.7e-181 637.9 522 61.7
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 3.7e-179 632.1 503 62.6
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 2.4e-178 629.4 505 62.6
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 7.6e-177 624.4 471 67.3
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 1.0e-176 624.0 519 60.1
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 7.2e-175 617.8 564 57.4
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 9.3e-175 617.5 512 60.4
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 1.2e-174 617.1 519 61.1
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 2.7e-174 615.9 525 59.6
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 1.0e-173 614.0 534 60.3
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 1.9e-172 609.8 465 66.2
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 1.9e-172 609.8 518 59.3
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 1.9e-172 609.8 518 59.3
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 1.9e-172 609.8 518 59.3
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 7.4e-172 607.8 518 59.3
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 2.8e-171 605.9 518 59.1
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 4.8e-171 605.1 494 62.3
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 5.3e-170 601.7 460 66.3
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 2.9e-168 595.9 363 80.2
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 2.0e-156 556.6 391 71.1
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 3.7e-155 552.4 354 76.8
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 1.5e-135 487.3 509 53.8
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 1.9e-135 486.9 570 50.0
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 2.5e-135 486.5 466 59.7
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 5.2e-117 425.6 492 51.4
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 2.4e-114 416.8 264 78.0
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 5.4e-114 415.6 518 46.1
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 5.2e-109 399.1 516 44.4
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 2.7e-105 386.7 255 74.1
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 6.0e-105 385.6 507 42.2
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 3.5e-97 359.8 255 69.8
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 5.1e-96 355.9 261 69.0
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 2.1e-86 323.9 551 35.6
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 5.8e-76 289.3 203 67.5
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 3.8e-75 286.6 204 70.1
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 3.2e-74 283.5 235 61.3
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 1.2e-73 281.6 456 39.9
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 5.6e-71 272.7 210 67.6
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 8.4e-67 258.8 258 46.1
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 4.6e-65 253.1 239 54.8
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 5.0e-59 233.0 221 55.7
AagrBONN_evm.TU.Sc2ySwM_228.3279 Anthoceros agrestis HOM05D005847 ORTHO05D007143 7.2e-58 229.2 247 47.4
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 8.2e-54 215.7 173 65.3
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 2.1e-49 201.1 464 29.3
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 1.8e-45 188.0 146 63.7
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 7.2e-42 176.0 248 44.8
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 2.1e-41 174.5 181 50.3
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 7.9e-41 172.6 506 29.4
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 1.5e-34 151.8 258 38.8
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 1.5e-31 141.7 506 27.3
AUR62019891 Chenopodium quinoa HOM05D005847 ORTHO05D007143 1.3e-30 138.7 111 61.3
Cpa.g.sc15.22 Carica papaya HOM05D005847 ORTHO05D007143 1.4e-29 135.2 82 76.8
Atru.chr1.1468 Acer truncatum HOM05D005847 ORTHO05D007143 5.0e-27 126.7 104 58.7
Nn1g00325 Nelumbo nucifera HOM05D005847 ORTHO05D007143 9.4e-26 122.5 96 70.8
Cre05.g237600 Chlamydomonas reinhardtii HOM05D005847 ORTHO05D007143 1.2e-25 122.1 170 40.6
Os10g0520950 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 4.8e-22 110.2 121 51.2
QL02p028460 Quercus lobata HOM05D005847 ORTHO05D007143 5.9e-20 103.2 127 45.7
Lj3g0011757 Lotus japonicus HOM05D005847 ORTHO05D007143 8.6e-19 99.4 177 40.1
Medtr8g040720 Medicago truncatula HOM05D005847 ORTHO05D007143 2.4e-13 81.3 52 61.5
Nitab4.5_0000109g0320 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.0e-08 65.9 43 69.8
Sabra03G0104700 Salix brachista HOM05D005847 ORTHO05D007143 2.9e-06 57.8 115 36.5


User provided reference genes

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