Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 2.4e-102 375.6 197 100.0
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 1.7e-71 273.1 197 74.1
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 2.7e-69 265.8 224 66.1
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 4.6e-69 265.0 197 73.6
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 1.1e-67 260.4 197 71.6
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.9e-67 259.6 224 64.7
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 4.4e-64 248.4 194 70.6
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 1.4e-62 243.4 244 57.0
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 2.1e-61 239.6 207 64.7
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 7.8e-61 237.7 199 65.8
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 6.6e-60 234.6 198 67.7
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 6.6e-60 234.6 241 59.3
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 2.5e-59 232.6 204 64.7
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 3.3e-59 232.3 204 64.2
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 2.1e-58 229.6 202 63.9
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 2.8e-58 229.2 196 66.3
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 3.6e-58 228.8 204 62.3
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 3.6e-58 228.8 206 61.2
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 6.2e-58 228.0 208 61.1
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 6.2e-58 228.0 179 74.3
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 6.9e-57 224.6 207 59.9
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 9.0e-57 224.2 204 63.2
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 2.6e-56 222.6 206 61.2
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 7.6e-56 221.1 198 63.6
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 9.9e-56 220.7 204 62.3
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 2.9e-55 219.2 198 63.6
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 6.4e-55 218.0 200 62.5
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 5.1e-52 208.4 204 60.3
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 8.7e-52 207.6 203 58.6
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.1e-51 207.2 203 58.1
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 1.5e-51 206.8 179 67.0
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 1.5e-51 206.8 209 61.7
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 1.9e-51 206.5 205 62.0
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.9e-51 206.5 203 58.1
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 3.3e-51 205.7 198 59.1
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 4.3e-51 205.3 206 59.2
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 7.4e-51 204.5 189 63.5
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 1.3e-50 203.8 208 60.6
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 2.1e-50 203.0 211 57.3
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 2.1e-50 203.0 211 57.3
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 6.2e-50 201.4 200 59.0
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 6.2e-50 201.4 204 57.8
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 3.1e-49 199.1 200 61.0
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.2e-48 197.2 261 47.9
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.2e-48 197.2 261 47.9
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 1.5e-48 196.8 189 61.9
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 5.8e-48 194.9 205 57.6
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 1.0e-47 194.1 297 44.1
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 1.7e-47 193.4 201 56.2
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 1.7e-47 193.4 197 56.3
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 2.9e-47 192.6 202 59.9
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 1.4e-46 190.3 201 57.7
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.9e-46 189.9 205 58.0
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 2.5e-46 189.5 204 58.3
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 2.5e-46 189.5 203 55.7
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 4.2e-46 188.7 210 53.8
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 7.1e-46 188.0 194 60.8
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 1.2e-45 187.2 201 56.7
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 2.7e-45 186.0 186 61.3
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 2.7e-45 186.0 186 61.3
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 3.5e-45 185.7 201 53.2
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 3.0e-44 182.6 207 54.1
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 3.0e-44 182.6 200 55.5
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 3.9e-44 182.2 196 53.6
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 1.1e-43 180.6 200 55.5
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 1.1e-43 180.6 201 54.2
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 1.5e-43 180.3 226 53.1
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 3.3e-43 179.1 201 55.2
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 1.6e-42 176.8 158 63.3
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 4.8e-42 175.3 205 57.1
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 4.8e-42 175.3 205 57.1
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 6.2e-42 174.9 197 50.8
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 4.0e-41 172.2 195 59.0
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 6.9e-41 171.4 200 52.5
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 6.9e-41 171.4 119 77.3
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 1.2e-40 170.6 119 76.5
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 2.6e-40 169.5 119 76.5
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 2.6e-40 169.5 190 54.2
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 7.6e-40 167.9 119 74.8
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 7.6e-40 167.9 119 74.8
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 1.0e-39 167.5 166 59.6
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 5.0e-39 165.2 143 62.2
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 6.5e-39 164.9 207 52.7
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 8.4e-39 164.5 192 57.8
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 1.4e-38 163.7 207 49.3
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 3.2e-38 162.5 206 52.9
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 2.7e-37 159.5 201 53.2
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 3.5e-37 159.1 119 73.1
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 4.6e-37 158.7 120 69.2
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 6.1e-37 158.3 207 48.8
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 3.0e-36 156.0 123 69.1
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 1.5e-35 153.7 225 46.2
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 1.6e-34 150.2 208 46.6
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 3.7e-34 149.1 208 49.5
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 2.4e-33 146.4 211 46.0
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 3.1e-33 146.0 215 46.5
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 3.1e-33 146.0 202 48.0
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 5.3e-33 145.2 213 47.9
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 6.9e-33 144.8 124 62.1
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 9.0e-33 144.4 120 66.7
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 1.2e-32 144.1 208 48.1
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 2.0e-32 143.3 254 42.9
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 1.0e-31 141.0 204 45.1
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 5.0e-31 138.7 256 40.2
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 8.5e-31 137.9 202 44.6
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 1.1e-30 137.5 151 55.0
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 3.6e-29 132.5 288 37.2
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 7.9e-29 131.3 175 48.6
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 3.9e-28 129.0 307 35.5
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 8.8e-28 127.9 119 59.7
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 4.3e-27 125.6 198 45.5
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 2.4e-25 119.8 232 40.1
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 3.1e-25 119.4 194 42.3
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 5.3e-25 118.6 195 43.6
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 6.9e-25 118.2 120 55.8
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 1.2e-24 117.5 195 42.1
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 1.7e-23 113.6 198 42.4
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 2.2e-23 113.2 200 40.5
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 2.9e-23 112.8 190 43.2
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 3.8e-23 112.5 98 60.2
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 6.5e-23 111.7 185 47.6
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.9e-22 110.2 195 43.6
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 3.2e-22 109.4 120 55.8
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 7.2e-22 108.2 109 54.1
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 4.7e-21 105.5 102 59.8
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 6.1e-21 105.1 139 49.6
Oeu029936.1 Olea europaea HOM05D005115 ORTHO05D005703 1.2e-16 90.9 63 71.4
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 1.5e-16 90.5 121 47.1
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.6e-16 89.7 109 46.8
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.6e-16 89.7 109 46.8
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 2.6e-16 89.7 109 46.8
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 2.9e-15 86.3 120 44.2
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 3.8e-15 85.9 261 33.7
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 1.1e-14 84.3 120 43.3
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 1.5e-14 84.0 255 32.9
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 1.9e-14 83.6 118 44.1
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 4.2e-14 82.4 69 59.4
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 4.2e-14 82.4 73 64.4
Lj4g0005021 Lotus japonicus HOM05D005115 ORTHO05D005703 9.4e-14 81.3 150 37.3
CSS0029994 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.2e-13 80.9 82 61.0
CSS0045410 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.2e-13 80.9 82 61.0
Lalb_Chr05g0211571 Lupinus albus HOM05D005115 ORTHO05D005703 1.6e-13 80.5 90 48.9
QL02p030259 Quercus lobata HOM05D005115 ORTHO05D005703 1.3e-10 70.9 82 52.4
Lsat_1_v5_gn_1_118201 Lactuca sativa HOM05D009751 ORTHO05D005703 2.2e-10 70.1 66 54.5
FAN04G1053 Fragaria x ananassa HOM05D005115 ORTHO05D005703 2.4e-09 66.6 68 55.9
Lsat_1_v5_gn_8_68541 Lactuca sativa HOM05D005115 ORTHO05D018183 7.0e-09 65.1 86 46.5
MD06G1108300 Malus domestica HOM05D005115 ORTHO05D005703 7.0e-09 65.1 59 62.7
Actinidia04197 Actinidia chinensis HOM05D000749 ORTHO05D004893 8.5e-07 58.2 80 47.5
AagrBONN_evm.TU.Sc2ySwM_344.5012 Anthoceros agrestis HOM05D028980 ORTHO05D026613 1.9e-06 57.0 103 42.7


User provided reference genes

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