Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g16390 Coffea canephora HOM05D005777 ORTHO05D006854 1.3e-179 632.9 314 100.0
CSS0003604 Camellia sinensis var. sinensis HOM05D005777 ORTHO05D006854 1.3e-73 280.8 260 56.5
Nitab4.5_0002793g0030 Nicotiana tabacum HOM05D005777 ORTHO05D006854 1.4e-72 277.3 300 51.3
Atru.chr9.1942 Acer truncatum HOM05D005777 ORTHO05D006854 5.1e-70 268.9 290 48.3
Nitab4.5_0002367g0090 Nicotiana tabacum HOM05D005777 ORTHO05D006854 5.1e-70 268.9 295 51.2
Oeu055021.1 Olea europaea HOM05D005777 ORTHO05D006854 5.6e-69 265.4 250 54.8
Peaxi162Scf00074g00526 Petunia axillaris HOM05D005777 ORTHO05D006854 9.6e-69 264.6 293 54.3
Migut.E01651 Erythranthe guttata HOM05D005777 ORTHO05D006854 8.1e-68 261.5 253 54.5
TWI60G0567 Tripterygium wilfordii HOM05D005777 ORTHO05D006854 8.1e-68 261.5 311 48.9
Sopen08g030950 Solanum pennellii HOM05D005777 ORTHO05D006854 1.1e-67 261.2 244 57.0
Lj8C204T6 Lonicera japonica HOM05D005777 ORTHO05D006854 2.4e-67 260.0 255 55.7
Solyc08g082720.4 Solanum lycopersicum HOM05D005777 ORTHO05D006854 5.2e-67 258.8 244 55.3
RcHm_v2.0_Chr7g0186161 Rosa chinensis HOM05D005777 ORTHO05D006854 2.0e-66 256.9 306 49.0
FAN04G0792 Fragaria x ananassa HOM05D005777 ORTHO05D006854 3.4e-66 256.1 269 50.6
Rhsim07G0080700 Rhododendron simsii HOM05D005777 ORTHO05D006854 3.4e-66 256.1 255 51.8
CiPaw.11G117200 Carya illinoinensis HOM05D005777 ORTHO05D006854 1.3e-65 254.2 310 46.8
FvH4_5g11630 Fragaria vesca HOM05D005777 ORTHO05D006854 1.7e-65 253.8 269 50.2
PGSC0003DMG400012134 Solanum tuberosum HOM05D005777 ORTHO05D006854 6.4e-65 251.9 244 55.3
Prupe.5G124500 Prunus persica HOM05D005777 ORTHO05D006854 4.2e-64 249.2 254 53.1
Cpa.g.sc79.3 Carica papaya HOM05D005777 ORTHO05D006854 5.4e-64 248.8 260 50.4
Migut.E00735 Erythranthe guttata HOM05D005777 ORTHO05D006854 5.4e-64 248.8 257 52.1
CAN.G567.32 Capsicum annuum HOM05D005777 ORTHO05D006854 9.3e-64 248.1 288 47.6
FAN13G2465 Fragaria x ananassa HOM05D005777 ORTHO05D006854 7.8e-63 245.0 269 49.1
Sed0007946 Sechium edule HOM05D005777 ORTHO05D006854 3.0e-62 243.0 238 53.4
vmacro13879 Vaccinium macrocarpon HOM05D005777 ORTHO05D006854 6.6e-62 241.9 274 48.2
Lalb_Chr05g0223951 Lupinus albus HOM05D005777 ORTHO05D006854 5.6e-61 238.8 238 53.8
Glyma.08G025000 Glycine max HOM05D005777 ORTHO05D006854 9.6e-61 238.0 245 53.1
Cfa011969 Carpinus fangiana HOM05D005777 ORTHO05D006854 1.3e-60 237.7 305 46.2
Lsat_1_v5_gn_6_83361 Lactuca sativa HOM05D005777 ORTHO05D006854 2.1e-60 236.9 254 50.8
CsaV3_5G001940 Cucumis sativus L. HOM05D005777 ORTHO05D006854 2.8e-60 236.5 311 44.4
Hund14203 Selenicereus undatus HOM05D005777 ORTHO05D006854 3.6e-60 236.1 259 48.6
Sc01g0010430 Simmondsia chinensis HOM05D005777 ORTHO05D006854 6.2e-60 235.3 305 46.9
MELO3C033830.2 Cucumis melo HOM05D005777 ORTHO05D006854 1.8e-59 233.8 244 50.0
Glyma.05G218900 Glycine max HOM05D005777 ORTHO05D006854 6.9e-59 231.9 288 49.0
HanXRQChr03g0083721 Helianthus annuus HOM05D005777 ORTHO05D006854 3.4e-58 229.6 250 49.2
Psat7g024000 Pisum sativum HOM05D005777 ORTHO05D006854 5.8e-58 228.8 250 50.0
EL10Ac5g12951 Beta vulgaris HOM05D005777 ORTHO05D006854 1.7e-57 227.3 271 46.5
Manes.01G049500 Manihot esculenta HOM05D005777 ORTHO05D006854 1.7e-57 227.3 285 47.7
Phvul.002G300700 Phaseolus vulgaris HOM05D005777 ORTHO05D006854 3.8e-57 226.1 288 45.1
ECA240G0322 Erigeron canadensis HOM05D005777 ORTHO05D006854 4.9e-57 225.7 256 48.8
MD06G1111700 Malus domestica HOM05D005777 ORTHO05D006854 6.4e-57 225.3 252 47.6
Lj4g0026879 Lotus japonicus HOM05D005777 ORTHO05D006854 5.4e-56 222.2 292 46.2
Medtr8g099725 Medicago truncatula HOM05D005777 ORTHO05D006854 6.0e-55 218.8 248 50.4
TAR629G1222 Trochodendron aralioides HOM05D005777 ORTHO05D006854 6.0e-55 218.8 290 44.1
Sabra07G0049700 Salix brachista HOM05D005777 ORTHO05D006854 1.0e-54 218.0 249 48.2
Haze_09107 Corylus avellana HOM05D005777 ORTHO05D006854 3.0e-54 216.5 228 51.8
Eucgr.E00956 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.0e-54 216.5 299 39.5
Ah.12g052840 Amaranthus hybridus HOM05D005777 ORTHO05D006854 6.6e-54 215.3 275 44.7
Eucgr.E00744 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.9e-53 213.8 299 39.1
Eucgr.E00747 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.9e-53 213.8 300 39.3
CANSAT21G0853 Cannabis sativa HOM05D005777 ORTHO05D006854 2.5e-53 213.4 261 44.1
QL02p029612 Quercus lobata HOM05D005777 ORTHO05D006854 7.4e-53 211.8 241 47.3
Potri.007G058050 Populus trichocarpa HOM05D005777 ORTHO05D006854 2.1e-52 210.3 297 43.1
Nn1g00296 Nelumbo nucifera HOM05D005777 ORTHO05D006854 4.8e-52 209.1 256 45.7
Aqoxy5G04312 Aquilegia oxysepala HOM05D005777 ORTHO05D006854 9.0e-51 204.9 258 46.5
PGR042G2859 Punica granatum HOM05D005777 ORTHO05D006854 5.5e-48 195.7 295 40.7
FAN18G2480 Fragaria x ananassa HOM05D005777 ORTHO05D006854 9.3e-48 194.9 293 43.0
Actinidia22740 Actinidia chinensis HOM05D005777 ORTHO05D006854 2.1e-47 193.7 262 43.9
MBI07_g24771_MAGBIO Magnolia biondii HOM05D005777 ORTHO05D006854 1.0e-46 191.4 262 41.2
Eucgr.E00762 Eucalyptus grandis HOM05D005777 ORTHO05D006854 6.7e-46 188.7 296 38.5
Duzib116G0305 Durio zibethinus HOM05D005777 ORTHO05D006854 5.6e-45 185.7 290 38.6
Gohir.A02G088000 Gossypium hirsutum HOM05D005777 ORTHO05D006854 7.4e-45 185.3 258 41.1
Gorai.005G117300 Gossypium raimondii HOM05D005777 ORTHO05D006854 1.3e-44 184.5 315 37.5
Dinv37498 Davidia involucrata HOM05D005777 ORTHO05D006854 1.1e-43 181.4 135 65.9
PSO170G4328 Papaver somniferum HOM05D005777 ORTHO05D006854 1.5e-42 177.6 240 44.2
AUR62019875 Chenopodium quinoa HOM05D005777 ORTHO05D006854 1.9e-40 170.6 201 45.3
Eucgr.E00752 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.9e-40 170.6 364 31.9
TPR.G3378 Trifolium pratense HOM05D005777 ORTHO05D006854 9.3e-40 168.3 311 38.3
Thecc.08G166000 Theobroma cacao HOM05D005777 ORTHO05D006854 1.6e-39 167.5 197 45.2
Eucgr.E00939 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.5e-39 166.4 204 43.1
ATR0602G092 Amborella trichopoda HOM05D005777 ORTHO05D006854 6.0e-39 165.6 239 42.7
Ciclev10023944m.g Citrus clementina HOM05D005777 ORTHO05D006854 2.3e-38 163.7 214 42.5
COL.COLO4_25066 Corchorus olitorius HOM05D000316 ORTHO05D006854 9.6e-37 158.3 220 41.8
SGA_v2.0_scaffold74G24601 Striga asiatica HOM05D005777 ORTHO05D006854 9.6e-37 158.3 244 39.3
HPP92_024143 Vanilla planifolia HOM05D005777 ORTHO05D006854 1.3e-36 157.9 270 37.4
Ca_17460_v3 Cicer arietinum L. HOM05D005777 ORTHO05D006854 1.6e-36 157.5 350 33.7
GSVIVG01019597001 Vitis vinifera HOM05D005777 ORTHO05D006854 1.8e-35 154.1 122 60.7
Lsat_1_v5_gn_9_112141 Lactuca sativa HOM05D005777 ORTHO05D006854 1.2e-34 151.4 126 60.3
VMungo0251G0419 Vigna mungo HOM05D003100 ORTHO05D003533 5.5e-32 142.5 271 36.2
FAN08G0729 Fragaria x ananassa HOM05D005777 ORTHO05D006854 9.3e-32 141.7 252 38.9
FAN18G2579 Fragaria x ananassa HOM05D005777 ORTHO05D006854 9.3e-32 141.7 258 38.4
Ciclev10023874m.g Citrus clementina HOM05D005777 ORTHO05D006854 6.7e-30 135.6 157 48.4
DCAR_006511 Daucus carota HOM05D005777 ORTHO05D006854 2.5e-29 133.7 238 37.8
Eucgr.E00969 Eucalyptus grandis HOM05D005777 ORTHO05D006854 5.9e-26 122.5 172 40.1
Eucgr.E00749 Eucalyptus grandis HOM05D005777 ORTHO05D006854 7.7e-26 122.1 162 40.7
Eucgr.E01013 Eucalyptus grandis HOM05D005777 ORTHO05D006854 7.7e-26 122.1 172 39.5
Lsat_1_v5_gn_5_82800 Lactuca sativa HOM05D005777 ORTHO05D006854 7.7e-26 122.1 214 38.8
Eucgr.E00900 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.7e-25 120.9 165 39.4
THA.LOC104813047 Tarenaya hassleriana HOM05D005777 ORTHO05D006854 1.1e-24 118.2 149 45.0
Os09g0363400 Oryza sativa ssp. japonica HOM05D005777 ORTHO05D006854 4.2e-24 116.3 235 31.1
Eucgr.E00895 Eucalyptus grandis HOM05D005777 ORTHO05D006854 9.4e-24 115.2 132 44.7
CDE03G0022 Ceratophyllum demersum HOM05D002476 ORTHO05D002652 1.6e-23 114.4 238 34.5
AUR62007011 Chenopodium quinoa HOM05D005777 ORTHO05D006854 1.4e-22 111.3 200 38.0
Eucgr.E00894 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.8e-22 110.9 129 45.7
AL6G44960 Arabidopsis lyrata HOM05D005777 ORTHO05D006854 8.8e-22 108.6 162 42.0
Thhalv10028849m.g Eutrema salsugineum HOM05D005777 ORTHO05D006854 8.8e-22 108.6 158 41.1
Actinidia27306 Actinidia chinensis HOM05D005777 ORTHO05D006854 7.4e-21 105.5 71 67.6
FAN04G0565 Fragaria x ananassa HOM05D005777 ORTHO05D006854 1.3e-20 104.8 77 59.7
AT4G10890 Arabidopsis thaliana HOM05D005777 ORTHO05D006854 1.7e-20 104.4 160 41.9
Carub.0006s2962 Capsella rubella HOM05D005777 ORTHO05D006854 2.8e-20 103.6 161 40.4
Sp6g06640 Schrenkiella parvula HOM05D005777 ORTHO05D006854 6.3e-20 102.4 147 41.5
BraA09t38398Z Brassica rapa HOM05D005777 ORTHO05D006854 1.8e-19 100.9 151 39.1
Eucgr.E00726 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.4e-19 100.5 142 38.0
A09p28290 Brassica napus HOM05D005777 ORTHO05D006854 1.5e-18 97.8 151 41.1
Eucgr.E00696 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.6e-18 97.1 107 41.1
CARHR255730 Cardamine hirsuta HOM05D005777 ORTHO05D006854 3.4e-18 96.7 158 39.2
Eucgr.E00912 Eucalyptus grandis HOM05D005777 ORTHO05D006854 5.9e-18 95.9 107 41.1
Eucgr.E00686 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.9e-17 93.6 107 44.9
C09p35860 Brassica napus HOM05D005777 ORTHO05D006854 5.0e-17 92.8 143 39.2
BcaC04g21086 Brassica carinata HOM05D005777 ORTHO05D006854 8.5e-17 92.0 146 39.0
BolC9t56419H Brassica oleracea HOM05D005777 ORTHO05D006854 5.5e-16 89.4 143 38.5
SHI06955 Sapria himalayana HOM05D005777 ORTHO05D006854 5.5e-16 89.4 93 50.5
Gohir.D02G103200 Gossypium hirsutum HOM05D005777 ORTHO05D006854 7.9e-15 85.5 155 38.1
BcaB01g01556 Brassica carinata HOM05D005777 ORTHO05D006854 2.3e-14 84.0 80 52.5
Aa31LG9G11240 Aethionema arabicum HOM05D005777 ORTHO05D006854 3.9e-14 83.2 71 52.1
QL08p034398 Quercus lobata HOM05D000176 ORTHO05D000106 9.1e-11 72.0 55 61.8
QL06p042986 Quercus lobata HOM05D000529 ORTHO05D000472 2.6e-10 70.5 50 66.0
Eucgr.H03743 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.3e-09 68.2 77 45.5
PSO063G6181 Papaver somniferum HOM05D005777 ORTHO05D006854 2.7e-07 60.5 46 56.5
Hma1.2p1_0338F.1_g129700 Hydrangea macrophylla HOM05D005777 ORTHO05D006854 3.6e-07 60.1 63 44.4
AagrBONN_evm.TU.Sc2ySwM_368.2767 Anthoceros agrestis HOM05D005777 ORTHO05D006854 8.0e-07 58.9 73 37.0
FAN18G0036 Fragaria x ananassa HOM05D005777 ORTHO05D006854 1.4e-06 58.2 36 75.0
Lsat_1_v5_gn_8_138920 Lactuca sativa HOM05D005777 ORTHO05D006854 8.8e-06 55.5 140 30.7


User provided reference genes

Program Settings