Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 1.1e-107 393.3 200 100.0
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.8e-76 289.7 192 78.1
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 3.0e-76 288.9 194 76.8
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 3.9e-76 288.5 192 78.1
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.5e-75 286.6 192 77.6
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 6.3e-74 281.2 179 78.8
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 6.3e-74 281.2 195 73.3
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.4e-73 280.0 188 75.5
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.4e-73 280.0 211 70.6
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 3.1e-73 278.9 205 73.2
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 7.7e-72 274.2 200 73.0
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.0e-71 273.9 204 74.0
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 1.3e-71 273.5 189 77.2
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 2.2e-71 272.7 203 71.9
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 5.0e-71 271.6 201 73.6
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 5.0e-71 271.6 204 70.1
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 5.0e-71 271.6 205 69.8
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 6.5e-71 271.2 206 72.3
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 6.5e-71 271.2 211 67.3
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 1.4e-70 270.0 197 73.6
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 3.2e-70 268.9 204 71.1
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 4.2e-70 268.5 203 71.9
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 4.2e-70 268.5 212 69.3
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 4.2e-70 268.5 206 71.8
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 4.2e-70 268.5 196 70.9
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 3.6e-69 265.4 204 71.1
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 3.6e-69 265.4 178 78.1
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 3.6e-69 265.4 194 73.7
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 3.6e-69 265.4 194 73.7
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 4.7e-69 265.0 206 71.8
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 6.1e-69 264.6 211 69.2
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 6.1e-69 264.6 199 70.4
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 6.1e-69 264.6 198 72.7
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 6.1e-69 264.6 213 68.5
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 7.9e-69 264.2 204 71.1
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 1.8e-68 263.1 208 72.6
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 1.8e-68 263.1 192 75.0
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 1.8e-68 263.1 188 72.9
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 1.8e-68 263.1 204 71.1
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 1.8e-68 263.1 194 73.2
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 2.3e-68 262.7 201 70.6
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 2.3e-68 262.7 155 83.9
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 3.0e-68 262.3 205 68.3
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 5.2e-68 261.5 210 71.9
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 5.2e-68 261.5 211 72.5
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 5.2e-68 261.5 210 71.9
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 5.2e-68 261.5 189 73.5
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 6.7e-68 261.2 189 73.0
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 6.7e-68 261.2 208 70.7
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 8.8e-68 260.8 184 73.4
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 8.8e-68 260.8 207 69.6
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 8.8e-68 260.8 181 73.5
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 8.8e-68 260.8 204 71.6
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 8.8e-68 260.8 204 71.6
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 8.8e-68 260.8 203 71.9
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 8.8e-68 260.8 177 74.6
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 8.8e-68 260.8 194 71.1
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 1.1e-67 260.4 211 72.0
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 1.1e-67 260.4 203 71.9
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 1.5e-67 260.0 198 70.2
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 1.5e-67 260.0 156 82.1
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 2.0e-67 259.6 211 68.2
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 2.0e-67 259.6 204 68.1
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 2.0e-67 259.6 207 68.6
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 2.6e-67 259.2 187 71.1
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 2.6e-67 259.2 217 71.0
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 2.6e-67 259.2 215 66.5
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.3e-67 258.8 177 74.0
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.3e-67 258.8 177 74.0
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 3.3e-67 258.8 202 70.3
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 3.3e-67 258.8 204 70.6
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 3.3e-67 258.8 202 70.8
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 5.7e-67 258.1 197 69.0
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 9.7e-67 257.3 187 73.3
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 1.3e-66 256.9 206 68.9
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.2e-66 256.1 154 82.5
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 2.2e-66 256.1 202 70.3
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 2.2e-66 256.1 205 65.9
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 2.8e-66 255.8 186 72.6
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.8e-66 255.8 186 72.6
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.8e-66 255.8 186 72.6
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 3.7e-66 255.4 210 66.2
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 4.8e-66 255.0 199 70.4
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 6.3e-66 254.6 199 68.8
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 6.3e-66 254.6 204 72.1
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 6.3e-66 254.6 154 81.8
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 6.3e-66 254.6 198 70.2
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 8.2e-66 254.2 154 81.2
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 2.4e-65 252.7 215 65.6
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 4.1e-65 251.9 153 79.1
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 5.3e-65 251.5 199 67.8
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 3.5e-64 248.8 155 80.0
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.0e-63 247.3 157 79.6
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 1.7e-63 246.5 257 54.9
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 1.9e-62 243.0 190 66.8
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 2.5e-62 242.7 200 66.5
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 7.2e-62 241.1 197 67.5
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.2e-61 240.4 157 77.1
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 1.2e-61 240.4 208 63.9
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 4.7e-61 238.4 207 62.3
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.7e-61 238.4 197 65.0
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 8.0e-61 237.7 211 63.5
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 8.0e-61 237.7 192 69.8
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 2.3e-60 236.1 193 66.8
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 2.6e-59 232.6 208 62.5
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 2.2e-58 229.6 152 74.3
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 6.3e-58 228.0 155 74.8
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 8.2e-58 227.6 200 63.0
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 1.4e-57 226.9 123 89.4
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 9.1e-57 224.2 221 59.7
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 5.9e-56 221.5 190 64.2
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 1.7e-55 219.9 301 46.5
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 1.1e-54 217.2 202 61.9
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 7.2e-54 214.5 203 60.1
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 2.6e-51 206.1 187 60.4
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 7.5e-51 204.5 156 69.2
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 9.8e-51 204.1 195 60.5
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 8.3e-50 201.1 209 56.5
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 1.1e-49 200.7 187 58.3
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 1.2e-48 197.2 157 64.3
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 1.2e-48 197.2 155 64.5
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 5.9e-48 194.9 198 54.0
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 7.7e-48 194.5 198 54.0
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 3.8e-47 192.2 157 66.9
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 6.5e-47 191.4 102 92.2
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 9.5e-46 187.6 138 69.6
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 1.8e-44 183.3 164 59.1
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 1.1e-38 164.1 209 51.7
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 2.1e-37 159.8 93 81.7
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 2.3e-36 156.4 151 52.3
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.5e-35 153.7 154 51.3
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 5.8e-35 151.8 115 62.6
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 5.8e-35 151.8 194 43.8
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 1.4e-33 147.1 81 86.4
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 6.0e-32 141.7 115 56.5
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 6.0e-32 141.7 106 57.5
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 1.6e-29 133.7 95 65.3
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 4.4e-27 125.6 80 76.2
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.7e-26 123.6 67 88.1
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.7e-26 123.6 67 88.1
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 8.3e-26 121.3 130 61.5
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 6.2e-21 105.1 131 52.7
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 1.4e-20 104.0 71 71.8
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 2.5e-14 83.2 50 78.0
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 3.3e-14 82.8 160 35.6
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 2.3e-07 60.1 38 76.3
FAN28G1308 Fragaria x ananassa HOM05D022793 ORTHO05D200777 6.6e-07 58.5 63 52.4


User provided reference genes

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