Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1490.3 726 100.0
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1403.7 732 93.6
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 0.0e+00 1358.2 730 89.3
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1355.1 729 88.6
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 0.0e+00 1354.7 731 88.0
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 0.0e+00 1347.4 732 88.0
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1347.0 732 88.4
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 0.0e+00 1347.0 732 88.0
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1345.1 732 88.3
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 0.0e+00 1339.7 732 87.3
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1335.9 732 87.7
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1334.7 724 88.5
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 0.0e+00 1331.6 728 87.5
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1331.2 731 86.6
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1330.5 731 86.5
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 0.0e+00 1325.5 732 86.7
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 0.0e+00 1323.5 731 86.3
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 0.0e+00 1321.6 734 85.6
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 0.0e+00 1320.4 733 85.5
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 0.0e+00 1319.7 731 86.5
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1318.9 726 86.9
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 0.0e+00 1318.1 734 86.4
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 0.0e+00 1317.8 733 85.5
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 0.0e+00 1316.6 738 85.6
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1315.1 728 85.7
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 0.0e+00 1312.4 730 84.8
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1310.0 732 84.8
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1310.0 735 84.4
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 0.0e+00 1310.0 734 84.7
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1308.1 732 84.8
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 0.0e+00 1307.4 697 89.0
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 0.0e+00 1307.0 731 84.8
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1307.0 734 84.9
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1306.6 730 84.7
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 0.0e+00 1306.2 734 84.9
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 0.0e+00 1305.4 728 84.8
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1305.0 730 84.8
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1304.3 728 84.6
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1304.3 728 84.6
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1303.9 730 84.7
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1303.5 782 81.8
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 0.0e+00 1303.1 731 84.7
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1302.7 727 86.0
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1302.3 734 84.6
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 0.0e+00 1302.0 727 85.6
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 0.0e+00 1301.6 732 85.1
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 0.0e+00 1301.2 733 83.5
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1300.4 726 85.5
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1300.4 774 81.3
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 0.0e+00 1297.0 726 84.6
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 0.0e+00 1296.2 726 84.7
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1295.8 774 81.0
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 0.0e+00 1295.4 726 85.0
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 0.0e+00 1295.4 733 84.0
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 0.0e+00 1293.9 727 85.4
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 0.0e+00 1292.3 726 85.1
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 0.0e+00 1291.6 733 84.0
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 0.0e+00 1284.2 749 83.0
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1282.3 779 79.5
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1282.3 779 79.5
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 0.0e+00 1281.9 726 83.1
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 0.0e+00 1278.8 726 83.9
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 0.0e+00 1278.1 727 84.2
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 0.0e+00 1276.9 726 82.8
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 0.0e+00 1275.4 726 82.8
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1274.2 729 82.9
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1273.1 729 82.7
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 0.0e+00 1272.7 726 82.9
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 0.0e+00 1272.7 726 82.8
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 0.0e+00 1271.9 733 83.1
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 0.0e+00 1271.1 727 82.4
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1269.6 733 82.9
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 0.0e+00 1269.2 732 84.8
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1268.8 726 82.8
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 0.0e+00 1268.4 733 82.1
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1266.9 727 82.8
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1266.9 728 82.4
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1265.4 733 82.5
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 0.0e+00 1264.2 732 82.7
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 0.0e+00 1264.2 734 81.9
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1263.1 726 82.5
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1263.1 728 82.3
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 0.0e+00 1263.1 730 84.1
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1262.3 728 82.4
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1262.3 732 81.8
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1261.1 726 82.1
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1261.1 732 81.7
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1260.7 733 81.7
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1258.0 732 81.7
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1257.7 732 82.1
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1255.7 733 81.3
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1249.2 725 81.5
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 0.0e+00 1244.6 729 81.8
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 0.0e+00 1241.5 824 74.5
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 0.0e+00 1235.7 726 82.8
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1228.8 706 81.3
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 0.0e+00 1228.8 727 81.6
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1223.8 736 79.2
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1223.4 737 79.9
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1223.0 738 79.8
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1221.8 738 79.5
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1221.8 733 78.9
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 0.0e+00 1220.3 735 80.3
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1218.0 663 87.0
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1217.6 722 79.6
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1213.7 751 77.8
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1208.7 735 79.2
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1176.8 659 84.8
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 0.0e+00 1176.0 661 84.9
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1164.8 695 78.3
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 0.0e+00 1151.3 741 74.5
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 0.0e+00 1148.7 707 76.1
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1144.4 696 77.2
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 0.0e+00 1141.7 733 73.7
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 0.0e+00 1130.9 616 87.3
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 0.0e+00 1127.1 616 87.5
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 0.0e+00 1121.7 734 72.9
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 0.0e+00 1094.7 585 89.1
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 8.3e-310 1066.6 730 72.3
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 8.3e-310 1066.6 733 70.1
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 1.3e-307 1059.3 752 71.1
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 3.3e-306 1054.7 706 72.0
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 1.0e-283 979.9 712 65.3
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.8e-283 979.2 701 69.2
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 9.6e-282 973.4 732 64.6
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 3.7e-281 971.5 739 63.9
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 3.9e-259 898.3 689 62.3
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 7.0e-256 887.5 655 64.9
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 1.0e-254 883.6 505 85.0
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 2.2e-254 882.5 669 63.4
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 6.1e-252 874.4 567 74.4
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 1.1e-248 863.6 697 60.0
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 1.4e-235 820.1 705 57.4
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 1.8e-235 819.7 502 78.7
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 5.6e-229 798.1 784 53.1
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 2.2e-217 759.6 417 85.9
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 6.0e-207 724.9 710 51.8
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.5e-181 639.8 422 72.5
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 1.9e-160 570.5 374 72.7
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 1.3e-153 547.7 303 88.8
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 6.9e-147 525.4 317 79.5
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.0e-145 521.5 357 72.5
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 2.2e-145 520.4 345 75.9
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 2.9e-137 493.4 349 74.5
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.1e-127 460.7 339 68.4
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 4.5e-114 416.4 288 71.5
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 6.6e-113 412.5 314 65.0
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 8.3e-92 342.4 183 81.4
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 7.8e-90 335.9 219 74.0
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 4.7e-79 300.1 389 47.0
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 5.4e-75 286.6 352 48.9
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.7e-73 281.6 168 75.6
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 1.1e-70 272.3 215 64.7
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 3.9e-65 253.8 201 64.7
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 4.3e-64 250.4 215 59.1
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 6.7e-49 199.9 219 45.7
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 1.5e-45 188.7 206 51.9
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 2.0e-45 188.3 201 52.7
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 4.2e-43 180.6 101 75.2
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 7.9e-42 176.4 101 75.2
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 4.8e-31 140.6 80 75.0
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 1.5e-29 135.6 133 52.6
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 1.0e-25 122.9 162 46.3
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 2.0e-24 118.6 135 50.4
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 9.7e-24 116.3 182 37.9
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 2.8e-23 114.8 182 37.9
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 1.6e-21 109.0 63 73.0
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 7.7e-21 106.7 60 81.7
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 2.7e-18 98.2 110 51.8
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 3.6e-18 97.8 130 47.7
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 1.8e-17 95.5 111 46.8
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 4.0e-17 94.4 54 75.9
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 8.2e-15 86.7 68 60.3
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 1.1e-14 86.3 67 61.2
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 2.1e-10 72.0 50 72.0
Atru.chr9.1960 Acer truncatum HOM05D003895 ORTHO05D004723 2.7e-10 71.6 45 77.8
Glyma.17G110701 Glycine max HOM05D003895 ORTHO05D004723 3.4e-08 64.7 34 91.2
PGSC0003DMG400033059 Solanum tuberosum HOM05D003895 ORTHO05D004723 1.3e-07 62.8 41 65.9
Medtr3g108170 Medicago truncatula HOM05D003895 ORTHO05D260611 8.3e-07 60.1 52 59.6
Nitab4.5_0000050g0220 Nicotiana tabacum HOM05D003895 ORTHO05D285100 1.8e-06 58.9 44 72.7


User provided reference genes

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